pycom16g12750

Ribosomal protein S6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0013271
Physical Location & Seq
Forward (+)
9017917 .. 9020159
2243 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 903 bp
ATGGGGGCACTCATACACTCCTTCTCTGTAGCTTCTCTCACTCCAACGGCTCTAAAACTGGTCTGCACAAATGGGTCCTCCTCCAAAAACCAAAATTCAAGCTTGCAATTCTCAAATGGATTCTCTTCGTTTTCTTCTCGTCGGCCATTTCCAGCTCAGAAGCTCCCAGTAACAGTCAGAAGGTCGGTGATTGTTTTTGCGAAGAAGAACAGCAACAAGGAGAAGAAGAAGGAAGACAACCACAGCTTTGCATCGAAACCGGATGAGGCCACTGGGCCTTTCCCTGAATCTGTGCTGCTTAAACAGAAGAAAGTTCAGGAAGATGGTAACGTTCTCCCTGAGTTTGCAGATGCCGAAGAAGAGAAGGTGTATGAATTTTTGAAGCTTCAGCTGCAAAGCGATTTGAATGAAGAACGAATGCGCCACTATGAGCTGGTTTATCTGATTCATGAGAAACATGCCGAAGAGGTTGGGAGTGTCAAAGAGAAAATTGAAGAGTTTCTAGCGGAGAAGAAAGCCAGGATATGGAGAGTGAGCAATTGGGGAATGCGAAGACTAGCATACCAAATAAAGAAAGCGAAGAACGCTTACTACGTTTTGATGAACTTTGAGATGGAAGCGAAATGGATAAATGACTTTAAGACCATGCTAGACAAGGATGAAAGAGTCATTCGGCATCTTGTGATTAAGAGGGATGAGGCAATCACAGAAGACTGCCCTCCTCCTCCCGAGTTTCACACTGTCGGTGGAGGTACAGATTCTGATGAAGAAGAACAGGATGATATGGAGTATGATGACGAAGAGTATGAAGATGACGATGAAGACGGGATTATTATCGTTGACGCTGACAATGATGATATAGAAGAAGATAGGGAACAAAGAAGGGTAGAACAACTAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S6

Protein Analysis

301

Amino Acids

34.72

Weight (kDa)

4.88

Isoelectric Point (pI)

