pycom16g14120

Ubiquitin-like-specific protease

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
10160350 .. 10164287
3938 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1542 bp
ATGGGAGCGCTAACCAGCAATCGTAAGCGAGGGGACGAGTGTTTGAGCTTCAATTGTGCGCACCCATCTCTGAATTTGCCGAATTTTCAAAGCTCGAAGCGACACAGATTGTCTCATATGAATCAGAGCCCGAGCCGACTCATTATCTCGTCTAAAAGCCCTGGTTCAAGGCTCTCTCGGTACCCCGATATAAAGCCGCCGTTGCCTAGAGTTCACGCCCCTTGCAGAACACAAAAATTCGGGTCCTTTCGCGATTCGAGTTCGAAATCCAGAGGGGTTACTGAGGAGCGGTCGTGTGACATAATGGGCAATATACTGAGTTACCATTTGGACAAGGCAAAGAGCGATGCCTTCGGTGCATTTCGGTATTCAAGCAAGGACAAGGAGGTGATTGAATTGGATAAGAAGGTTGAAGATGACCGGGTTTCTGAGGATTCGAGCATAGAAGAAGTTGTGGCTATAAAGGAAGATGACCAAGAAGGGCCTTCTGTGGTCGATTATGGGCAGGATTTGGATACGAAGATGGTTGATTGTGGAACTCAGGTTACCCATCCATCGGCTTCTTCAGTGGTTCCAGACTTGCCCACAACTACGAACGCCCCTTTCAAAGTGGACAGTGCAGGGAAGATGTTGGACTCACTGTCGCTGAATCATGATGCAGGTGTGCCAAGTAAGGCAGCATACAAGCTGTTGATTGAGAGTGTAGAGAGGCGAACTCCGAAATTGAAACATTTGGATTCCCAGATTGACTTCCATTGGAAGAAACGGTCTATGCTTGAATCGCTGCGTCCACAAAAGAAACCCGAGGAGGTTGTGCCCGTTGAACCATTTGTCCCTCTTAGAAAGGAGGAAGTGGCTCAGATTGAGCAAGCATTTTCGTCCTCCAACCGGAGGAGGGTCTTGGTAACTCATGAGAACTCGAACATAGAGATAACAGGTGAACTTCTGCAGTGCCTTAGACCACGCGCATGGTTGAACGATGAGGTCATAAACGTCTACTTTGAATTGCTGAAAGAGAGGGAGAAGAGAGAACCGCAAAAGTTCTTAAAATGTCATTTCTTCAACACATTTTTCTACAAAAAGTTGATAAGTGGGAAAGGTGGCTATGATTATAAATCTGTCAAAAGGTGGACTACCCAAAGAAAGCTGGGATACAGCCTCATTGATTGCGACAAAATATTTGTTCCCATCCACAAAGAAATACATTGGTGCTTGGCAGTTATTAACAAGGTTTCGATCGATCGGAAGTTACAGTATCTTGATTCACTCAAAGGAAGGGATACCCAAGTGATGAGAATATTGGCTAAATACTACGTTGATGAAGTGAAGGACAAGAGTGGAAAGGATATCGATTTGAGTTCTTGGGAATTAGAATATGTTGACAACCTTCCTGAGCAGGAGAATGGGTATGACTGCGGCGTTTTCATGGTTAAATATGCTGACTTTTATAGCAGGGATGTTGGGCTCTGTTTCAAACAGAAACACATGCCATATTTTCGATTGAGAACAGCGAAGGAGATCCTAAATTTGAGAGCAGACTGA

Protein Analysis

514

Amino Acids

58.99

Weight (kDa)

8.79

Isoelectric Point (pI)

