Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0012075

Physical Location & Seq

Genomic Coordinates Forward (+)

13797165 .. 13798157

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGACCAATATATCCTCAAAGCATTGGAAGATGAATTGTTATGGTATGACGAGAGGCCTCCAGTAGTGCTGAATCAAAGCGCTTTTGTGCCGTACACAAATACACCCGTCATTGATAAGCTTCCCAATGATGTCACAAAATCCATGAATACGAACAAGAGGATGCTGCAATTCTTGAGGAAAAGCTGGCAACCTGCAACGGCAAGAAATGAAGCCGAACAGGACGGCAGACAACGGGGTTTTCGCCGCATGATCAACGAGCGCATGAGAAGGGAGAAGCACAAGCAGAGCTACTTAGCCTTGCATTCTTTACTGCCCAAGGGAACCAGGAGTGATAAGAATTGGATTGTGCAAATGACTGCTACGAACATTCAGCGGCTGGAGAGGTACAAGGAGGAATTGATCAAGAGGAACGTGGAGCTGGAAGAACTTTTGGTAGAAAATGAAAAGGAAAGAGTGAAATGGAGCAAGATTAGATTAAAGGTGGCTAATCCTACATCAGGAATTGATTCTATGTTGGAGGTTCTTAAGTGCTTGCAATATTTGGGTTTGAAAGCCAGAAATGTTCACTCTAATTTCTCTCCTGAGGAGTTTTCAGCAGAACTGGAAATTGAAACCAAGGTATGCATGCACATAATTTTGAAGTTATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

218

Amino Acids

25.66

Weight (kDa)

9.35

Isoelectric Point (pI)

