pycom16g20030

Arginine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0015592
Physical Location & Seq
Forward (+)
17547344 .. 17550327
2984 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1686 bp
ATGTTGTGTCTCTGCCCACGGAGTTGTTTTCATTTGGGTCTTGGAAATAACTGGAATTTCAGGACTTGTGCAAGGCCAACCGCTTGTCTTTCCCAGTCCCAGGAAAGTGGGAATCTAGAGCCAATCAAGAAGCAAGATAAAATTAGTGGGATTGGAAAAACCAGGTCTGCCACGAAGGATCAGGTCGTCATTTCCAACTCTCAGGTTTCTCAGCAGGAGAGCTCCCCTCCACTGATTACTGCATTGAAGGCTTCAGCTGAACAAAGTGCTGCTACATTTCACTTCCCTGGGCACAACAGAGGTCGAGCTGCACCATCTTCTTTAACTAAGCTTATTGGCTTAAAACCATTTGTTCATGATTTGCCTGAGCTTCCTCATCTTGACGACCTCTTTTCCCCGAAAGGGCCCATTTTAGAAGCACAGCAACAGGCAGCCAGTCTCTTTGGGTCAACCGAGACATGGTTCCTTGTAGGAGGAACCACTTGTGGAATTCAGGCAGCAATTATGGCTACATGTTCCCCTGGAGATATTTTAATTCTCCCTCGCAATTCGCATATATCAGCCATATCTGCTATGATATTGTCCGGTGCAGTACCTAAGTACATCATCCCGCATTATAATTTTCACTGGGACATTGCTGGTGGGGTCACTCCATCACAGGTAGAGGCTGCAATCAAGGAAGTGGAGAAAGAAGGCCGAAAAGCAGCTGCAGTTTTGGTCACTTCCCCCACTTATCATGGTATATGCAGCAACGTGAGGGAGATAACCCAGTTGTGCCATTCTCATGGAATTCCTGTGATTGTTGATGAGGCTCATGGTGCACATCTAGGATTTCATCCCGAGATGCCATATTCGGCCATGCAGCAAGGTGCTGACCTAGCCGTGCAATCCACTCACAAGGTTCTCTGCTCTCTCACACAATCATCGATGTTGCATATGTCTGGGAGTATTGTAGATAGAGAAAGAATTTCAAGATGTCTTCAAACACTTCAAAGTAGTAGTCCTAGCTATCTGCTTCTGGCATCATTAGATGCTGCTAGAGCTCAAATTAGTGAAAATCCAGAAAATATTTTTGATAAAGCATTACAGTTGTCCATTGAAGTGAAGAATAAGATAAGAAAGATTTCAGGTATTTCAGTTCTCGACCATCAAGGCTTCCCTAATTTCCCTTCAACTGATCCCCTGCGGCTTACCATAGGATTCCAACAGCTTGGCTTGTCCGGTTATGAAGCCGATGAAATCTTGTACAACGATCATGAAATCATTTGTGAACTTGTTGAAACCCAATCCATTACTTTTGCACTTAACCTTGGAACCTGTAGAGAGCATGTCCAGAGGTTATTGTCGGGAATAAAGCACCTGGTGGCCGCTTCTGCATCAACTCAGGCTGTTAAAAGGAAAGTGGAAGGAGTTGGTGAGTCTGCAATCTTTGCAGAAATTGAAACAAGCTTAGTTCCTAGAGATGCCTTTTTTAGTGGTAAAAGAAGAGTGAGGGTTGAAAACAGCCTTGGAGAAATTTGTGGGGAGCTTATATGTCCATATCCGCCTGGGATTCCGGTAATAATCCCCGGGGAGACTATCACAAAGAAAGCTTTGGATTATCTGCGACATGTTAGAAGCAAAGGTGCTGTAATCAGTGGAGCTTCTGATCCCGAACTCGCTTCCATAGTTGTCTGCAGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OKR_DC_1 OKR_DC_1_C

Protein Analysis

562

Amino Acids

60.54

Weight (kDa)

6.87

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OKR_DC_1 PF01276 76 - 380 6.7e-71 Orn/Lys/Arg decarboxylase, major domain
Aminotran_1_2 PF00155 138 - 384 2.9e-11 Aminotransferase class I and II
Beta_elim_lyase PF01212 139 - 303 2.9e-09 Beta-eliminating lyase
Aminotran_5 PF00266 140 - 302 1.1e-06 Aminotransferase class-V
DegT_DnrJ_EryC1 PF01041 159 - 274 6e-07 DegT/DnrJ/EryC1/StrS aminotransferase family