56.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 324 - 507 1.1e-41 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1113
AarI CACCTGC 1 cut(s) 650
Acc16I TGCGCA 1 cut(s) 60
Acc36I ACCTGC 1 cut(s) 650
Acc65I GGTACC 1 cut(s) 180
AccB1I GGYRCC 1 cut(s) 180
AccBSI CCGCTC 1 cut(s) 289
AccI GTMKAC 1 cut(s) 996
AccII CGCG 2 cut(s) 252, 966
AciI CCGC 4 cut(s) 197, 289, 1034, 1416
AclWI GGATC 1 cut(s) 1513
AcsI RAATTY 4 cut(s) 73, 82, 236, 1525
AcuI CTGAAG 1 cut(s) 549
AfaI GTAC 1 cut(s) 182
AfeI AGCGCT 1 cut(s) 9
AfiI CCNNNNNNNGG 4 cut(s) 556, 888, 891, 895
AhdI GACNNNNNGTC 1 cut(s) 640
AjnI CCWGG 1 cut(s) 160
AloI GAACNNNNNNTCC 2 cut(s) 816, 848
AluBI AGCT 4 cut(s) 48, 93, 688, 1147
AluI AGCT 4 cut(s) 48, 93, 688, 1147
Alw26I GTCTC 1 cut(s) 117
AlwI GGATC 1 cut(s) 1513
Ama87I CYCGRG 2 cut(s) 130, 803
Aor51HI AGCGCT 1 cut(s) 9
AoxI GGCC 1 cut(s) 482
ApeKI GCWGC 2 cut(s) 677, 784
ApoI RAATTY 4 cut(s) 73, 82, 236, 1525
ArsI GACNNNNNNTTYG 2 cut(s) 1163, 1195
Asp718I GGTACC 1 cut(s) 180
AspLEI GCGC 3 cut(s) 10, 61, 968
AspS9I GGNCC 2 cut(s) 243, 482
AsuC2I CCSGG 1 cut(s) 422
AsuHPI GGTGA 2 cut(s) 400, 950
AsuII TTCGAA 1 cut(s) 263
AvaI CYCGRG 2 cut(s) 130, 803
AvaII GGWCC 1 cut(s) 243
BaeGI GKGCMC 1 cut(s) 819
BaeI ACNNNNGTAYC 2 cut(s) 1272, 1305
BanI GGYRCC 1 cut(s) 180
BanII GRGCYC 2 cut(s) 131, 1467
BbvI GCAGC 2 cut(s) 689, 771
BccI CCATC 5 cut(s) 73, 517, 558, 562, 1196
BceAI ACGGC 1 cut(s) 184
BciT130I CCWGG 1 cut(s) 162
BciVI GTATCC 3 cut(s) 508, 1145, 1273
BcnI CCSGG 1 cut(s) 422
BcoDI GTCTC 1 cut(s) 117
BfaI CTAG 1 cut(s) 207
BfmI CTRYAG 1 cut(s) 947
BfoI RGCGCY 1 cut(s) 11
BfuAI ACCTGC 1 cut(s) 650
BfuI GTATCC 3 cut(s) 508, 1145, 1273
BisI GCNGC 4 cut(s) 197, 678, 785, 1417
BlsI GCNGC 4 cut(s) 198, 679, 786, 1418
Bme1390I CCNGG 2 cut(s) 162, 422
Bme18I GGWCC 1 cut(s) 243
BmeRI GACNNNNNGTC 1 cut(s) 640
BmeT110I CYCGRG 2 cut(s) 130, 803
BmgT120I GGNCC 2 cut(s) 243, 482
BmiI GGNNCC 3 cut(s) 182, 244, 573
BmrFI CCNGG 2 cut(s) 162, 422
BmsI GCATC 2 cut(s) 337, 646
BplI GAGNNNNNCTC 2 cut(s) 700, 732
Bpu10I CCTNAGC 1 cut(s) 1392
Bpu14I TTCGAA 1 cut(s) 263
BpuMI CCSGG 1 cut(s) 422
Bsa29I ATCGAT 2 cut(s) 1239, 1350
BsaJI CCNNGG 2 cut(s) 160, 804
BsaWI WCCGGW 1 cut(s) 888
BsaXI ACNNNNNCTCC 4 cut(s) 278, 308, 1391, 1421
Bsc4I CCNNNNNNNGG 4 cut(s) 556, 888, 891, 895
BseBI CCWGG 1 cut(s) 162
BseCI ATCGAT 2 cut(s) 1239, 1350
BseDI CCNNGG 2 cut(s) 160, 804
BseGI GGATG 3 cut(s) 550, 1188, 1462
BseLI CCNNNNNNNGG 4 cut(s) 556, 888, 891, 895
BseMII CTCAG 6 cut(s) 273, 308, 420, 554, 872, 1383
BseRI GAGGAG 3 cut(s) 299, 821, 907
BseSI GKGCMC 1 cut(s) 819
BseXI GCAGC 2 cut(s) 689, 771
BseYI CCCAGC 1 cut(s) 1147
