pycom16g15360

Serine incorporator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0011082
Physical Location & Seq
Reverse (-)
11287826 .. 11290599
2774 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1230 bp
ATGTCGTGGTGCTTGTCCTGCTGCACCGCTTCCACCTGCGGCCTCTGTGGCTCCGTCGCCTCTGGGATTTCCAACAAGTCGGCCAGGCTTGCTTACTGCGGTCTCTTCGGGCTCTCCCTCATAGTTTCTTGGATTCTCAGAGAAGTTGGAGCTCCTCTCTTGAAGAAAATCCCATGGATAAGCTCTTCTGAGACACACACCAAGGTGTGGTATCAAACACAAGCGGTTCTTCGTGTGAGCATGGGGAATTTCTTGTTTTTCGCAGCATTTGCGCTTATAATGATTGGAGTTAAAGATCGAAATGACAGACGAGATTCCTGGCATCATGGTGGATGGATTGCCAAGATGGTGATCTGGCTTTTGCTTGTCATTCTCATGTTTTTCATGCCAGACATTGTCATTACAATCTATGGTGTCTTATCAAAATTTGGGGCAGGCTTATTTTTACTGGTTCAAGTGATTATCTTATTAGACTTTACTCACTCGTGGAATGATGCATGGGTGGAGAAAGATGAGCAAAAATGGTATATTGCTTTGCTTGTTGTATCAATTGTATGCTACCTTGCAGCATTTGCGTTCTCAGGCGTTCTGTTCATTTGGTTCAACCCCTCCGGCGAAGACTGTGGCCTTAATATCTTCTTTATTGTCATGACAATGATTCTCGCATTTGGATTTGCAGTTATTGCATTACACCCGAAGGTGAATGGCAGCCTCCTCCCTGCTTCGGTGATATCTGTTTATAGTGCTTATGTGTGCTTCACGGCTCTTTCCAGTGAACCTCGTGACTACGCTTGCAATGGTCTTCACCATTCCAAAGCAGTCTCTGTGAGTACCCTTCTTCTTGGGATGGCGACGACTGTTCTTTCAGTTTTGTATTCTGCCCTTCGTGCTGGATCATCAACAACTTTTTTATCACCGCCAACTTCACCTAAGGGAGCTGCAAAGACACCTCTTCTTGACGGCAAAAAATTGGAAGAAGGGAAAGAGAAGGAGGACAAAGAAGCAAAACCCGTCAGTTATTCCTATACGTTTTTCCATCTGATATTTGCCTTGGCTAGCATGTATTCAGCCATGCTGCTTTCGGGTTGGACCGACTCATCAGAGAGCTCAGATCTCATTGACGTTGGCTGGACATCGGTTTGGGTCCGAATCTGCACAGAATGGGTTACTGCTGCAATATACGTTTGGTCCCTCGTCGCTCCTTTACTTTTCCCTGATCGCGAGTTCTAG

Protein Analysis

410

Amino Acids

45.17

Weight (kDa)

7.05

Isoelectric Point (pI)

