Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0007237

Physical Location & Seq

Genomic Coordinates Reverse (-)

15725947 .. 15727339

Gene Structure 1393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGGTCTTCTTTCAAAACCTGTTTCCAATCTCTCCCTCTATCTGCTTCTGTTCTTCCTCTTCAGTTTTGAGCTCATCCCGGCTGCTGAATCTGCCACTGACATCACCTCCTTGGTCTACAAGGGCTGTGCAAAGCAGACATTTTCAGATCGATCAGGGGTCTACTCCCAAGCCCTCTCAGCCCTCTTTGGGTCCCTGGTGCAGCAGTCCTCCAAGGCCAAGTTCTTCAAGACCAACACAGGCAGTGGCCAAACCACCATCTCAGGGCTCTTCCAATGCAGAGGTGACCTCAGCAACTCTGACTGCTACACCTGCGTGAGCAAATTGCCCCAGATGTCTGACAACCTCTGTGGGAAAACCATTGCTGCTAGGGTTCAGCTCATTGGATGCTACATGCTCTATGAAATCTCTGGTTTTGCACAAATTTCAGGCATGGAAATGCTGTACAAAACCTGTGGGGGCACAAATGTCGCAGGGTCGGGGTTTGACGAAAGGAGGGACACTGCCTTCAGTGTTTTGGAGAATGGGGTTGTGAGTGGCCATGGATTTTACACCACAAACTATCAGCAGGTTTATGTTTTGGGGCAGTGCCAGGGCGATGTGGGGGACTCAGATTGCGGGGAGTGTATGAAGAGTGGGGTGCAGAGAGCTCAGGTTGAATGTGGGAGTGCAATTTCTGGCCAAATCTATCTACACAAGTGCTTTCTTAGCTATAGTTATTATCCTAATGGGGTTCCCAGGAGATCATCCTCTTCTTCCGCATCATCCTCCTCATCTTCGTCAGGGTCAGGGAATACAGGGAAGACAGTGGCTATAATTTTAGGAGGAGCAGCAGGAGTTGGATTTCTAGTCATATTTTTGTTGTTTGCCAGAAATTTGTTGAAGAAGCATGATGGTATATTACTGATAGAGAGGGACATATGGGTTCTCAGGATTGCAAGCTTGTTTCAAGGTGGAGATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006091 GO:0006810 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009987 GO:0010496 GO:0010497 GO:0010598 GO:0015979 GO:0016020 GO:0016032 GO:0019684 GO:0022900 GO:0030054 GO:0032991 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044237 GO:0044403 GO:0044419 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0055044 GO:0055114 GO:0098796 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

322

Amino Acids

34.27

Weight (kDa)

8.2

Isoelectric Point (pI)