BsgI GTGCAG 1 cut(s) 639
Bsh1236I CGCG 2 cut(s) 252, 966
Bsh1285I CGRYCG 3 cut(s) 293, 1239, 1243
BshFI GGCC 1 cut(s) 484
BshNI GGYRCC 1 cut(s) 180
BshVI ATCGAT 2 cut(s) 1239, 1350
BsiEI CGRYCG 3 cut(s) 293, 1239, 1243
BsiHKCI CYCGRG 2 cut(s) 130, 803
BsiSI CCGG 2 cut(s) 421, 889
BslFI GGGAC 2 cut(s) 47, 818
BslI CCNNNNNNNGG 4 cut(s) 556, 888, 891, 895
BsmAI GTCTC 1 cut(s) 117
BsmFI GGGAC 2 cut(s) 47, 818
BsnI GGCC 1 cut(s) 484
BsoBI CYCGRG 2 cut(s) 130, 803
Bsp119I TTCGAA 1 cut(s) 263
Bsp1286I GDGCHC 3 cut(s) 131, 819, 1467
Bsp143I GATC 3 cut(s) 1236, 1240, 1518
Bsp68I TCGCGA 1 cut(s) 252
BspACI CCGC 4 cut(s) 197, 289, 1034, 1416
BspANI GGCC 1 cut(s) 484
BspCNI CTCAG 6 cut(s) 274, 309, 421, 553, 871, 1384
BspDI ATCGAT 2 cut(s) 1239, 1350
BspFNI CGCG 2 cut(s) 252, 966
BspHI TCATGA 2 cut(s) 652, 910
BspLI GGNNCC 3 cut(s) 182, 244, 573
BspMAI CTGCAG 1 cut(s) 951
BspMI ACCTGC 1 cut(s) 650
BspPI GGATC 1 cut(s) 1513
BspT104I TTCGAA 1 cut(s) 263
BspT107I GGYRCC 1 cut(s) 180
BsrBI CCGCTC 1 cut(s) 289
BssECI CCNNGG 2 cut(s) 160, 804
BssMI GATC 3 cut(s) 1236, 1240, 1518
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 4 cut(s) 617, 642, 768, 1254
Bst6I CTCTTC 1 cut(s) 1019
BstBI TTCGAA 1 cut(s) 263
BstC8I GCNNGC 1 cut(s) 870
BstDEI CTNAG 8 cut(s) 282, 317, 429, 540, 839, 858, 956, 1392
BstEII GGTNACC 1 cut(s) 544
BstF5I GGATG 3 cut(s) 550, 1188, 1462
BstFNI CGCG 2 cut(s) 252, 966
BstH2I RGCGCY 1 cut(s) 11
BstHHI GCGC 3 cut(s) 10, 61, 968
BstKTI GATC 3 cut(s) 1239, 1243, 1521
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 3 cut(s) 1236, 1240, 1518
BstMCI CGRYCG 3 cut(s) 293, 1239, 1243
BstMWI GCNNNNNNNGC 3 cut(s) 202, 356, 781
BstNI CCWGG 1 cut(s) 162
BstNSI RCATGY 1 cut(s) 1489
BstPI GGTNACC 1 cut(s) 544
BstSCI CCNGG 2 cut(s) 160, 420
BstSFI CTRYAG 1 cut(s) 947
BstSLI GKGCMC 1 cut(s) 819
BstUI CGCG 2 cut(s) 252, 966
BstV1I GCAGC 2 cut(s) 689, 771
BstX2I RGATCY 1 cut(s) 1518
BstXI CCANNNNNNTGG 1 cut(s) 969
BstYI RGATCY 1 cut(s) 1518
Bsu15I ATCGAT 2 cut(s) 1239, 1350
BsuI GTATCC 3 cut(s) 508, 1145, 1273
BsuRI GGCC 1 cut(s) 484
BsuTUI ATCGAT 2 cut(s) 1239, 1350
BtgZI GCGATG 1 cut(s) 360
BtsCI GGATG 3 cut(s) 550, 1188, 1462
BtsI GCAGTG 1 cut(s) 956
BtsIMutI CAGTG 4 cut(s) 573, 622, 638, 956
BtuMI TCGCGA 1 cut(s) 252
BveI ACCTGC 1 cut(s) 650
Cac8I GCNNGC 1 cut(s) 870
CciI TCATGA 2 cut(s) 652, 910
CfoI GCGC 3 cut(s) 10, 61, 968
Cfr13I GGNCC 2 cut(s) 243, 482
ClaI ATCGAT 2 cut(s) 1239, 1350
CseI GACGC 1 cut(s) 776
Csp6I GTAC 1 cut(s) 181
CviAII CATG 5 cut(s) 653, 911, 969, 1426, 1486
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 8 cut(s) 282, 317, 429, 540, 839, 858, 956, 1392
DpnI GATC 3 cut(s) 1238, 1242, 1520