32.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serinc PF03348 6 - 407 2e-121 Serine incorporator (Serinc)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 278
AarI CACCTGC 1 cut(s) 44
Acc36I ACCTGC 1 cut(s) 44
AccB7I CCANNNNNTGG 1 cut(s) 207
AccII CGCG 1 cut(s) 1221
AciI CCGC 5 cut(s) 27, 39, 99, 224, 917
AclWI GGATC 1 cut(s) 901
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 2 cut(s) 247, 425
AfaI GTAC 1 cut(s) 832
AfiI CCNNNNNNNGG 2 cut(s) 207, 724
AgsI TTSAA 3 cut(s) 163, 455, 604
AjnI CCWGG 2 cut(s) 83, 317
AleI CACNNNNGTG 1 cut(s) 203
AluBI AGCT 4 cut(s) 152, 183, 938, 1107
AluI AGCT 4 cut(s) 152, 183, 938, 1107
Alw21I GWGCWC 2 cut(s) 154, 1109
Alw26I GTCTC 3 cut(s) 107, 185, 826
AlwI GGATC 1 cut(s) 901
AlwNI CAGNNNCTG 1 cut(s) 824
AoxI GGCC 3 cut(s) 40, 81, 625
ApeKI GCWGC 7 cut(s) 21, 263, 566, 708, 938, 1075, 1172
ApoI RAATTY 2 cut(s) 247, 425
AspLEI GCGC 1 cut(s) 274
AspS9I GGNCC 3 cut(s) 1089, 1144, 1188
AsuHPI GGTGA 6 cut(s) 361, 712, 739, 797, 906, 918
AsuNHI GCTAGC 1 cut(s) 1055
AvaII GGWCC 3 cut(s) 1089, 1144, 1188
AxyI CCTNAGG 1 cut(s) 930
BanII GRGCYC 3 cut(s) 114, 154, 1109
BauI CACGAG 2 cut(s) 484, 780
BbsI GAAGAC 2 cut(s) 624, 794
Bbv12I GWGCWC 2 cut(s) 154, 1109
BbvI GCAGC 7 cut(s) 8, 275, 578, 720, 925, 1062, 1159
BccI CCATC 4 cut(s) 327, 340, 841, 1044
BceAI ACGGC 2 cut(s) 777, 976
BciT130I CCWGG 2 cut(s) 85, 319
BcoDI GTCTC 3 cut(s) 107, 185, 826
BfaI CTAG 2 cut(s) 1056, 1228
BfuAI ACCTGC 1 cut(s) 44
BglI GCCNNNNNGGC 1 cut(s) 48
BglII AGATCT 1 cut(s) 1111
BisI GCNGC 8 cut(s) 22, 40, 264, 567, 709, 939, 1076, 1173
BlsI GCNGC 8 cut(s) 23, 41, 265, 568, 710, 940, 1077, 1174
Bme1390I CCNGG 2 cut(s) 85, 319
Bme18I GGWCC 3 cut(s) 1089, 1144, 1188
BmgT120I GGNCC 3 cut(s) 1089, 1144, 1188
BmiI GGNNCC 3 cut(s) 52, 1145, 1190
BmrFI CCNGG 2 cut(s) 85, 319
BmsI GCATC 2 cut(s) 331, 484
BmtI GCTAGC 1 cut(s) 1059
BpiI GAAGAC 2 cut(s) 624, 794
BplI GAGNNNNNCTC 2 cut(s) 141, 173
BsaBI GATNNNNATC 1 cut(s) 350
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 3 cut(s) 173, 201, 1050
Bsc4I CCNNNNNNNGG 2 cut(s) 207, 724
Bse1I ACTGG 2 cut(s) 453, 771
Bse21I CCTNAGG 1 cut(s) 930
Bse3DI GCAATG 1 cut(s) 802
Bse8I GATNNNNATC 1 cut(s) 350
BseBI CCWGG 2 cut(s) 85, 319
BseDI CCNNGG 3 cut(s) 173, 201, 1050
BseGI GGATG 2 cut(s) 338, 852
BseJI GATNNNNATC 1 cut(s) 350
BseLI CCNNNNNNNGG 2 cut(s) 207, 724
BseMI GCAATG 1 cut(s) 802
BseMII CTCAG 4 cut(s) 151, 180, 594, 1122
BseNI ACTGG 2 cut(s) 453, 771
BseRI GAGGAG 2 cut(s) 144, 704
BseXI GCAGC 7 cut(s) 8, 275, 578, 720, 925, 1062, 1159
BsgI GTGCAG 2 cut(s) 7, 1138
Bsh1236I CGCG 1 cut(s) 1221