33.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	43 - 135	6.7e-15	Salt stress response/antifungal
Stress-antifung	PF01657	154 - 240	1.8e-11	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04520
fragaria_vesca	FvH4_4g04620 FvH4_4g04620 FvH4_4g04620
malus_domestica	MD13G1221600.v1.1 MD16G1226300.v1.1
prunus_persica	Prupe.1G048300_v2.0.a1
pyrus_communis	pycom13g19590 pycom16g18940
rosa_chinensis	RchiOBHm_Chr4g0395391
rosa_laevigata	RLG00000009626
rosa_multiflora	Rmu_co8264217.1_g000001 Rmu_sc0002791.1_g000014 Rmu_sc0010817.1_g000018
rosa_roxburghii	Rroxscaffold_5G00340350
rosa_rugosa	Rorug03G0357700 Rorug03G0357800 Rorug03G0357900
rosa_samantha	Rh4AG059500 Rh4BG058000 Rh4CG063500 Rh4DG054600
rosa_wichuraiana	Rw0G003290 Rw0G007670 Rw4G004750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	320
Acc36I	ACCTGC	2 cut(s)	320, 559
AccI	GTMKAC	2 cut(s)	117, 162
AciI	CCGC	2 cut(s)	618, 759
AcoI	YGGCCR	3 cut(s)	247, 538, 679
AcsI	RAATTY	2 cut(s)	423, 874
AcuI	CTGAAG	2 cut(s)	46, 493
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	2 cut(s)	189, 264
AgsI	TTSAA	5 cut(s)	15, 229, 659, 883, 950
AjnI	CCWGG	3 cut(s)	195, 591, 737
AjuI	GAANNNNNNNTTGG	2 cut(s)	206, 238
AleI	CACNNNNGTG	1 cut(s)	314
AluBI	AGCT	5 cut(s)	73, 379, 650, 711, 942
AluI	AGCT	5 cut(s)	73, 379, 650, 711, 942
Alw21I	GWGCWC	2 cut(s)	75, 652
AoxI	GGCC	4 cut(s)	216, 247, 538, 679
ApeKI	GCWGC	4 cut(s)	83, 202, 365, 830
ApoI	RAATTY	2 cut(s)	423, 874
AspS9I	GGNCC	1 cut(s)	192
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	2 cut(s)	97, 296
AvaII	GGWCC	1 cut(s)	192
BaeGI	GKGCMC	1 cut(s)	464
BalI	TGGCCA	3 cut(s)	249, 540, 681
BanII	GRGCYC	3 cut(s)	75, 270, 652
BbsI	GAAGAC	1 cut(s)	809
Bbv12I	GWGCWC	2 cut(s)	75, 652
BbvCI	CCTCAGC	1 cut(s)	290
BbvI	GCAGC	4 cut(s)	70, 214, 352, 842
BccI	CCATC	2 cut(s)	266, 887
BcgI	CGANNNNNNTGC	2 cut(s)	451, 485
BciT130I	CCWGG	3 cut(s)	197, 593, 739
BcnI	CCSGG	1 cut(s)	80
BfaI	CTAG	2 cut(s)	369, 848
BfmI	CTRYAG	1 cut(s)	712
BfuAI	ACCTGC	2 cut(s)	320, 559
BisI	GCNGC	4 cut(s)	84, 203, 366, 831
BlsI	GCNGC	4 cut(s)	85, 204, 367, 832
Bme1390I	CCNGG	4 cut(s)	80, 197, 593, 739
Bme18I	GGWCC	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	3 cut(s)	193, 194, 735
BmrFI	CCNGG	4 cut(s)	80, 197, 593, 739
BmsI	GCATC	2 cut(s)	377, 770
BpiI	GAAGAC	1 cut(s)	809
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
Bpu10I	CCTNAGC	2 cut(s)	290, 651
BpuMI	CCSGG	1 cut(s)	80
