Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009788

Physical Location & Seq

Genomic Coordinates Forward (+)

10331765 .. 10334925

Gene Structure 3161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGAGTCAGGAATCGTTCATCTACAGCTTTGTGGCCAGAGGCACGATGATCCTGGCCGAGTACACTGAGTTCACCGGCAACTTCCCGGCGATTGCGGCGCAGTGTCTCCAGAAACTGCCTTCCTCCAATAACAAGTTCACCTACAACTGCGATCACCACACCTTCAATTTCCTCGTCGAGGACGGATACGCATACTGTGTTGTTGCCAAAGACTCTGTTGGCAAGCAGATATCGATTGCATTTTTAGAACGAGTGAGAGCTGACTTCAAAAAAAGATATGGGGGTGGTAAAGCAGATACGGCTATTGCCAAAAGTCTTAACAAGGAATTTGGACCAATAATGAAAGAGCACATGAAGTATATAATTGATCATGCAGAAGAGATTGAAAAGCTATTGAAAGTGAAGGCGCAAGTTTCAGAAGTTAAAAGTATAATGTTAGAGAATATTGACAAGGCTATTGATAGAGGGGAAAACCTGACTGTTCTTGTTGACAAGACTGACGATCTTCGTTCTCAGGCCCAAGATTACAAAAATAAGGGGACACAAATGAGAAGGAAAATGTGGTATCAAAACATGAAGATAAAGTTGGTCGTTTTCGGAATCCTCCTACTTCTGATCTTGGTAATCTGGCTTTCTATTTGTCATGGATTTGACTGCACGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

222

Amino Acids

25.27

Weight (kDa)

8.68

Isoelectric Point (pI)