54.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S6 PF01250 142 - 230 3.5e-25 Ribosomal protein S6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17170
fragaria_vesca FvH4_4g20660
malus_domestica MD13G1149000.v1.1 MD16G1149200.v1.1
prunus_persica Prupe.1G113000_v2.0.a1
pyrus_communis pycom13g12820 pycom16g12750
rosa_chinensis RchiOBHm_Chr4g0426061
rosa_laevigata RLG00000007320
rosa_multiflora Rmu_ssc0000281.1_g000002 Rmu_ssc0000281.1_g000007
rosa_roxburghii Rroxscaffold_5G00368060
rosa_rugosa Rorug04G0208200
rosa_samantha Rh4AG265200 Rh4BG271300 Rh4CG284300 Rh4DG267600
rosa_wichuraiana Rw4G022930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 525
AciI CCGC 1 cut(s) 506
AclI AACGTT 1 cut(s) 330
AcoI YGGCCR 1 cut(s) 143
AcsI RAATTY 2 cut(s) 94, 374
AcuI CTGAAG 1 cut(s) 371
AfaI GTAC 1 cut(s) 754
AfiI CCNNNNNNNGG 1 cut(s) 525
AgsI TTSAA 4 cut(s) 99, 382, 406, 494
AhlI ACTAGT 1 cut(s) 895
AjnI CCWGG 1 cut(s) 518
AluBI AGCT 8 cut(s) 32, 102, 155, 163, 246, 385, 391, 433
AluI AGCT 8 cut(s) 32, 102, 155, 163, 246, 385, 391, 433
AlwNI CAGNNNCTG 1 cut(s) 761
Ama87I CYCGRG 1 cut(s) 728
AoxI GGCC 3 cut(s) 143, 267, 275
ApeKI GCWGC 2 cut(s) 295, 391
ApoI RAATTY 2 cut(s) 94, 374
Asp700I GAANNNNTTC 1 cut(s) 498
AspLEI GCGC 1 cut(s) 423
AspS9I GGNCC 2 cut(s) 75, 275
AsuHPI GGTGA 1 cut(s) 199
AvaI CYCGRG 1 cut(s) 728
AvaII GGWCC 1 cut(s) 75
BaeGI GKGCMC 1 cut(s) 10
BarI GAAGNNNNNNTAC 2 cut(s) 572, 604
BbsI GAAGAC 4 cut(s) 240, 559, 717, 828
BbvI GCAGC 2 cut(s) 282, 378
BccI CCATC 2 cut(s) 317, 607
BceAI ACGGC 1 cut(s) 63
BciT130I CCWGG 1 cut(s) 520
BcuI ACTAGT 1 cut(s) 895
BfaI CTAG 4 cut(s) 503, 557, 650, 896
BfmI CTRYAG 1 cut(s) 27
BisI GCNGC 2 cut(s) 296, 392
BlsI GCNGC 2 cut(s) 297, 393
Bme1390I CCNGG 1 cut(s) 520
Bme18I GGWCC 1 cut(s) 75
BmeT110I CYCGRG 1 cut(s) 728
BmgT120I GGNCC 2 cut(s) 75, 275
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 1 cut(s) 520
BmrI ACTGGG 2 cut(s) 161, 282
BmsI GCATC 3 cut(s) 260, 340, 685
BmuI ACTGGG 2 cut(s) 161, 282
BpiI GAAGAC 4 cut(s) 240, 559, 717, 828
BsaBI GATNNNNATC 1 cut(s) 833
BsaWI WCCGGW 1 cut(s) 259
Bsc4I CCNNNNNNNGG 1 cut(s) 525
Bse1I ACTGG 3 cut(s) 63, 167, 277
Bse8I GATNNNNATC 1 cut(s) 833
BseBI CCWGG 1 cut(s) 520
BseGI GGATG 4 cut(s) 268, 664, 700, 784
BseJI GATNNNNATC 1 cut(s) 833
BseLI CCNNNNNNNGG 1 cut(s) 525
BseMII CTCAG 2 cut(s) 170, 330
BseNI ACTGG 3 cut(s) 63, 167, 277
BseRI GAGGAG 3 cut(s) 70, 711, 714
BseSI GKGCMC 1 cut(s) 10
BseXI GCAGC 2 cut(s) 282, 378
BsgI GTGCAG 1 cut(s) 49
BshFI GGCC 3 cut(s) 145, 269, 277