SepSecS PF05889 175 - 302 5e-06 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS
OKR_DC_1_C PF03711 494 - 540 3.3e-09 Orn/Lys/Arg decarboxylase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g06230 FvH4_4g06230 FvH4_4g06230
malus_domestica MD16G1239400.v1.1
prunus_persica Prupe.1G065500_v2.0.a1
pyrus_communis pycom16g20030
rosa_chinensis RchiOBHm_Chr4g0397951
rosa_laevigata RLG00000009394
rosa_multiflora Rmu_sc0000361.1_g000052 Rmu_sc0001074.1_g000007
rosa_roxburghii Rroxscaffold_5G00342850
rosa_rugosa Rorug04G0004800
rosa_samantha Rh4AG081100 Rh4DG074600
rosa_wichuraiana Rw0G020270 Rw4G006760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 618
AciI CCGC 5 cut(s) 81, 611, 1186, 1368, 1544
AclWI GGATC 3 cut(s) 186, 1172, 1643
AcoI YGGCCR 2 cut(s) 855, 1365
AcsI RAATTY 5 cut(s) 55, 489, 789, 966, 1515
AcuI CTGAAG 1 cut(s) 237
AdeI CACNNNGTG 1 cut(s) 1363
AfaI GTAC 3 cut(s) 594, 602, 1247
AfiI CCNNNNNNNGG 3 cut(s) 100, 402, 459
AflIII ACRYGT 2 cut(s) 512, 1609
AgsI TTSAA 9 cut(s) 247, 972, 983, 992, 1100, 1173, 1280, 1442, 1499
AjnI CCWGG 6 cut(s) 99, 161, 286, 520, 1359, 1546
AjuI GAANNNNNNNTTGG 2 cut(s) 1491, 1523
Alw21I GWGCWC 3 cut(s) 224, 823, 1045
Alw26I GTCTC 4 cut(s) 14, 443, 449, 1568
Alw44I GTGCAC 1 cut(s) 819
AlwI GGATC 3 cut(s) 186, 1172, 1643
Ama87I CYCGRG 2 cut(s) 839, 1568
AoxI GGCC 5 cut(s) 74, 404, 694, 855, 1365
ApaI GGGCCC 1 cut(s) 408
ApaLI GTGCAC 1 cut(s) 819
ApoI RAATTY 5 cut(s) 55, 489, 789, 966, 1515
ArsI GACNNNNNNTTYG 2 cut(s) 985, 1017
Asp700I GAANNNNTTC 1 cut(s) 1123
AspS9I GGNCC 2 cut(s) 404, 405
AsuC2I CCSGG 2 cut(s) 1569, 1570
AsuHPI GGTGA 1 cut(s) 1427
AvaI CYCGRG 2 cut(s) 839, 1568
BaeGI GKGCMC 3 cut(s) 294, 408, 823
BanII GRGCYC 3 cut(s) 224, 408, 1045
BbsI GAAGAC 1 cut(s) 971
Bbv12I GWGCWC 3 cut(s) 224, 823, 1045
BccI CCATC 3 cut(s) 322, 661, 1155
BceAI ACGGC 1 cut(s) 866
BciT130I CCWGG 6 cut(s) 101, 163, 288, 522, 1361, 1548
BcnI CCSGG 2 cut(s) 1569, 1570
BcoDI GTCTC 4 cut(s) 14, 443, 449, 1568
BfaI CTAG 6 cut(s) 116, 827, 878, 1005, 1038, 1458
BfmI CTRYAG 3 cut(s) 708, 1318, 1675
Bme1390I CCNGG 8 cut(s) 101, 163, 288, 522, 1361, 1548, 1569, 1570
BmeT110I CYCGRG 2 cut(s) 839, 1568
BmgT120I GGNCC 2 cut(s) 404, 405
BmiI GGNNCC 4 cut(s) 406, 464, 478, 1315
BmrFI CCNGG 8 cut(s) 101, 163, 288, 522, 1361, 1548, 1569, 1570
BmrI ACTGGG 3 cut(s) 88, 637, 763
BmsI GCATC 5 cut(s) 834, 1021, 1031, 1385, 1453