DpnII GATC 3 cut(s) 1236, 1240, 1518
DriI GACNNNNNGTC 1 cut(s) 640
Eam1104I CTCTTC 1 cut(s) 1019
Eam1105I GACNNNNNGTC 1 cut(s) 640
EarI CTCTTC 1 cut(s) 1019
Eco24I GRGCYC 2 cut(s) 131, 1467
Eco32I GATATC 1 cut(s) 1348
Eco47I GGWCC 1 cut(s) 243
Eco47III AGCGCT 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 549
Eco88I CYCGRG 2 cut(s) 130, 803
Eco91I GGTNACC 1 cut(s) 544
EcoO109I RGGNCCY 2 cut(s) 243, 482
EcoO65I GGTNACC 1 cut(s) 544
EcoRII CCWGG 1 cut(s) 160
EcoRV GATATC 1 cut(s) 1348
EcoT38I GRGCYC 2 cut(s) 131, 1467
FaeI CATG 5 cut(s) 656, 914, 972, 1429, 1489
FaqI GGGAC 2 cut(s) 47, 818
FatI CATG 5 cut(s) 652, 910, 968, 1425, 1485
FauNDI CATATG 1 cut(s) 117
FblI GTMKAC 1 cut(s) 996
Fnu4HI GCNGC 4 cut(s) 197, 678, 785, 1417
FokI GGATG 3 cut(s) 537, 1175, 1469
FriOI GRGCYC 2 cut(s) 131, 1467
Fsp4HI GCNGC 4 cut(s) 197, 678, 785, 1417
FspAI RTGCGCAY 1 cut(s) 60
FspBI CTAG 1 cut(s) 207
FspI TGCGCA 1 cut(s) 60
GlaI GCGC 3 cut(s) 9, 60, 967
GluI GCNGC 4 cut(s) 197, 678, 785, 1417
GsaI CCCAGC 1 cut(s) 1151
HaeII RGCGCY 1 cut(s) 11
HaeIII GGCC 1 cut(s) 484
HapII CCGG 2 cut(s) 421, 889
HgaI GACGC 1 cut(s) 776
HhaI GCGC 3 cut(s) 10, 61, 968
Hin1II CATG 5 cut(s) 656, 914, 972, 1429, 1489
Hin6I GCGC 3 cut(s) 8, 59, 966
HinP1I GCGC 3 cut(s) 8, 59, 966
HincII GTYRAC 1 cut(s) 1381
HindII GTYRAC 1 cut(s) 1381
HinfI GANTC 9 cut(s) 121, 138, 254, 434, 635, 649, 737, 779, 1262
HpaII CCGG 2 cut(s) 421, 889
HphI GGTGA 2 cut(s) 400, 950
Hpy166II GTNNAC 7 cut(s) 214, 613, 791, 941, 997, 1131, 1381
Hpy188I TCNGA 6 cut(s) 72, 126, 430, 720, 861, 1245
Hpy188III TCNNGA 7 cut(s) 251, 270, 575, 653, 911, 1259, 1391
Hpy8I GTNNAC 7 cut(s) 214, 613, 791, 941, 997, 1131, 1381
HpyAV CCTTC 8 cut(s) 361, 400, 473, 495, 1269, 1321, 1397, 1507
HpyCH4III ACNGT 4 cut(s) 617, 642, 768, 1254
HpyCH4IV ACGT 2 cut(s) 993, 1314
HpyCH4V TGCA 5 cut(s) 225, 359, 620, 659, 949
HpyF10VI GCNNNNNNNGC 3 cut(s) 202, 356, 781
HpyF3I CTNAG 8 cut(s) 282, 317, 429, 540, 839, 858, 956, 1392
HpySE526I ACGT 2 cut(s) 993, 1314
Hsp92II CATG 5 cut(s) 656, 914, 972, 1429, 1489
HspAI GCGC 3 cut(s) 8, 59, 966
KpnI GGTACC 1 cut(s) 184
Kzo9I GATC 3 cut(s) 1236, 1240, 1518
LmnI GCTCC 2 cut(s) 5, 286
Lsp1109I GCAGC 2 cut(s) 689, 771
LweI GCATC 2 cut(s) 337, 646
MaeI CTAG 1 cut(s) 207
MaeII ACGT 2 cut(s) 993, 1314
MaeIII GTNAC 6 cut(s) 277, 296, 320, 544, 904, 1248
MalI GATC 3 cut(s) 1238, 1242, 1520
MbiI CCGCTC 1 cut(s) 289
MboI GATC 3 cut(s) 1236, 1240, 1518
MboII GAAGA 9 cut(s) 425, 458, 479, 532, 555, 637, 772, 1036, 1051
MfeI CAATTG 1 cut(s) 52
MflI RGATCY 1 cut(s) 1518
MhlI GDGCHC 3 cut(s) 131, 819, 1467
MluCI AATT 9 cut(s) 52, 73, 82, 236, 395, 722, 1004, 1367, 1525