Bsa29I	ATCGAT	1 cut(s)	151
BsaJI	CCNNGG	6 cut(s)	111, 195, 213, 541, 592, 737
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	2 cut(s)	189, 264
Bse3DI	GCAATG	1 cut(s)	360
BseBI	CCWGG	3 cut(s)	197, 593, 739
BseCI	ATCGAT	1 cut(s)	151
BseDI	CCNNGG	6 cut(s)	111, 195, 213, 541, 592, 737
BseGI	GGATG	4 cut(s)	75, 392, 746, 764
BseLI	CCNNNNNNNGG	2 cut(s)	189, 264
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	6 cut(s)	192, 276, 304, 624, 665, 943
BseRI	GAGGAG	2 cut(s)	760, 840
BseSI	GKGCMC	1 cut(s)	464
BseXI	GCAGC	4 cut(s)	70, 214, 352, 842
BsgI	GTGCAG	2 cut(s)	221, 662
BshFI	GGCC	4 cut(s)	218, 249, 540, 681
BshVI	ATCGAT	1 cut(s)	151
BsiHKAI	GWGCWC	2 cut(s)	75, 652
BsiSI	CCGG	1 cut(s)	80
BslFI	GGGAC	4 cut(s)	178, 512, 620, 929
BslI	CCNNNNNNNGG	2 cut(s)	189, 264
BsmFI	GGGAC	4 cut(s)	178, 512, 620, 929
BsnI	GGCC	4 cut(s)	218, 249, 540, 681
Bsp1286I	GDGCHC	4 cut(s)	75, 270, 464, 652
Bsp1407I	TGTACA	1 cut(s)	444
Bsp143I	GATC	3 cut(s)	148, 152, 743
Bsp19I	CCATGG	1 cut(s)	541
BspACI	CCGC	2 cut(s)	618, 759
BspANI	GGCC	4 cut(s)	218, 249, 540, 681
BspCNI	CTCAG	6 cut(s)	191, 275, 303, 623, 664, 942
BspDI	ATCGAT	1 cut(s)	151
BspLI	GGNNCC	3 cut(s)	193, 194, 735
BspMI	ACCTGC	2 cut(s)	320, 559
BspQI	GCTCTTC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	360
BsrGI	TGTACA	1 cut(s)	444
BssECI	CCNNGG	6 cut(s)	111, 195, 213, 541, 592, 737
BssMI	GATC	3 cut(s)	148, 152, 743
BssT1I	CCWWGG	3 cut(s)	111, 213, 541
Bst2UI	CCWGG	3 cut(s)	197, 593, 739
Bst4CI	ACNGT	1 cut(s)	808
Bst6I	CTCTTC	4 cut(s)	65, 275, 626, 757
BstAUI	TGTACA	1 cut(s)	444
BstC8I	GCNNGC	1 cut(s)	940
BstDEI	CTNAG	7 cut(s)	178, 262, 290, 610, 651, 707, 929
BstDSI	CCRYGG	1 cut(s)	541
BstEII	GGTNACC	1 cut(s)	284
BstF5I	GGATG	4 cut(s)	75, 392, 746, 764
BstKTI	GATC	3 cut(s)	151, 155, 746
BstMBI	GATC	3 cut(s)	148, 152, 743
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 179, 312, 708
BstNI	CCWGG	3 cut(s)	197, 593, 739
BstNSI	RCATGY	1 cut(s)	397
BstPI	GGTNACC	1 cut(s)	284
BstSCI	CCNGG	4 cut(s)	78, 195, 591, 737
BstSFI	CTRYAG	1 cut(s)	712
BstSLI	GKGCMC	1 cut(s)	464
BstV1I	GCAGC	4 cut(s)	70, 214, 352, 842
BstV2I	GAAGAC	1 cut(s)	809
Bsu15I	ATCGAT	1 cut(s)	151
BsuRI	GGCC	4 cut(s)	218, 249, 540, 681
BsuTUI	ATCGAT	1 cut(s)	151
BtgI	CCRYGG	1 cut(s)	541
BtgZI	GCGATG	1 cut(s)	612
BtsCI	GGATG	4 cut(s)	75, 392, 746, 764
BtsI	GCAGTG	3 cut(s)	250, 501, 593
BtsIMutI	CAGTG	6 cut(s)	96, 250, 501, 517, 593, 813
BveI	ACCTGC	2 cut(s)	320, 559