BmuI ACTGGG 3 cut(s) 88, 637, 763
BpiI GAAGAC 1 cut(s) 971
BplI GAGNNNNNCTC 2 cut(s) 211, 243
BpmI CTGGAG 1 cut(s) 543
Bpu10I CCTNAGC 1 cut(s) 366
BpuMI CCSGG 2 cut(s) 1569, 1570
Bsa29I ATCGAT 1 cut(s) 926
BsaWI WCCGGW 3 cut(s) 584, 1220, 1555
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 402, 459
Bse1I ACTGG 5 cut(s) 56, 94, 435, 632, 769
Bse3DI GCAATG 1 cut(s) 633
BseBI CCWGG 6 cut(s) 101, 163, 288, 522, 1361, 1548
BseCI ATCGAT 1 cut(s) 926
BseGI GGATG 2 cut(s) 606, 835
BseLI CCNNNNNNNGG 3 cut(s) 100, 402, 459
BseMI GCAATG 1 cut(s) 633
BseMII CTCAG 4 cut(s) 215, 224, 357, 1397
BseNI ACTGG 5 cut(s) 56, 94, 435, 632, 769
BseSI GKGCMC 3 cut(s) 294, 408, 823
BsgI GTGCAG 2 cut(s) 294, 609
BshFI GGCC 5 cut(s) 76, 406, 696, 857, 1367
BshVI ATCGAT 1 cut(s) 926
BsiHKAI GWGCWC 3 cut(s) 224, 823, 1045
BsiHKCI CYCGRG 2 cut(s) 839, 1568
BsiSI CCGG 4 cut(s) 585, 1221, 1556, 1569
BslFI GGGAC 2 cut(s) 82, 644
BslI CCNNNNNNNGG 3 cut(s) 100, 402, 459
BsmAI GTCTC 4 cut(s) 14, 443, 449, 1568
BsmFI GGGAC 2 cut(s) 82, 644
BsnI GGCC 5 cut(s) 76, 406, 696, 857, 1367
BsoBI CYCGRG 2 cut(s) 839, 1568
Bsp120I GGGCCC 1 cut(s) 404
Bsp1286I GDGCHC 5 cut(s) 224, 294, 408, 823, 1045
Bsp1407I TGTACA 1 cut(s) 1245
Bsp143I GATC 4 cut(s) 178, 1177, 1252, 1648
BspACI CCGC 5 cut(s) 81, 611, 1186, 1368, 1544
BspANI GGCC 5 cut(s) 76, 406, 696, 857, 1367
BspCNI CTCAG 4 cut(s) 214, 223, 358, 1396
BspDI ATCGAT 1 cut(s) 926
BspHI TCATGA 2 cut(s) 355, 1255
BspLI GGNNCC 4 cut(s) 406, 464, 478, 1315
BspMAI CTGCAG 2 cut(s) 712, 1679
BspPI GGATC 3 cut(s) 186, 1172, 1643
BsrDI GCAATG 1 cut(s) 633
BsrGI TGTACA 1 cut(s) 1245
BsrI ACTGG 5 cut(s) 56, 94, 435, 632, 769
BssMI GATC 4 cut(s) 178, 1177, 1252, 1648
BssT1I CCWWGG 2 cut(s) 1309, 1507
Bst2UI CCWGG 6 cut(s) 101, 163, 288, 522, 1361, 1548
Bst4CI ACNGT 1 cut(s) 1089
Bst6I CTCTTC 1 cut(s) 1480
BstAPI GCANNNNNTGC 1 cut(s) 1430
BstAUI TGTACA 1 cut(s) 1245
BstDEI CTNAG 7 cut(s) 201, 210, 327, 366, 597, 1383, 1450
BstDSI CCRYGG 1 cut(s) 17
BstF5I GGATG 2 cut(s) 606, 835
BstKTI GATC 4 cut(s) 181, 1180, 1255, 1651
BstMAI GTCTC 4 cut(s) 14, 443, 449, 1568
BstMBI GATC 4 cut(s) 178, 1177, 1252, 1648
BstMWI GCNNNNNNNGC 8 cut(s) 248, 506, 569, 818, 878, 1040, 1373, 1430
BstNI CCWGG 6 cut(s) 101, 163, 288, 522, 1361, 1548
BstNSI RCATGY 3 cut(s) 516, 1331, 1613
BstSCI CCNGG 8 cut(s) 99, 161, 286, 520, 1359, 1546, 1567, 1568
BstSFI CTRYAG 3 cut(s) 708, 1318, 1675