BsiHKCI CYCGRG 1 cut(s) 728
BsiSI CCGG 1 cut(s) 260
BslI CCNNNNNNNGG 1 cut(s) 525
BsmI GAATGC 2 cut(s) 423, 552
BsnI GGCC 3 cut(s) 145, 269, 277
BsoBI CYCGRG 1 cut(s) 728
Bsp1286I GDGCHC 1 cut(s) 10
BspACI CCGC 1 cut(s) 506
BspANI GGCC 3 cut(s) 145, 269, 277
BspCNI CTCAG 2 cut(s) 169, 331
BspHI TCATGA 1 cut(s) 448
BspLI GGNNCC 1 cut(s) 76
BsrI ACTGG 3 cut(s) 63, 167, 277
Bst2UI CCWGG 1 cut(s) 520
Bst4CI ACNGT 2 cut(s) 175, 742
Bst6I CTCTTC 5 cut(s) 130, 354, 459, 489, 795
BstC8I GCNNGC 1 cut(s) 104
BstDEI CTNAG 2 cut(s) 156, 339
BstF5I GGATG 4 cut(s) 268, 664, 700, 784
BstHHI GCGC 1 cut(s) 423
BstMWI GCNNNNNNNGC 2 cut(s) 391, 584
BstNI CCWGG 1 cut(s) 520
BstNSI RCATGY 1 cut(s) 461
BstSCI CCNGG 1 cut(s) 518
BstSFI CTRYAG 1 cut(s) 27
BstSLI GKGCMC 1 cut(s) 10
BstV1I GCAGC 2 cut(s) 282, 378
BstV2I GAAGAC 4 cut(s) 240, 559, 717, 828
BsuRI GGCC 3 cut(s) 145, 269, 277
BtsCI GGATG 4 cut(s) 268, 664, 700, 784
BtsIMutI CAGTG 2 cut(s) 270, 738
Cac8I GCNNGC 1 cut(s) 104
CaiI CAGNNNCTG 1 cut(s) 761
CciI TCATGA 1 cut(s) 448
CfoI GCGC 1 cut(s) 423
Cfr13I GGNCC 2 cut(s) 75, 275
CseI GACGC 1 cut(s) 851
Csp6I GTAC 1 cut(s) 753
CviAII CATG 3 cut(s) 449, 458, 646
CviQI GTAC 1 cut(s) 753
DdeI CTNAG 2 cut(s) 156, 339
EaeI YGGCCR 1 cut(s) 143
Eam1104I CTCTTC 5 cut(s) 130, 354, 459, 489, 795
EarI CTCTTC 5 cut(s) 130, 354, 459, 489, 795
Eco47I GGWCC 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 371
Eco88I CYCGRG 1 cut(s) 728
EcoO109I RGGNCCY 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 518
FaeI CATG 3 cut(s) 452, 461, 649
FatI CATG 3 cut(s) 448, 457, 645
Fnu4HI GCNGC 2 cut(s) 296, 392
FokI GGATG 4 cut(s) 275, 671, 707, 791
Fsp4HI GCNGC 2 cut(s) 296, 392
FspBI CTAG 4 cut(s) 503, 557, 650, 896
GlaI GCGC 1 cut(s) 422
GluI GCNGC 2 cut(s) 296, 392
HaeIII GGCC 3 cut(s) 145, 269, 277
HapII CCGG 1 cut(s) 260
HgaI GACGC 1 cut(s) 851
HhaI GCGC 1 cut(s) 423
Hin1II CATG 3 cut(s) 452, 461, 649
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HincII GTYRAC 1 cut(s) 841
HindII GTYRAC 1 cut(s) 841
HindIII AAGCTT 2 cut(s) 100, 383
HinfI GANTC 5 cut(s) 120, 287, 445, 666, 758
HpaII CCGG 1 cut(s) 260
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 1 cut(s) 841
Hpy188I TCNGA 4 cut(s) 159, 179, 444, 763
Hpy188III TCNNGA 3 cut(s) 317, 449, 728
Hpy8I GTNNAC 1 cut(s) 841
Hpy99I CGWCG 1 cut(s) 144
HpyAV CCTTC 5 cut(s) 31, 174, 223, 358, 876
HpyCH4III ACNGT 2 cut(s) 175, 742
HpyCH4IV ACGT 2 cut(s) 330, 594
HpyCH4V TGCA 5 cut(s) 66, 106, 251, 347, 394
HpyF10VI GCNNNNNNNGC 2 cut(s) 391, 584