Cac8I	GCNNGC	1 cut(s)	940
Cfr13I	GGNCC	1 cut(s)	192
ClaI	ATCGAT	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	445
CspCI	CAANNNNNGTGG	4 cut(s)	331, 366, 436, 471
CviAII	CATG	4 cut(s)	394, 433, 542, 890
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	7 cut(s)	178, 262, 290, 610, 651, 707, 929
DpnI	GATC	3 cut(s)	150, 154, 745
DpnII	GATC	3 cut(s)	148, 152, 743
EaeI	YGGCCR	3 cut(s)	247, 538, 679
Eam1104I	CTCTTC	4 cut(s)	65, 275, 626, 757
EarI	CTCTTC	4 cut(s)	65, 275, 626, 757
Ecl136II	GAGCTC	2 cut(s)	73, 650
Eco130I	CCWWGG	3 cut(s)	111, 213, 541
Eco24I	GRGCYC	3 cut(s)	75, 270, 652
Eco47I	GGWCC	1 cut(s)	192
Eco53kI	GAGCTC	2 cut(s)	73, 650
Eco57I	CTGAAG	2 cut(s)	46, 493
Eco91I	GGTNACC	1 cut(s)	284
EcoICRI	GAGCTC	2 cut(s)	73, 650
EcoO109I	RGGNCCY	1 cut(s)	192
EcoO65I	GGTNACC	1 cut(s)	284
EcoRII	CCWGG	3 cut(s)	195, 591, 737
EcoT14I	CCWWGG	3 cut(s)	111, 213, 541
EcoT38I	GRGCYC	3 cut(s)	75, 270, 652
ErhI	CCWWGG	3 cut(s)	111, 213, 541
FaeI	CATG	4 cut(s)	397, 436, 545, 893
FaqI	GGGAC	4 cut(s)	178, 512, 620, 929
FatI	CATG	4 cut(s)	393, 432, 541, 889
FauI	CCCGC	1 cut(s)	611
FauNDI	CATATG	1 cut(s)	920
FblI	GTMKAC	2 cut(s)	117, 162
Fnu4HI	GCNGC	4 cut(s)	84, 203, 366, 831
FokI	GGATG	4 cut(s)	62, 399, 733, 751
FriOI	GRGCYC	3 cut(s)	75, 270, 652
Fsp4HI	GCNGC	4 cut(s)	84, 203, 366, 831
FspBI	CTAG	2 cut(s)	369, 848
GluI	GCNGC	4 cut(s)	84, 203, 366, 831
HaeIII	GGCC	4 cut(s)	218, 249, 540, 681
HapII	CCGG	1 cut(s)	80
Hin1II	CATG	4 cut(s)	397, 436, 545, 893
HindIII	AAGCTT	1 cut(s)	940
HinfI	GANTC	2 cut(s)	89, 608
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	2 cut(s)	97, 296
Hpy166II	GTNNAC	2 cut(s)	118, 163
Hpy188I	TCNGA	4 cut(s)	148, 301, 340, 613
Hpy188III	TCNNGA	2 cut(s)	229, 931
Hpy8I	GTNNAC	2 cut(s)	118, 163
HpyAV	CCTTC	1 cut(s)	517
HpyCH4III	ACNGT	1 cut(s)	808
HpyCH4V	TGCA	7 cut(s)	131, 202, 279, 419, 643, 671, 938
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 179, 312, 708
HpyF3I	CTNAG	7 cut(s)	178, 262, 290, 610, 651, 707, 929
Hsp92II	CATG	4 cut(s)	397, 436, 545, 893
KflI	GGGWCCC	1 cut(s)	192
Kzo9I	GATC	3 cut(s)	148, 152, 743
LguI	GCTCTTC	1 cut(s)	275
LmnI	GCTCC	1 cut(s)	827
Lsp1109I	GCAGC	4 cut(s)	70, 214, 352, 842
LweI	GCATC	2 cut(s)	377, 770
MaeI	CTAG	2 cut(s)	369, 848
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	3 cut(s)	150, 154, 745
MboI	GATC	3 cut(s)	148, 152, 743
MhlI	GDGCHC	4 cut(s)	75, 270, 464, 652
