pycom16g16710

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0012537
Physical Location & Seq
Forward (+)
12592864 .. 12597627
4764 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 999 bp
ATGGCGGAAGCAGAGGGGGGAGGATCAGGTAGGGCGGGCGCATCGGCTGGAGGTGGAGGAGCTGAGTCTCTGAAAGATAAAGGAAATGAGCAGTTCAAAGCAGGGAACTACCTCAAGGCCGCTGCGCTCTACACTCAGGCCATCAAGAAAGACCCCAATAACCCCACTCTCTATAGCAACCGTGCTGCAGCATTTCTTCAATTGGTTAAGCTTAGCAAAGCCCTTGCTGATGCGGAGACAACAATTAAATTGAACCACCAGTGGGAGAAGGGATATTTCAGGAAAGGTTGTGTATTAGAGGCCATGGAACAATATGATGATGCTTTGGCTGCTTTCCAAACAGCTTTGCAATATAACTCGCAAAGCACAGAAGTATCAAGAAAGATAAAAAGGATTTATCAGTTGGTGAGAGATAAAACGCGTGCAGAAGAGGTGGAGAAGATGAGATCCAATGTTGATATGGCGATGCATTTAGATAAACTGAAATCTGAAATGTCTGTGAAGCGTGGATCTGAAGAATGTTGGGAAGAATTGTTTTCTTTCCTTGTTGAGACAATGGAGTCAGCTGTAAAATCATGGCATGAAACTTCTAAAGTGGAGGCTAGAGTTTACTTTCTCCTAGATAAGGAAACAACAGACACCGAGAAATATGCTCCAGCTGTGAATATTGATAAGGCCTTTGAATCACCCCATACACATGGTAGTTGTTTTTCATTTCTTAGGCAGTATGCTGAGGATTCTTTCTCCAGAGCAGCTTGCTTGGTGACTCCCAAAAGTATCATGTCATATCCACAGGTTTGGAAAGGTCAAGGATCAAGGAAATGGAAACACGGGCAACATGATGGTTTCTTTGTGCAATTTGAGACCCCTTTCCTGCGGAAGCTGTGGTTTATTTCTAGTTCTAGTGAACTGGGCCAGACATTGTGCAGGGATCCGGAGGAGTTAGACATCGGTGCCCATGAATTGATTCCGCGCCTATTCAAACAGTCCAATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0042802 GO:0042803 GO:0046982 GO:0046983
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_11 TPR_2 TPR_8

Protein Analysis

333

Amino Acids

37.42

Weight (kDa)

7.09

Isoelectric Point (pI)