37.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	32 - 111	1.8e-20	Regulated-SNARE-like domain
Synaptobrevin	PF00957	131 - 210	3.5e-27	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15780
fragaria_vesca	FvH4_4g17920 FvH4_4g17920 FvH4_4g17920
malus_domestica	MD13G1169400.v1.1 MD16G1170600.v1.1
prunus_persica	Prupe.1G137700_v2.0.a1 Prupe.1G137700_v2.0.a1
pyrus_communis	pycom13g14500 pycom16g14300
rosa_chinensis	RchiOBHm_Chr4g0422091
rosa_laevigata	RLG00000007637
rosa_multiflora	Rmu_sc0009286.1_g000001 Rmu_sc0013978.1_g000003
rosa_roxburghii	Rroxscaffold_5G00364170
rosa_rugosa	Rorug04G0177100
rosa_samantha	Rh4AG236700 Rh4BG239500 Rh4CG251400 Rh4DG235600
rosa_wichuraiana	Rw4G020460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	95
AclWI	GGATC	1 cut(s)	43
AcoI	YGGCCR	2 cut(s)	33, 54
AcsI	RAATTY	1 cut(s)	326
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	1 cut(s)	178
AgsI	TTSAA	4 cut(s)	166, 268, 386, 397
AjnI	CCWGG	1 cut(s)	51
AjuI	GAANNNNNNNTTGG	4 cut(s)	119, 151, 569, 601
AluBI	AGCT	3 cut(s)	27, 260, 391
AluI	AGCT	3 cut(s)	27, 260, 391
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	1 cut(s)	43
AlwNI	CAGNNNCTG	1 cut(s)	115
AoxI	GGCC	3 cut(s)	33, 54, 516
ApoI	RAATTY	1 cut(s)	326
AspLEI	GCGC	2 cut(s)	100, 409
AspS9I	GGNCC	2 cut(s)	332, 517
AsuC2I	CCSGG	1 cut(s)	86
AsuHPI	GGTGA	3 cut(s)	64, 130, 146
AvaII	GGWCC	1 cut(s)	332
BalI	TGGCCA	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	351
BceAI	ACGGC	1 cut(s)	315
BciT130I	CCWGG	1 cut(s)	53
BciVI	GTATCC	1 cut(s)	179
BclI	TGATCA	1 cut(s)	367
BcnI	CCSGG	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	1 cut(s)	664
BfmI	CTRYAG	1 cut(s)	22
BfuI	GTATCC	1 cut(s)	179
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
Bme1390I	CCNGG	2 cut(s)	53, 86
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	2 cut(s)	332, 517
BmrFI	CCNGG	2 cut(s)	53, 86
BpmI	CTGGAG	1 cut(s)	92
BpuMI	CCSGG	1 cut(s)	86
Bsa29I	ATCGAT	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse118I	RCCGGY	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	53
BseCI	ATCGAT	1 cut(s)	233
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMII	CTCAG	2 cut(s)	57, 527
BsgI	GTGCAG	1 cut(s)	640
BshFI	GGCC	3 cut(s)	35, 56, 518
BshVI	ATCGAT	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	351
BsiSI	CCGG	2 cut(s)	75, 86
BslFI	GGGAC	1 cut(s)	553
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	553
BsnI	GGCC	3 cut(s)	35, 56, 518
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	5 cut(s)	48, 151, 367, 502, 615
BspACI	CCGC	1 cut(s)	95
BspANI	GGCC	3 cut(s)	35, 56, 518
BspCNI	CTCAG	2 cut(s)	58, 526
BspDI	ATCGAT	1 cut(s)	233
BspPI	GGATC	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	74
BssMI	GATC	5 cut(s)	48, 151, 367, 502, 615
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	2 cut(s)	197, 481
Bst6I	CTCTTC	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	224
BstDEI	CTNAG	2 cut(s)	66, 513
BstENI	CCTNNNNNAGG	1 cut(s)	176
BstHHI	GCGC	2 cut(s)	100, 409
BstKTI	GATC	5 cut(s)	51, 154, 370, 505, 618
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	5 cut(s)	48, 151, 367, 502, 615
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 299
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	51, 84
BstSFI	CTRYAG	1 cut(s)	22
Bsu15I	ATCGAT	1 cut(s)	233
BsuI	GTATCC	1 cut(s)	179
BsuRI	GGCC	3 cut(s)	35, 56, 518
BsuTUI	ATCGAT	1 cut(s)	233
BtsI	GCAGTG	1 cut(s)	107
BtsIMutI	CAGTG	2 cut(s)	63, 107
Cac8I	GCNNGC	1 cut(s)	224
CaiI	CAGNNNCTG	1 cut(s)	115
CfoI	GCGC	2 cut(s)	100, 409
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	2 cut(s)	332, 517
ClaI	ATCGAT	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	4 cut(s)	352, 371, 574, 644
CviJI	RGCY	9 cut(s)	27, 35, 56, 260, 302, 391, 455, 518, 631