MlyI GAGTC 2 cut(s) 132, 629
MmeI TCCRAC 2 cut(s) 612, 909
MseI TTAA 3 cut(s) 1046, 1224, 1431
MslI CAYNNNNRTG 1 cut(s) 967
MspI CCGG 2 cut(s) 421, 889
MspR9I CCNGG 2 cut(s) 162, 422
MunI CAATTG 1 cut(s) 52
MvaI CCWGG 1 cut(s) 162
MvnI CGCG 2 cut(s) 252, 966
MwoI GCNNNNNNNGC 3 cut(s) 202, 356, 781
NciI CCSGG 1 cut(s) 422
NdeI CATATG 1 cut(s) 117
NdeII GATC 3 cut(s) 1236, 1240, 1518
NlaIII CATG 5 cut(s) 656, 914, 972, 1429, 1489
NlaIV GGNNCC 3 cut(s) 182, 244, 573
NmuCI GTSAC 1 cut(s) 296
NruI TCGCGA 1 cut(s) 252
NsbI TGCGCA 1 cut(s) 60
NspI RCATGY 1 cut(s) 1489
NspV TTCGAA 1 cut(s) 263
PagI TCATGA 2 cut(s) 652, 910
PaqCI CACCTGC 1 cut(s) 650
PfeI GAWTC 7 cut(s) 121, 254, 434, 649, 737, 779, 1262
PkrI GCNGC 4 cut(s) 198, 679, 786, 1418
Ple19I CGATCG 2 cut(s) 1239, 1243
PleI GAGTC 2 cut(s) 132, 629
PpsI GAGTC 2 cut(s) 132, 629
PpuMI RGGWCCY 1 cut(s) 243
PsiI TTATAA 1 cut(s) 1113
Psp5II RGGWCCY 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 160
PspEI GGTNACC 1 cut(s) 544
PspFI CCCAGC 1 cut(s) 1147
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 3 cut(s) 182, 244, 573
PspPI GGNCC 2 cut(s) 243, 482
PspPPI RGGWCCY 1 cut(s) 243
PsrI GAACNNNNNNTAC 2 cut(s) 529, 561
PstI CTGCAG 1 cut(s) 951
PsuI RGATCY 1 cut(s) 1518
PvuI CGATCG 2 cut(s) 1239, 1243
RruI TCGCGA 1 cut(s) 252
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
RseI CAYNNNNRTG 1 cut(s) 967
SaqAI TTAA 3 cut(s) 1046, 1224, 1431
SatI GCNGC 4 cut(s) 197, 678, 785, 1417
Sau3AI GATC 3 cut(s) 1236, 1240, 1518
Sau96I GGNCC 2 cut(s) 243, 482
SchI GAGTC 2 cut(s) 132, 629
ScrFI CCNGG 2 cut(s) 162, 422
SduI GDGCHC 3 cut(s) 131, 819, 1467
SfaNI GCATC 2 cut(s) 337, 646
SfcI CTRYAG 1 cut(s) 947
SfuI TTCGAA 1 cut(s) 263
SinI GGWCC 1 cut(s) 243
SmiMI CAYNNNNRTG 1 cut(s) 967
Sse9I AATT 9 cut(s) 52, 73, 82, 236, 395, 722, 1004, 1367, 1525
SsiI CCGC 4 cut(s) 197, 289, 1034, 1416
SspI AATATT 2 cut(s) 1179, 1299
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 2 cut(s) 160, 420
TaaI ACNGT 4 cut(s) 617, 642, 768, 1254
TaiI ACGT 2 cut(s) 996, 1317
TasI AATT 9 cut(s) 52, 73, 82, 236, 395, 722, 1004, 1367, 1525
TauI GCSGC 2 cut(s) 199, 1419
TfiI GAWTC 7 cut(s) 121, 254, 434, 649, 737, 779, 1262
Tru1I TTAA 3 cut(s) 1046, 1224, 1431
Tru9I TTAA 3 cut(s) 1046, 1224, 1431
TscAI CASTG 4 cut(s) 573, 622, 645, 956
TseFI GTSAC 1 cut(s) 296
TseI GCWGC 2 cut(s) 677, 784
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 3 cut(s) 134, 1335, 1414
TspRI CASTG 4 cut(s) 573, 622, 645, 956
VpaK11BI GGWCC 1 cut(s) 243
XapI RAATTY 4 cut(s) 73, 82, 236, 1525
XceI RCATGY 1 cut(s) 1489
XmiI GTMKAC 1 cut(s) 996
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.