43.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_BSK1_C PF25575 24 - 91 7.2e-06 Serine/threonine-protein kinase BSK1-like, TPR repeats
TPR_16 PF13432 26 - 77 1.6e-06 Tetratricopeptide repeat
TPR_11 PF13414 28 - 68 1.5e-08 TPR repeat
TPR_1 PF00515 90 - 120 7.9e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012537)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04190
fragaria_vesca FvH4_4g00880 FvH4_4g00880
malus_domestica MD13G1198100.v1.1 MD16G1198200.v1.1
prunus_persica Prupe.1G019800_v2.0.a1
pyrus_communis pycom13g17180 pycom16g16710
rosa_chinensis RchiOBHm_Chr4g0387501
rosa_laevigata RLG00000010117
rosa_multiflora Rmu_sc0009161.1_g000001 Rmu_sc0011414.1_g000005
rosa_roxburghii Rroxscaffold_5G00334180
rosa_rugosa Rorug03G0310200
rosa_samantha Rh4AG016300 Rh4BG011000 Rh4CG017500 Rh4DG012200
rosa_wichuraiana Rw4G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 559
AccB1I GGYRCC 1 cut(s) 953
AccII CGCG 2 cut(s) 421, 973
AccIII TCCGGA 1 cut(s) 934
AciI CCGC 6 cut(s) 5, 35, 120, 233, 877, 971
AclWI GGATC 6 cut(s) 31, 441, 517, 820, 926, 939
AcuI CTGAAG 1 cut(s) 534
AfiI CCNNNNNNNGG 2 cut(s) 262, 625
AflIII ACRYGT 1 cut(s) 419
AgsI TTSAA 5 cut(s) 97, 200, 253, 683, 982
AluBI AGCT 7 cut(s) 62, 211, 344, 566, 659, 755, 883
AluI AGCT 7 cut(s) 62, 211, 344, 566, 659, 755, 883
Alw26I GTCTC 4 cut(s) 72, 230, 545, 857
AlwI GGATC 6 cut(s) 31, 441, 517, 820, 926, 939
Aor13HI TCCGGA 1 cut(s) 934
AoxI GGCC 5 cut(s) 117, 138, 300, 675, 913
ApeKI GCWGC 5 cut(s) 122, 185, 188, 329, 752
Asp700I GAANNNNTTC 1 cut(s) 966
AspLEI GCGC 3 cut(s) 41, 127, 975
AspS9I GGNCC 1 cut(s) 913
AsuHPI GGTGA 3 cut(s) 418, 678, 775
BaeGI GKGCMC 1 cut(s) 958
BaeI ACNNNNGTAYC 2 cut(s) 357, 390
BamHI GGATCC 1 cut(s) 931
BanI GGYRCC 1 cut(s) 953
BbvCI CCTCAGC 1 cut(s) 732
BbvI GCAGC 5 cut(s) 109, 172, 200, 316, 764
BccI CCATC 2 cut(s) 149, 836
BcgI CGANNNNNNTGC 2 cut(s) 632, 666
BcoDI GTCTC 4 cut(s) 72, 230, 545, 857
BfaI CTAG 4 cut(s) 603, 620, 897, 903
BfmI CTRYAG 2 cut(s) 172, 186
BisI GCNGC 6 cut(s) 120, 123, 186, 189, 330, 753
BlpI GCTNAGC 1 cut(s) 212
BlsI GCNGC 6 cut(s) 121, 124, 187, 190, 331, 754
BmgT120I GGNCC 1 cut(s) 913
BmiI GGNNCC 2 cut(s) 933, 955
BmrI ACTGGG 1 cut(s) 920
BmsI GCATC 4 cut(s) 50, 220, 310, 456
BmuI ACTGGG 1 cut(s) 920
BpmI CTGGAG 3 cut(s) 69, 639, 730
Bpu10I CCTNAGC 1 cut(s) 732
Bpu1102I GCTNAGC 1 cut(s) 212
BpuEI CTTGAG 1 cut(s) 98
BsaI GGTCTC 1 cut(s) 857
BsaJI CCNNGG 1 cut(s) 303
BsaWI WCCGGW 1 cut(s) 934
Bsc4I CCNNNNNNNGG 2 cut(s) 262, 625
Bse1I ACTGG 2 cut(s) 259, 915
BseAI TCCGGA 1 cut(s) 934
BseDI CCNNGG 1 cut(s) 303
BseLI CCNNNNNNNGG 2 cut(s) 262, 625
BseMII CTCAG 3 cut(s) 54, 149, 723
BseNI ACTGG 2 cut(s) 259, 915
BseRI GAGGAG 2 cut(s) 72, 953
BseSI GKGCMC 1 cut(s) 958
BseXI GCAGC 5 cut(s) 109, 172, 200, 316, 764
BsgI GTGCAG 2 cut(s) 444, 946
Bsh1236I CGCG 2 cut(s) 421, 973
BshFI GGCC 5 cut(s) 119, 140, 302, 677, 915
BshNI GGYRCC 1 cut(s) 953
BsiSI CCGG 1 cut(s) 935
BslI CCNNNNNNNGG 2 cut(s) 262, 625
BsmAI GTCTC 4 cut(s) 72, 230, 545, 857