BshFI GGCC 3 cut(s) 42, 83, 627
BsiHKAI GWGCWC 2 cut(s) 154, 1109
BsiSI CCGG 1 cut(s) 612
BslFI GGGAC 1 cut(s) 1174
BslI CCNNNNNNNGG 2 cut(s) 207, 724
BsmAI GTCTC 3 cut(s) 107, 185, 826
BsmFI GGGAC 1 cut(s) 1174
BsnI GGCC 3 cut(s) 42, 83, 627
Bso31I GGTCTC 1 cut(s) 107
Bsp1286I GDGCHC 3 cut(s) 114, 154, 1109
Bsp143I GATC 5 cut(s) 295, 351, 893, 1111, 1216
Bsp19I CCATGG 1 cut(s) 173
Bsp68I TCGCGA 1 cut(s) 1221
BspACI CCGC 5 cut(s) 27, 39, 99, 224, 917
BspANI GGCC 3 cut(s) 42, 83, 627
BspCNI CTCAG 4 cut(s) 150, 181, 593, 1121
BspFNI CGCG 1 cut(s) 1221
BspHI TCATGA 1 cut(s) 648
BspLI GGNNCC 3 cut(s) 52, 1145, 1190
BspMI ACCTGC 1 cut(s) 44
BspOI GCTAGC 1 cut(s) 1059
BspPI GGATC 1 cut(s) 901
BspQI GCTCTTC 1 cut(s) 190
BspTNI GGTCTC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 802
BsrI ACTGG 2 cut(s) 453, 771
BssECI CCNNGG 3 cut(s) 173, 201, 1050
BssMI GATC 5 cut(s) 295, 351, 893, 1111, 1216
BssSI CACGAG 2 cut(s) 484, 780
BssT1I CCWWGG 3 cut(s) 173, 201, 1050
Bst2BI CACGAG 2 cut(s) 484, 780
Bst2UI CCWGG 2 cut(s) 85, 319
Bst4CI ACNGT 2 cut(s) 623, 859
Bst6I CTCTTC 3 cut(s) 110, 190, 957
BstAPI GCANNNNNTGC 3 cut(s) 269, 572, 683
BstC8I GCNNGC 4 cut(s) 90, 436, 793, 1057
BstDEI CTNAG 5 cut(s) 137, 189, 580, 930, 1108
BstDSI CCRYGG 1 cut(s) 173
BstF5I GGATG 2 cut(s) 338, 852
BstFNI CGCG 1 cut(s) 1221
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 5 cut(s) 298, 354, 896, 1114, 1219
BstMAI GTCTC 3 cut(s) 107, 185, 826
BstMBI GATC 5 cut(s) 295, 351, 893, 1111, 1216
BstMWI GCNNNNNNNGC 7 cut(s) 18, 48, 89, 269, 572, 683, 887
BstNI CCWGG 2 cut(s) 85, 319
BstNSI RCATGY 1 cut(s) 1063
BstSCI CCNGG 2 cut(s) 83, 317
BstUI CGCG 1 cut(s) 1221
BstV1I GCAGC 7 cut(s) 8, 275, 578, 720, 925, 1062, 1159
BstV2I GAAGAC 2 cut(s) 624, 794
BstX2I RGATCY 1 cut(s) 1111
BstYI RGATCY 1 cut(s) 1111
Bsu36I CCTNAGG 1 cut(s) 930
BsuRI GGCC 3 cut(s) 42, 83, 627
BtgI CCRYGG 1 cut(s) 173
BtsCI GGATG 2 cut(s) 338, 852
BtsIMutI CAGTG 1 cut(s) 778
BtuMI TCGCGA 1 cut(s) 1221
BveI ACCTGC 1 cut(s) 44
Cac8I GCNNGC 4 cut(s) 90, 436, 793, 1057
CaiI CAGNNNCTG 1 cut(s) 824
CciI TCATGA 1 cut(s) 648
CfoI GCGC 1 cut(s) 274
Cfr13I GGNCC 3 cut(s) 1089, 1144, 1188
Csp6I GTAC 1 cut(s) 831
CviAII CATG 9 cut(s) 174, 241, 326, 376, 385, 498, 649, 1060, 1072
CviQI GTAC 1 cut(s) 831
DdeI CTNAG 5 cut(s) 137, 189, 580, 930, 1108
DpnI GATC 5 cut(s) 297, 353, 895, 1113, 1218
DpnII GATC 5 cut(s) 295, 351, 893, 1111, 1216
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 3 cut(s) 110, 190, 957
EarI CTCTTC 3 cut(s) 110, 190, 957
Ecl136II GAGCTC 2 cut(s) 152, 1107
Eco130I CCWWGG 3 cut(s) 173, 201, 1050