BstSLI GKGCMC 3 cut(s) 294, 408, 823
BstV2I GAAGAC 1 cut(s) 971
BstXI CCANNNNNNTGG 3 cut(s) 107, 785, 1211
Bsu15I ATCGAT 1 cut(s) 926
BsuRI GGCC 5 cut(s) 76, 406, 696, 857, 1367
BsuTUI ATCGAT 1 cut(s) 926
BtgI CCRYGG 1 cut(s) 17
BtsCI GGATG 2 cut(s) 606, 835
BtsIMutI CAGTG 3 cut(s) 230, 625, 1642
CciI TCATGA 2 cut(s) 355, 1255
Cfr13I GGNCC 2 cut(s) 404, 405
Cfr9I CCCGGG 1 cut(s) 1568
ClaI ATCGAT 1 cut(s) 926
CsiI ACCWGGT 2 cut(s) 161, 1359
Csp6I GTAC 3 cut(s) 593, 601, 1246
CviQI GTAC 3 cut(s) 593, 601, 1246
DdeI CTNAG 7 cut(s) 201, 210, 327, 366, 597, 1383, 1450
DpnI GATC 4 cut(s) 180, 1179, 1254, 1650
DpnII GATC 4 cut(s) 178, 1177, 1252, 1648
DraIII CACNNNGTG 1 cut(s) 1363
EaeI YGGCCR 2 cut(s) 855, 1365
Eam1104I CTCTTC 1 cut(s) 1480
EarI CTCTTC 1 cut(s) 1480
EciI GGCGGA 1 cut(s) 1533
Ecl136II GAGCTC 2 cut(s) 222, 1043
Eco130I CCWWGG 2 cut(s) 1309, 1507
Eco24I GRGCYC 3 cut(s) 224, 408, 1045
Eco53kI GAGCTC 2 cut(s) 222, 1043
Eco57I CTGAAG 1 cut(s) 237
Eco88I CYCGRG 2 cut(s) 839, 1568
EcoICRI GAGCTC 2 cut(s) 222, 1043
EcoO109I RGGNCCY 1 cut(s) 404
EcoRI GAATTC 2 cut(s) 489, 789
EcoRII CCWGG 6 cut(s) 99, 161, 286, 520, 1359, 1546
EcoT14I CCWWGG 2 cut(s) 1309, 1507
EcoT38I GRGCYC 3 cut(s) 224, 408, 1045
ErhI CCWWGG 2 cut(s) 1309, 1507
FaqI GGGAC 2 cut(s) 82, 644
FauI CCCGC 1 cut(s) 618
FauNDI CATATG 1 cut(s) 936
FokI GGATG 2 cut(s) 593, 822
FriOI GRGCYC 3 cut(s) 224, 408, 1045
FspBI CTAG 6 cut(s) 116, 827, 878, 1005, 1038, 1458
GsuI CTGGAG 1 cut(s) 543
HaeIII GGCC 5 cut(s) 76, 406, 696, 857, 1367
HapII CCGG 4 cut(s) 585, 1221, 1556, 1569
HincII GTYRAC 1 cut(s) 450
HindII GTYRAC 1 cut(s) 450
HindIII AAGCTT 3 cut(s) 329, 1447, 1590
HinfI GANTC 4 cut(s) 112, 1200, 1418, 1552
HpaII CCGG 4 cut(s) 585, 1221, 1556, 1569
HphI GGTGA 1 cut(s) 1427
Hpy166II GTNNAC 3 cut(s) 450, 821, 1271
Hpy188I TCNGA 1 cut(s) 1648
Hpy8I GTNNAC 3 cut(s) 450, 821, 1271
HpyAV CCTTC 5 cut(s) 169, 241, 686, 1179, 1400
HpyCH4III ACNGT 1 cut(s) 1089
HpyCH4IV ACGT 1 cut(s) 753
HpyF10VI GCNNNNNNNGC 8 cut(s) 248, 506, 569, 818, 878, 1040, 1373, 1430
HpyF3I CTNAG 7 cut(s) 201, 210, 327, 366, 597, 1383, 1450
HpySE526I ACGT 1 cut(s) 753
Kzo9I GATC 4 cut(s) 178, 1177, 1252, 1648
LmnI GCTCC 3 cut(s) 227, 1525, 1640
LweI GCATC 5 cut(s) 834, 1021, 1031, 1385, 1453
MabI ACCWGGT 2 cut(s) 161, 1359
MaeI CTAG 6 cut(s) 116, 827, 878, 1005, 1038, 1458
MaeII ACGT 1 cut(s) 753
MaeIII GTNAC 2 cut(s) 646, 718