BsnI GGCC 5 cut(s) 119, 140, 302, 677, 915
Bso31I GGTCTC 1 cut(s) 857
Bsp1286I GDGCHC 1 cut(s) 958
Bsp13I TCCGGA 1 cut(s) 934
Bsp143I GATC 5 cut(s) 23, 446, 509, 812, 931
Bsp1720I GCTNAGC 1 cut(s) 212
Bsp19I CCATGG 1 cut(s) 303
BspACI CCGC 6 cut(s) 5, 35, 120, 233, 877, 971
BspANI GGCC 5 cut(s) 119, 140, 302, 677, 915
BspCNI CTCAG 3 cut(s) 55, 148, 724
BspEI TCCGGA 1 cut(s) 934
BspFNI CGCG 2 cut(s) 421, 973
BspLI GGNNCC 2 cut(s) 933, 955
BspMAI CTGCAG 1 cut(s) 190
BspPI GGATC 6 cut(s) 31, 441, 517, 820, 926, 939
BspT107I GGYRCC 1 cut(s) 953
BspTNI GGTCTC 1 cut(s) 857
BsrI ACTGG 2 cut(s) 259, 915
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 5 cut(s) 23, 446, 509, 812, 931
BssT1I CCWWGG 1 cut(s) 303
Bst4CI ACNGT 2 cut(s) 182, 987
Bst6I CTCTTC 1 cut(s) 423
BstC8I GCNNGC 3 cut(s) 37, 423, 757
BstDEI CTNAG 5 cut(s) 63, 135, 212, 719, 732
BstDSI CCRYGG 1 cut(s) 303
BstENI CCTNNNNNAGG 1 cut(s) 623
BstFNI CGCG 2 cut(s) 421, 973
BstHHI GCGC 3 cut(s) 41, 127, 975
BstKTI GATC 5 cut(s) 26, 449, 512, 815, 934
BstMAI GTCTC 4 cut(s) 72, 230, 545, 857
BstMBI GATC 5 cut(s) 23, 446, 509, 812, 931
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstSFI CTRYAG 2 cut(s) 172, 186
BstSLI GKGCMC 1 cut(s) 958
BstUI CGCG 2 cut(s) 421, 973
BstV1I GCAGC 5 cut(s) 109, 172, 200, 316, 764
BstX2I RGATCY 3 cut(s) 446, 509, 931
BstXI CCANNNNNNTGG 2 cut(s) 698, 798
BstYI RGATCY 3 cut(s) 446, 509, 931
BsuRI GGCC 5 cut(s) 119, 140, 302, 677, 915
BtgI CCRYGG 1 cut(s) 303
BtgZI GCGATG 1 cut(s) 479
BtsIMutI CAGTG 1 cut(s) 266
Cac8I GCNNGC 3 cut(s) 37, 423, 757
CfoI GCGC 3 cut(s) 41, 127, 975
Cfr13I GGNCC 1 cut(s) 913
CviAII CATG 7 cut(s) 304, 576, 581, 698, 781, 839, 959
DdeI CTNAG 5 cut(s) 63, 135, 212, 719, 732
DpnI GATC 5 cut(s) 25, 448, 511, 814, 933
DpnII GATC 5 cut(s) 23, 446, 509, 812, 931
DrdI GACNNNNNNGTC 1 cut(s) 559
DseDI GACNNNNNNGTC 1 cut(s) 559
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 303
Eco147I AGGCCT 1 cut(s) 677
Eco31I GGTCTC 1 cut(s) 857
Eco57I CTGAAG 1 cut(s) 534
EcoNI CCTNNNNNAGG 1 cut(s) 623
EcoT14I CCWWGG 1 cut(s) 303
EcoT22I ATGCAT 1 cut(s) 471
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 7 cut(s) 307, 579, 584, 701, 784, 842, 962
FatI CATG 7 cut(s) 303, 575, 580, 697, 780, 838, 958
FauI CCCGC 1 cut(s) 28
Fnu4HI GCNGC 6 cut(s) 120, 123, 186, 189, 330, 753
Fsp4HI GCNGC 6 cut(s) 120, 123, 186, 189, 330, 753
FspBI CTAG 4 cut(s) 603, 620, 897, 903
GlaI GCGC 3 cut(s) 40, 126, 974
GluI GCNGC 6 cut(s) 120, 123, 186, 189, 330, 753
GsuI CTGGAG 3 cut(s) 69, 639, 730
HaeIII GGCC 5 cut(s) 119, 140, 302, 677, 915
HapII CCGG 1 cut(s) 935
HhaI GCGC 3 cut(s) 41, 127, 975
Hin1II CATG 7 cut(s) 307, 579, 584, 701, 784, 842, 962
Hin6I GCGC 3 cut(s) 39, 125, 973
HinP1I GCGC 3 cut(s) 39, 125, 973
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 6 cut(s) 65, 560, 683, 737, 766, 967
HpaII CCGG 1 cut(s) 935
HphI GGTGA 3 cut(s) 418, 678, 775
Hpy166II GTNNAC 2 cut(s) 610, 908
Hpy188I TCNGA 3 cut(s) 72, 490, 514
Hpy188III TCNNGA 5 cut(s) 145, 280, 378, 747, 935