Eco24I GRGCYC 3 cut(s) 114, 154, 1109
Eco31I GGTCTC 1 cut(s) 107
Eco32I GATATC 1 cut(s) 732
Eco47I GGWCC 3 cut(s) 1089, 1144, 1188
Eco53kI GAGCTC 2 cut(s) 152, 1107
Eco81I CCTNAGG 1 cut(s) 930
EcoICRI GAGCTC 2 cut(s) 152, 1107
EcoRII CCWGG 2 cut(s) 83, 317
EcoRV GATATC 1 cut(s) 732
EcoT14I CCWWGG 3 cut(s) 173, 201, 1050
EcoT22I ATGCAT 1 cut(s) 499
EcoT38I GRGCYC 3 cut(s) 114, 154, 1109
ErhI CCWWGG 3 cut(s) 173, 201, 1050
FaeI CATG 9 cut(s) 177, 244, 329, 379, 388, 501, 652, 1063, 1075
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FaqI GGGAC 1 cut(s) 1174
FatI CATG 9 cut(s) 173, 240, 325, 375, 384, 497, 648, 1059, 1071
Fnu4HI GCNGC 8 cut(s) 22, 40, 264, 567, 709, 939, 1076, 1173
FokI GGATG 2 cut(s) 345, 859
FriOI GRGCYC 3 cut(s) 114, 154, 1109
Fsp4HI GCNGC 8 cut(s) 22, 40, 264, 567, 709, 939, 1076, 1173
FspBI CTAG 2 cut(s) 1056, 1228
GlaI GCGC 1 cut(s) 273
GluI GCNGC 8 cut(s) 22, 40, 264, 567, 709, 939, 1076, 1173
HaeIII GGCC 3 cut(s) 42, 83, 627
HapII CCGG 1 cut(s) 612
HhaI GCGC 1 cut(s) 274
Hin1II CATG 9 cut(s) 177, 244, 329, 379, 388, 501, 652, 1063, 1075
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HinfI GANTC 5 cut(s) 133, 314, 658, 1094, 1149
HpaII CCGG 1 cut(s) 612
HphI GGTGA 6 cut(s) 361, 712, 739, 797, 906, 918
Hpy166II GTNNAC 1 cut(s) 776
Hpy188I TCNGA 6 cut(s) 140, 190, 1041, 1102, 1111, 1148
Hpy188III TCNNGA 5 cut(s) 160, 649, 782, 956, 1220
Hpy8I GTNNAC 1 cut(s) 776
Hpy99I CGWCG 3 cut(s) 59, 856, 1199
HpyAV CCTTC 5 cut(s) 691, 845, 893, 971, 982
HpyCH4III ACNGT 2 cut(s) 623, 859
HpyCH4IV ACGT 3 cut(s) 1028, 1122, 1182
HpyCH4V TGCA 9 cut(s) 24, 497, 566, 677, 686, 795, 941, 1155, 1175
HpyF10VI GCNNNNNNNGC 7 cut(s) 18, 48, 89, 269, 572, 683, 887
HpyF3I CTNAG 5 cut(s) 137, 189, 580, 930, 1108
HpySE526I ACGT 3 cut(s) 1028, 1122, 1182
Hsp92II CATG 9 cut(s) 177, 244, 329, 379, 388, 501, 652, 1063, 1075
HspAI GCGC 1 cut(s) 272
Kzo9I GATC 5 cut(s) 295, 351, 893, 1111, 1216
LguI GCTCTTC 1 cut(s) 190
LmnI GCTCC 5 cut(s) 56, 149, 157, 935, 1204
Lsp1109I GCAGC 7 cut(s) 8, 275, 578, 720, 925, 1062, 1159
LweI GCATC 2 cut(s) 331, 484
MaeI CTAG 2 cut(s) 1056, 1228
MaeII ACGT 3 cut(s) 1028, 1122, 1182
MaeIII GTNAC 2 cut(s) 782, 1165
MalI GATC 5 cut(s) 297, 353, 895, 1113, 1218
MboI GATC 5 cut(s) 295, 351, 893, 1111, 1216
MfeI CAATTG 1 cut(s) 549
MflI RGATCY 1 cut(s) 1111
MhlI GDGCHC 3 cut(s) 114, 154, 1109
MluCI AATT 4 cut(s) 247, 425, 549, 968
MlyI GAGTC 1 cut(s) 1088
MmeI TCCRAC 3 cut(s) 96, 127, 1067
Mph1103I ATGCAT 1 cut(s) 499
MseI TTAA 2 cut(s) 291, 630
MslI CAYNNNNRTG 4 cut(s) 203, 327, 374, 653
MspI CCGG 1 cut(s) 612