54.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43650 AT5G43650
fragaria_vesca	FvH4_4g02610 FvH4_4g02610
malus_domestica	MD13G1206900.v1.1 MD16G1208400.v1.1
prunus_persica	Prupe.1G030500_v2.0.a1
pyrus_communis	pycom13g17920 pycom16g17560
rosa_chinensis	RchiOBHm_Chr4g0390311
rosa_laevigata	RLG00000009925
rosa_multiflora	Rmu_sc0010889.1_g000004
rosa_roxburghii	Rroxscaffold_5G00336420
rosa_rugosa	Rorug03G0330100
rosa_samantha	Rh4AG031600 Rh4BG025600 Rh4CG034700 Rh4DG026700
rosa_wichuraiana	Rw4G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	202
AciI	CCGC	2 cut(s)	247, 376
AfaI	GTAC	2 cut(s)	95, 389
AfeI	AGCGCT	1 cut(s)	82
AfiI	CCNNNNNNNGG	1 cut(s)	500
AflII	CTTAAG	1 cut(s)	527
AgsI	TTSAA	3 cut(s)	553, 614, 643
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	4 cut(s)	121, 186, 291, 421
AluI	AGCT	4 cut(s)	121, 186, 291, 421
AlwNI	CAGNNNCTG	1 cut(s)	379
Aor51HI	AGCGCT	1 cut(s)	82
AoxI	GGCC	1 cut(s)	56
ApeKI	GCWGC	1 cut(s)	166
Asp700I	GAANNNNTTC	1 cut(s)	508
AspLEI	GCGC	2 cut(s)	83, 264
AspS9I	GGNCC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	4
AxyI	CCTNAGG	1 cut(s)	585
BbvI	GCAGC	1 cut(s)	153
BceAI	ACGGC	3 cut(s)	76, 216, 241
BciT130I	CCWGG	1 cut(s)	328
BclI	TGATCA	2 cut(s)	252, 402
BfoI	RGCGCY	1 cut(s)	84
BfrI	CTTAAG	1 cut(s)	527
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	3 cut(s)	167, 247, 377
BlsI	GCNGC	3 cut(s)	168, 248, 378
Bme1390I	CCNGG	1 cut(s)	328
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	325
BmrFI	CCNGG	1 cut(s)	328
BmsI	GCATC	1 cut(s)	153
BpmI	CTGGAG	2 cut(s)	45, 401
BpuEI	CTTGAG	1 cut(s)	196
BsaJI	CCNNGG	2 cut(s)	318, 618
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse1I	ACTGG	2 cut(s)	62, 609
Bse21I	CCTNAGG	1 cut(s)	585
BseBI	CCWGG	1 cut(s)	328
BseDI	CCNNGG	2 cut(s)	318, 618
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMII	CTCAG	1 cut(s)	576
BseNI	ACTGG	2 cut(s)	62, 609
BseRI	GAGGAG	1 cut(s)	602
BseXI	GCAGC	1 cut(s)	153
BshFI	GGCC	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	58
Bsp143I	GATC	2 cut(s)	252, 402
BspACI	CCGC	2 cut(s)	247, 376
BspANI	GGCC	1 cut(s)	58
BspCNI	CTCAG	1 cut(s)	577
BspLI	GGNNCC	1 cut(s)	325
BspMI	ACCTGC	1 cut(s)	202
BspTI	CTTAAG	1 cut(s)	527
BsrI	ACTGG	2 cut(s)	62, 609
BssECI	CCNNGG	2 cut(s)	318, 618
BssMI	GATC	2 cut(s)	252, 402
BssT1I	CCWWGG	2 cut(s)	318, 618
Bst2UI	CCWGG	1 cut(s)	328
BstAFI	CTTAAG	1 cut(s)	527
BstC8I	GCNNGC	3 cut(s)	188, 536, 629
BstDEI	CTNAG	2 cut(s)	295, 585
BstENI	CCTNNNNNAGG	1 cut(s)	498
BstF5I	GGATG	1 cut(s)	168
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	2 cut(s)	83, 264
BstKTI	GATC	2 cut(s)	255, 405
BstMBI	GATC	2 cut(s)	252, 402
BstNI	CCWGG	1 cut(s)	328
BstNSI	RCATGY	1 cut(s)	631
BstSCI	CCNGG	1 cut(s)	326
BstV1I	GCAGC	1 cut(s)	153
Bsu36I	CCTNAGG	1 cut(s)	585
BsuRI	GGCC	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	168
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	3 cut(s)	188, 536, 629
CaiI	CAGNNNCTG	1 cut(s)	379
CfoI	GCGC	2 cut(s)	83, 264
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	2 cut(s)	94, 388
CviAII	CATG	4 cut(s)	145, 250, 265, 628
CviQI	GTAC	2 cut(s)	94, 388
DdeI	CTNAG	2 cut(s)	295, 585
DpnI	GATC	2 cut(s)	254, 404
DpnII	GATC	2 cut(s)	252, 402
Eco130I	CCWWGG	2 cut(s)	318, 618
Eco147I	AGGCCT	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	4