Hpy8I GTNNAC 2 cut(s) 610, 908
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 2 cut(s) 182, 987
HpyCH4V TGCA 6 cut(s) 188, 349, 425, 469, 856, 927
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 5 cut(s) 63, 135, 212, 719, 732
Hsp92II CATG 7 cut(s) 307, 579, 584, 701, 784, 842, 962
HspAI GCGC 3 cut(s) 39, 125, 973
Kpn2I TCCGGA 1 cut(s) 934
Kzo9I GATC 5 cut(s) 23, 446, 509, 812, 931
LmnI GCTCC 2 cut(s) 59, 658
Lsp1109I GCAGC 5 cut(s) 109, 172, 200, 316, 764
LweI GCATC 4 cut(s) 50, 220, 310, 456
MaeI CTAG 4 cut(s) 603, 620, 897, 903
MaeIII GTNAC 1 cut(s) 763
MalI GATC 5 cut(s) 25, 448, 511, 814, 933
MboI GATC 5 cut(s) 23, 446, 509, 812, 931
MboII GAAGA 5 cut(s) 188, 440, 451, 527, 539
MfeI CAATTG 1 cut(s) 200
MflI RGATCY 3 cut(s) 446, 509, 931
MhlI GDGCHC 1 cut(s) 958
MluCI AATT 7 cut(s) 200, 243, 248, 530, 857, 962, 991
MluI ACGCGT 1 cut(s) 419
MlyI GAGTC 3 cut(s) 74, 569, 760
Mph1103I ATGCAT 1 cut(s) 471
MroI TCCGGA 1 cut(s) 934
MroXI GAANNNNTTC 1 cut(s) 966
MseI TTAA 2 cut(s) 207, 246
MslI CAYNNNNRTG 1 cut(s) 696
MspA1I CMGCKG 3 cut(s) 122, 566, 659
MspI CCGG 1 cut(s) 935
MunI CAATTG 1 cut(s) 200
MvnI CGCG 2 cut(s) 421, 973
MwoI GCNNNNNNNGC 1 cut(s) 329
NcoI CCATGG 1 cut(s) 303
NdeII GATC 5 cut(s) 23, 446, 509, 812, 931
NlaIII CATG 7 cut(s) 307, 579, 584, 701, 784, 842, 962
NlaIV GGNNCC 2 cut(s) 933, 955
NmuCI GTSAC 1 cut(s) 763
NsiI ATGCAT 1 cut(s) 471
PceI AGGCCT 1 cut(s) 677
PdmI GAANNNNTTC 1 cut(s) 966
PfeI GAWTC 3 cut(s) 683, 737, 967
PkrI GCNGC 6 cut(s) 121, 124, 187, 190, 331, 754
PleI GAGTC 3 cut(s) 73, 568, 760
PpsI GAGTC 3 cut(s) 73, 568, 760
PspN4I GGNNCC 2 cut(s) 933, 955
PspPI GGNCC 1 cut(s) 913
PstI CTGCAG 1 cut(s) 190
PsuI RGATCY 3 cut(s) 446, 509, 931
PvuII CAGCTG 2 cut(s) 566, 659
RseI CAYNNNNRTG 1 cut(s) 696
SaqAI TTAA 2 cut(s) 207, 246
SatI GCNGC 6 cut(s) 120, 123, 186, 189, 330, 753
Sau3AI GATC 5 cut(s) 23, 446, 509, 812, 931
Sau96I GGNCC 1 cut(s) 913
SchI GAGTC 3 cut(s) 74, 569, 760
SduI GDGCHC 1 cut(s) 958
SfaNI GCATC 4 cut(s) 50, 220, 310, 456
SfcI CTRYAG 2 cut(s) 172, 186
SmiMI CAYNNNNRTG 1 cut(s) 696
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 7 cut(s) 200, 243, 248, 530, 857, 962, 991
SseBI AGGCCT 1 cut(s) 677
SsiI CCGC 6 cut(s) 5, 35, 120, 233, 877, 971
SspI AATATT 1 cut(s) 667
SspMI CTAG 4 cut(s) 603, 620, 897, 903
StuI AGGCCT 1 cut(s) 677
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 2 cut(s) 182, 987
TasI AATT 7 cut(s) 200, 243, 248, 530, 857, 962, 991
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 3 cut(s) 683, 737, 967
Tru1I TTAA 2 cut(s) 207, 246
Tru9I TTAA 2 cut(s) 207, 246
TscAI CASTG 1 cut(s) 266
TseFI GTSAC 1 cut(s) 763
TseI GCWGC 5 cut(s) 122, 185, 188, 329, 752
Tsp45I GTSAC 1 cut(s) 763
TspDTI ATGAA 4 cut(s) 597, 702, 975, 984
TspRI CASTG 1 cut(s) 266
XagI CCTNNNNNAGG 1 cut(s) 623
XcmI CCANNNNNNNNNTGG 1 cut(s) 457
XmnI GAANNNNTTC 1 cut(s) 966
XspI CTAG 4 cut(s) 603, 620, 897, 903
Zsp2I ATGCAT 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.