MspR9I CCNGG 2 cut(s) 85, 319
MunI CAATTG 1 cut(s) 549
MvaI CCWGG 2 cut(s) 85, 319
MvnI CGCG 1 cut(s) 1221
MwoI GCNNNNNNNGC 7 cut(s) 18, 48, 89, 269, 572, 683, 887
NcoI CCATGG 1 cut(s) 173
NdeII GATC 5 cut(s) 295, 351, 893, 1111, 1216
NheI GCTAGC 1 cut(s) 1055
NlaIII CATG 9 cut(s) 177, 244, 329, 379, 388, 501, 652, 1063, 1075
NlaIV GGNNCC 3 cut(s) 52, 1145, 1190
NmuCI GTSAC 1 cut(s) 782
NruI TCGCGA 1 cut(s) 1221
NsiI ATGCAT 1 cut(s) 499
NspI RCATGY 1 cut(s) 1063
OliI CACNNNNGTG 1 cut(s) 203
PagI TCATGA 1 cut(s) 648
PaqCI CACCTGC 1 cut(s) 44
PciSI GCTCTTC 1 cut(s) 190
PfeI GAWTC 4 cut(s) 133, 314, 658, 1149
PflFI GACNNNGTC 1 cut(s) 395
PflMI CCANNNNNTGG 1 cut(s) 207
PkrI GCNGC 8 cut(s) 23, 41, 265, 568, 710, 940, 1077, 1174
PleI GAGTC 1 cut(s) 1088
PpsI GAGTC 1 cut(s) 1088
PsiI TTATAA 1 cut(s) 278
Psp124BI GAGCTC 2 cut(s) 154, 1109
Psp6I CCWGG 2 cut(s) 83, 317
PspGI CCWGG 2 cut(s) 83, 317
PspN4I GGNNCC 3 cut(s) 52, 1145, 1190
PspPI GGNCC 3 cut(s) 1089, 1144, 1188
PstNI CAGNNNCTG 1 cut(s) 824
PsuI RGATCY 1 cut(s) 1111
PsyI GACNNNGTC 1 cut(s) 395
RruI TCGCGA 1 cut(s) 1221
RsaI GTAC 1 cut(s) 832
RsaNI GTAC 1 cut(s) 831
RseI CAYNNNNRTG 4 cut(s) 203, 327, 374, 653
SacI GAGCTC 2 cut(s) 154, 1109
SapI GCTCTTC 1 cut(s) 190
SaqAI TTAA 2 cut(s) 291, 630
SatI GCNGC 8 cut(s) 22, 40, 264, 567, 709, 939, 1076, 1173
Sau3AI GATC 5 cut(s) 295, 351, 893, 1111, 1216
Sau96I GGNCC 3 cut(s) 1089, 1144, 1188
SchI GAGTC 1 cut(s) 1088
ScrFI CCNGG 2 cut(s) 85, 319
SduI GDGCHC 3 cut(s) 114, 154, 1109
SfaNI GCATC 2 cut(s) 331, 484
SinI GGWCC 3 cut(s) 1089, 1144, 1188
SmiMI CAYNNNNRTG 4 cut(s) 203, 327, 374, 653
Sse9I AATT 4 cut(s) 247, 425, 549, 968
SsiI CCGC 5 cut(s) 27, 39, 99, 224, 917
SspMI CTAG 2 cut(s) 1056, 1228
SstI GAGCTC 2 cut(s) 154, 1109
StyD4I CCNGG 2 cut(s) 83, 317
StyI CCWWGG 3 cut(s) 173, 201, 1050
TaaI ACNGT 2 cut(s) 623, 859
TaiI ACGT 3 cut(s) 1031, 1125, 1185
TaqI TCGA 1 cut(s) 298
TaqII GACCGA 1 cut(s) 1106
TasI AATT 4 cut(s) 247, 425, 549, 968
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 4 cut(s) 133, 314, 658, 1149
Tru1I TTAA 2 cut(s) 291, 630
Tru9I TTAA 2 cut(s) 291, 630
TscAI CASTG 1 cut(s) 778
TseFI GTSAC 1 cut(s) 782
TseI GCWGC 7 cut(s) 21, 263, 566, 708, 938, 1075, 1172
Tsp45I GTSAC 1 cut(s) 782
TspDTI ATGAA 2 cut(s) 373, 583
TspGWI ACGGA 1 cut(s) 43
TspRI CASTG 1 cut(s) 778
Tth111I GACNNNGTC 1 cut(s) 395
Van91I CCANNNNNTGG 1 cut(s) 207
VpaK11BI GGWCC 3 cut(s) 1089, 1144, 1188
XapI RAATTY 2 cut(s) 247, 425
XceI RCATGY 1 cut(s) 1063
XspI CTAG 2 cut(s) 1056, 1228
Zsp2I ATGCAT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.