Eco47III	AGCGCT	1 cut(s)	82
Eco81I	CCTNAGG	1 cut(s)	585
EcoNI	CCTNNNNNAGG	1 cut(s)	498
EcoRII	CCWGG	1 cut(s)	326
EcoT14I	CCWWGG	2 cut(s)	318, 618
EcoT22I	ATGCAT	1 cut(s)	629
ErhI	CCWWGG	2 cut(s)	318, 618
FaeI	CATG	4 cut(s)	148, 253, 268, 631
FatI	CATG	4 cut(s)	144, 249, 264, 627
FbaI	TGATCA	2 cut(s)	252, 402
Fnu4HI	GCNGC	3 cut(s)	167, 247, 377
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	3 cut(s)	167, 247, 377
GlaI	GCGC	2 cut(s)	82, 263
GluI	GCNGC	3 cut(s)	167, 247, 377
GsuI	CTGGAG	2 cut(s)	45, 401
HaeII	RGCGCY	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	58
HhaI	GCGC	2 cut(s)	83, 264
Hin1II	CATG	4 cut(s)	148, 253, 268, 631
Hin6I	GCGC	2 cut(s)	81, 262
HinP1I	GCGC	2 cut(s)	81, 262
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	2 cut(s)	73, 509
Hpy166II	GTNNAC	2 cut(s)	96, 568
Hpy188III	TCNNGA	4 cut(s)	175, 406, 501, 584
Hpy8I	GTNNAC	2 cut(s)	96, 568
HpyAV	CCTTC	1 cut(s)	264
HpyCH4IV	ACGT	1 cut(s)	414
HpyCH4V	TGCA	7 cut(s)	169, 197, 304, 352, 538, 627, 631
HpyF3I	CTNAG	2 cut(s)	295, 585
HpySE526I	ACGT	1 cut(s)	414
Hsp92II	CATG	4 cut(s)	148, 253, 268, 631
HspAI	GCGC	2 cut(s)	81, 262
Ksp22I	TGATCA	2 cut(s)	252, 402
Kzo9I	GATC	2 cut(s)	252, 402
LmnI	GCTCC	2 cut(s)	418, 465
Lsp1109I	GCAGC	1 cut(s)	153
LweI	GCATC	1 cut(s)	153
MaeII	ACGT	1 cut(s)	414
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	2 cut(s)	254, 404
MboI	GATC	2 cut(s)	252, 402
MboII	GAAGA	2 cut(s)	41, 437
MluCI	AATT	8 cut(s)	35, 170, 340, 398, 504, 574, 609, 636
MmeI	TCCRAC	1 cut(s)	498
Mph1103I	ATGCAT	1 cut(s)	629
MroXI	GAANNNNTTC	1 cut(s)	508
MseI	TTAA	2 cut(s)	479, 528
MspA1I	CMGCKG	1 cut(s)	376
MspCI	CTTAAG	1 cut(s)	527
MspR9I	CCNGG	1 cut(s)	328
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	1 cut(s)	328
NdeII	GATC	2 cut(s)	252, 402
NlaIII	CATG	4 cut(s)	148, 253, 268, 631
NlaIV	GGNNCC	1 cut(s)	325
NmuCI	GTSAC	1 cut(s)	133
NsiI	ATGCAT	1 cut(s)	629
NspI	RCATGY	1 cut(s)	631
PaeI	GCATGC	1 cut(s)	631
PceI	AGGCCT	1 cut(s)	58
PctI	GAATGC	1 cut(s)	304
PdmI	GAANNNNTTC	1 cut(s)	508
PfeI	GAWTC	2 cut(s)	73, 509
PkrI	GCNGC	3 cut(s)	168, 248, 378
Psp6I	CCWGG	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	326
PspN4I	GGNNCC	1 cut(s)	325
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	1 cut(s)	379
RsaI	GTAC	2 cut(s)	95, 389
RsaNI	GTAC	2 cut(s)	94, 388
SaqAI	TTAA	2 cut(s)	479, 528
SatI	GCNGC	3 cut(s)	167, 247, 377
Sau3AI	GATC	2 cut(s)	252, 402
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	328
SfaNI	GCATC	1 cut(s)	153
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	2 cut(s)	175, 527
SmoI	CTYRAG	2 cut(s)	175, 527
SphI	GCATGC	1 cut(s)	631
Sse9I	AATT	8 cut(s)	35, 170, 340, 398, 504, 574, 609, 636
SseBI	AGGCCT	1 cut(s)	58
SsiI	CCGC	2 cut(s)	247, 376
SspI	AATATT	1 cut(s)	542
StuI	AGGCCT	1 cut(s)	58
StyD4I	CCNGG	1 cut(s)	326
StyI	CCWWGG	2 cut(s)	318, 618
TaiI	ACGT	1 cut(s)	417
TasI	AATT	8 cut(s)	35, 170, 340, 398, 504, 574, 609, 636
TauI	GCSGC	2 cut(s)	249, 379
TfiI	GAWTC	2 cut(s)	73, 509
Tru1I	TTAA	2 cut(s)	479, 528
Tru9I	TTAA	2 cut(s)	479, 528
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	4 cut(s)	48, 161, 225, 459
Vha464I	CTTAAG	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	4
XagI	CCTNNNNNAGG	1 cut(s)	498
XceI	RCATGY	1 cut(s)	631
XmnI	GAANNNNTTC	1 cut(s)	508
Zsp2I	ATGCAT	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.