CviKI_1	RGCY	9 cut(s)	27, 35, 56, 260, 302, 391, 455, 518, 631
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	2 cut(s)	66, 513
DpnI	GATC	5 cut(s)	50, 153, 369, 504, 617
DpnII	GATC	5 cut(s)	48, 151, 367, 502, 615
EaeI	YGGCCR	2 cut(s)	33, 54
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Eco32I	GATATC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	332
EcoNI	CCTNNNNNAGG	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	51
EcoRV	GATATC	1 cut(s)	231
FaeI	CATG	4 cut(s)	355, 374, 577, 647
FaiI	YATR	9 cut(s)	193, 279, 353, 360, 362, 372, 431, 575, 645
FaqI	GGGAC	1 cut(s)	553
FatI	CATG	4 cut(s)	351, 370, 573, 643
FbaI	TGATCA	1 cut(s)	367
Fnu4HI	GCNGC	1 cut(s)	96
Fsp4HI	GCNGC	1 cut(s)	96
FspBI	CTAG	1 cut(s)	664
GlaI	GCGC	2 cut(s)	99, 408
GluI	GCNGC	1 cut(s)	96
GsuI	CTGGAG	1 cut(s)	92
HaeIII	GGCC	3 cut(s)	35, 56, 518
HapII	CCGG	2 cut(s)	75, 86
HhaI	GCGC	2 cut(s)	100, 409
Hin1II	CATG	4 cut(s)	355, 374, 577, 647
Hin6I	GCGC	2 cut(s)	98, 407
HinP1I	GCGC	2 cut(s)	98, 407
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HinfI	GANTC	4 cut(s)	4, 11, 212, 600
HpaII	CCGG	2 cut(s)	75, 86
HphI	GGTGA	3 cut(s)	64, 130, 146
Hpy166II	GTNNAC	4 cut(s)	63, 72, 138, 490
Hpy188I	TCNGA	3 cut(s)	418, 599, 615
Hpy188III	TCNNGA	2 cut(s)	8, 109
Hpy8I	GTNNAC	4 cut(s)	63, 72, 138, 490
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	4 cut(s)	129, 172, 397, 546
HpyCH4III	ACNGT	2 cut(s)	197, 481
HpyCH4V	TGCA	3 cut(s)	239, 374, 657
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 299
HpyF3I	CTNAG	2 cut(s)	66, 513
Hsp92II	CATG	4 cut(s)	355, 374, 577, 647
HspAI	GCGC	2 cut(s)	98, 407
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	5 cut(s)	48, 151, 367, 502, 615
LpnPI	CCDG	9 cut(s)	38, 49, 65, 88, 99, 122, 488, 500, 613
MaeI	CTAG	1 cut(s)	664
MalI	GATC	5 cut(s)	50, 153, 369, 504, 617
MboI	GATC	5 cut(s)	48, 151, 367, 502, 615
MboII	GAAGA	3 cut(s)	389, 497, 589
MhlI	GDGCHC	1 cut(s)	351
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	3 cut(s)	166, 326, 363
MluNI	TGGCCA	1 cut(s)	35
MlyI	GAGTC	2 cut(s)	13, 206
MnlI	CCTC	6 cut(s)	32, 133, 172, 182, 458, 614
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	2 cut(s)	318, 423
Msp20I	TGGCCA	1 cut(s)	35
MspI	CCGG	2 cut(s)	75, 86
MspR9I	CCNGG	2 cut(s)	53, 86
MvaI	CCWGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	2 cut(s)	95, 299
NciI	CCSGG	1 cut(s)	86
NdeII	GATC	5 cut(s)	48, 151, 367, 502, 615
NlaIII	CATG	4 cut(s)	355, 374, 577, 647
NmeAIII	GCCGAG	1 cut(s)	82
PfeI	GAWTC	2 cut(s)	11, 600
PkrI	GCNGC	1 cut(s)	97
PleI	GAGTC	2 cut(s)	12, 206
PpsI	GAGTC	2 cut(s)	12, 206
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspPI	GGNCC	2 cut(s)	332, 517
PsrI	GAACNNNNNNTAC	2 cut(s)	53, 85
PstNI	CAGNNNCTG	1 cut(s)	115
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SaqAI	TTAA	2 cut(s)	318, 423
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	5 cut(s)	48, 151, 367, 502, 615
Sau96I	GGNCC	2 cut(s)	332, 517
SchI	GAGTC	2 cut(s)	13, 206
ScrFI	CCNGG	2 cut(s)	53, 86
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	6 cut(s)	29, 143, 164, 262, 393, 477
SfcI	CTRYAG	1 cut(s)	22
SinI	GGWCC	1 cut(s)	332
Sse9I	AATT	3 cut(s)	166, 326, 363
SsiI	CCGC	1 cut(s)	95
SspI	AATATT	1 cut(s)	445
SspMI	CTAG	1 cut(s)	664
StyD4I	CCNGG	2 cut(s)	51, 84
TaaI	ACNGT	2 cut(s)	197, 481
TaqI	TCGA	2 cut(s)	177, 233
TasI	AATT	3 cut(s)	166, 326, 363
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	2 cut(s)	11, 600
Tru1I	TTAA	2 cut(s)	318, 423
Tru9I	TTAA	2 cut(s)	318, 423
TscAI	CASTG	2 cut(s)	70, 107
TspDTI	ATGAA	4 cut(s)	7, 356, 368, 590
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	2 cut(s)	70, 107
VpaK11BI	GGWCC	1 cut(s)	332
XagI	CCTNNNNNAGG	1 cut(s)	176
XapI	RAATTY	1 cut(s)	326
XspI	CTAG	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.