HpyF3I CTNAG 2 cut(s) 156, 339
HpySE526I ACGT 2 cut(s) 330, 594
Hsp92II CATG 3 cut(s) 452, 461, 649
HspAI GCGC 1 cut(s) 421
LmnI GCTCC 1 cut(s) 168
Lsp1109I GCAGC 2 cut(s) 282, 378
LweI GCATC 3 cut(s) 260, 340, 685
MaeI CTAG 4 cut(s) 503, 557, 650, 896
MaeII ACGT 2 cut(s) 330, 594
MaeIII GTNAC 2 cut(s) 169, 326
MfeI CAATTG 1 cut(s) 538
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 5 cut(s) 94, 107, 374, 489, 538
MlyI GAGTC 1 cut(s) 675
MmeI TCCRAC 1 cut(s) 68
MroXI GAANNNNTTC 1 cut(s) 498
MseI TTAA 3 cut(s) 300, 639, 687
MspA1I CMGCKG 1 cut(s) 391
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 520
MunI CAATTG 1 cut(s) 538
Mva1269I GAATGC 2 cut(s) 423, 552
MvaI CCWGG 1 cut(s) 520
MwoI GCNNNNNNNGC 2 cut(s) 391, 584
NlaIII CATG 3 cut(s) 452, 461, 649
NlaIV GGNNCC 1 cut(s) 76
NspI RCATGY 1 cut(s) 461
PagI TCATGA 1 cut(s) 448
PcsI WCGNNNNNNNCGW 1 cut(s) 591
PctI GAATGC 2 cut(s) 423, 552
PdmI GAANNNNTTC 1 cut(s) 498
PfeI GAWTC 4 cut(s) 120, 287, 445, 758
PflMI CCANNNNNTGG 1 cut(s) 525
PkrI GCNGC 2 cut(s) 297, 393
PleI GAGTC 1 cut(s) 674
PpsI GAGTC 1 cut(s) 674
PpuMI RGGWCCY 1 cut(s) 75
Psp1406I AACGTT 1 cut(s) 330
Psp5II RGGWCCY 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 518
PspGI CCWGG 1 cut(s) 518
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 2 cut(s) 75, 275
PspPPI RGGWCCY 1 cut(s) 75
PsrI GAACNNNNNNTAC 2 cut(s) 575, 607
PstNI CAGNNNCTG 1 cut(s) 761
PvuII CAGCTG 1 cut(s) 391
RsaI GTAC 1 cut(s) 754
RsaNI GTAC 1 cut(s) 753
SaqAI TTAA 3 cut(s) 300, 639, 687
SatI GCNGC 2 cut(s) 296, 392
Sau96I GGNCC 2 cut(s) 75, 275
SchI GAGTC 1 cut(s) 675
ScrFI CCNGG 1 cut(s) 520
SduI GDGCHC 1 cut(s) 10
SfaNI GCATC 3 cut(s) 260, 340, 685
SfcI CTRYAG 1 cut(s) 27
SinI GGWCC 1 cut(s) 75
SpeI ACTAGT 1 cut(s) 895
Sse9I AATT 5 cut(s) 94, 107, 374, 489, 538
SsiI CCGC 1 cut(s) 506
SspMI CTAG 4 cut(s) 503, 557, 650, 896
StyD4I CCNGG 1 cut(s) 518
TaaI ACNGT 2 cut(s) 175, 742
TaiI ACGT 2 cut(s) 333, 597
TaqI TCGA 1 cut(s) 254
TasI AATT 5 cut(s) 94, 107, 374, 489, 538
TfiI GAWTC 4 cut(s) 120, 287, 445, 758
Tru1I TTAA 3 cut(s) 300, 639, 687
Tru9I TTAA 3 cut(s) 300, 639, 687
TscAI CASTG 2 cut(s) 277, 745
TseI GCWGC 2 cut(s) 295, 391
TspDTI ATGAA 8 cut(s) 387, 423, 437, 617, 675, 780, 822, 834
TspRI CASTG 2 cut(s) 277, 745
Van91I CCANNNNNTGG 1 cut(s) 525
VpaK11BI GGWCC 1 cut(s) 75
XapI RAATTY 2 cut(s) 94, 374
XceI RCATGY 1 cut(s) 461
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 4 cut(s) 503, 557, 650, 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.