MlsI	TGGCCA	3 cut(s)	249, 540, 681
MluCI	AATT	5 cut(s)	323, 423, 672, 816, 874
MluNI	TGGCCA	3 cut(s)	249, 540, 681
MlyI	GAGTC	1 cut(s)	602
MmeI	TCCRAC	1 cut(s)	820
Mox20I	TGGCCA	3 cut(s)	249, 540, 681
MscI	TGGCCA	3 cut(s)	249, 540, 681
MslI	CAYNNNNRTG	2 cut(s)	314, 437
Msp20I	TGGCCA	3 cut(s)	249, 540, 681
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	4 cut(s)	80, 197, 593, 739
MvaI	CCWGG	3 cut(s)	197, 593, 739
MwoI	GCNNNNNNNGC	4 cut(s)	92, 179, 312, 708
NciI	CCSGG	1 cut(s)	80
NcoI	CCATGG	1 cut(s)	541
NdeI	CATATG	1 cut(s)	920
NdeII	GATC	3 cut(s)	148, 152, 743
NlaIII	CATG	4 cut(s)	397, 436, 545, 893
NlaIV	GGNNCC	3 cut(s)	193, 194, 735
NmuCI	GTSAC	1 cut(s)	284
NspI	RCATGY	1 cut(s)	397
OliI	CACNNNNGTG	1 cut(s)	314
PaqCI	CACCTGC	1 cut(s)	320
PciSI	GCTCTTC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	4 cut(s)	85, 204, 367, 832
PleI	GAGTC	1 cut(s)	602
PpsI	GAGTC	1 cut(s)	602
PpuMI	RGGWCCY	1 cut(s)	192
Psp124BI	GAGCTC	2 cut(s)	75, 652
Psp5II	RGGWCCY	1 cut(s)	192
Psp6I	CCWGG	3 cut(s)	195, 591, 737
PspEI	GGTNACC	1 cut(s)	284
PspGI	CCWGG	3 cut(s)	195, 591, 737
PspN4I	GGNNCC	3 cut(s)	193, 194, 735
PspPI	GGNCC	1 cut(s)	192
PspPPI	RGGWCCY	1 cut(s)	192
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
RseI	CAYNNNNRTG	2 cut(s)	314, 437
SacI	GAGCTC	2 cut(s)	75, 652
SapI	GCTCTTC	1 cut(s)	275
SatI	GCNGC	4 cut(s)	84, 203, 366, 831
Sau3AI	GATC	3 cut(s)	148, 152, 743
Sau96I	GGNCC	1 cut(s)	192
SchI	GAGTC	1 cut(s)	602
ScrFI	CCNGG	4 cut(s)	80, 197, 593, 739
SduI	GDGCHC	4 cut(s)	75, 270, 464, 652
SfaNI	GCATC	2 cut(s)	377, 770
SfcI	CTRYAG	1 cut(s)	712
SinI	GGWCC	1 cut(s)	192
SmiMI	CAYNNNNRTG	2 cut(s)	314, 437
Sse9I	AATT	5 cut(s)	323, 423, 672, 816, 874
SsiI	CCGC	2 cut(s)	618, 759
SspMI	CTAG	2 cut(s)	369, 848
SstI	GAGCTC	2 cut(s)	75, 652
StyD4I	CCNGG	4 cut(s)	78, 195, 591, 737
StyI	CCWWGG	3 cut(s)	111, 213, 541
TaaI	ACNGT	1 cut(s)	808
TaqI	TCGA	1 cut(s)	151
TasI	AATT	5 cut(s)	323, 423, 672, 816, 874
TatI	WGTACW	1 cut(s)	444
TfiI	GAWTC	1 cut(s)	89
TscAI	CASTG	6 cut(s)	103, 250, 508, 517, 593, 813
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	4 cut(s)	83, 202, 365, 830
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	2 cut(s)	417, 644
TspRI	CASTG	6 cut(s)	103, 250, 508, 517, 593, 813
VpaK11BI	GGWCC	1 cut(s)	192
XapI	RAATTY	2 cut(s)	423, 874
XceI	RCATGY	1 cut(s)	397
XmiI	GTMKAC	2 cut(s)	117, 162
XspI	CTAG	2 cut(s)	369, 848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.