MalI GATC 4 cut(s) 180, 1179, 1254, 1650
MboI GATC 4 cut(s) 178, 1177, 1252, 1648
MboII GAAGA 4 cut(s) 309, 971, 1117, 1497
MhlI GDGCHC 5 cut(s) 224, 294, 408, 823, 1045
MlyI GAGTC 1 cut(s) 1427
MmeI TCCRAC 2 cut(s) 219, 1228
MroXI GAANNNNTTC 1 cut(s) 1123
MseI TTAA 5 cut(s) 323, 341, 533, 1305, 1392
MslI CAYNNNNRTG 2 cut(s) 783, 1100
MspA1I CMGCKG 2 cut(s) 257, 707
MspI CCGG 4 cut(s) 585, 1221, 1556, 1569
MspR9I CCNGG 8 cut(s) 101, 163, 288, 522, 1361, 1548, 1569, 1570
MvaI CCWGG 6 cut(s) 101, 163, 288, 522, 1361, 1548
MwoI GCNNNNNNNGC 8 cut(s) 248, 506, 569, 818, 878, 1040, 1373, 1430
NciI CCSGG 2 cut(s) 1569, 1570
NdeI CATATG 1 cut(s) 936
NdeII GATC 4 cut(s) 178, 1177, 1252, 1648
NlaIV GGNNCC 4 cut(s) 406, 464, 478, 1315
NmuCI GTSAC 2 cut(s) 646, 718
NspI RCATGY 3 cut(s) 516, 1331, 1613
PagI TCATGA 2 cut(s) 355, 1255
PasI CCCWGGG 1 cut(s) 287
PciI ACATGT 2 cut(s) 512, 1609
PdmI GAANNNNTTC 1 cut(s) 1123
PfeI GAWTC 3 cut(s) 112, 1200, 1552
PleI GAGTC 1 cut(s) 1426
PpsI GAGTC 1 cut(s) 1426
PscI ACATGT 2 cut(s) 512, 1609
PsiI TTATAA 1 cut(s) 618
Psp124BI GAGCTC 2 cut(s) 224, 1045
Psp6I CCWGG 6 cut(s) 99, 161, 286, 520, 1359, 1546
PspGI CCWGG 6 cut(s) 99, 161, 286, 520, 1359, 1546
PspN4I GGNNCC 4 cut(s) 406, 464, 478, 1315
PspOMI GGGCCC 1 cut(s) 404
PspPI GGNCC 2 cut(s) 404, 405
PstI CTGCAG 2 cut(s) 712, 1679
PvuII CAGCTG 2 cut(s) 257, 707
RsaI GTAC 3 cut(s) 594, 602, 1247
RsaNI GTAC 3 cut(s) 593, 601, 1246
RseI CAYNNNNRTG 2 cut(s) 783, 1100
SacI GAGCTC 2 cut(s) 224, 1045
SaqAI TTAA 5 cut(s) 323, 341, 533, 1305, 1392
Sau3AI GATC 4 cut(s) 178, 1177, 1252, 1648
Sau96I GGNCC 2 cut(s) 404, 405
SchI GAGTC 1 cut(s) 1427
ScrFI CCNGG 8 cut(s) 101, 163, 288, 522, 1361, 1548, 1569, 1570
SduI GDGCHC 5 cut(s) 224, 294, 408, 823, 1045
SexAI ACCWGGT 2 cut(s) 161, 1359
SfaNI GCATC 5 cut(s) 834, 1021, 1031, 1385, 1453
SfcI CTRYAG 3 cut(s) 708, 1318, 1675
SmaI CCCGGG 1 cut(s) 1570
SmiMI CAYNNNNRTG 2 cut(s) 783, 1100
SsiI CCGC 5 cut(s) 81, 611, 1186, 1368, 1544
SspI AATATT 1 cut(s) 1069
SspMI CTAG 6 cut(s) 116, 827, 878, 1005, 1038, 1458
SstI GAGCTC 2 cut(s) 224, 1045
StyD4I CCNGG 8 cut(s) 99, 161, 286, 520, 1359, 1546, 1567, 1568
StyI CCWWGG 2 cut(s) 1309, 1507
TaaI ACNGT 1 cut(s) 1089
TaiI ACGT 1 cut(s) 756
TaqI TCGA 3 cut(s) 304, 926, 1143
TatI WGTACW 2 cut(s) 600, 1245
TauI GCSGC 2 cut(s) 1189, 1370
TfiI GAWTC 3 cut(s) 112, 1200, 1552
Tru1I TTAA 5 cut(s) 323, 341, 533, 1305, 1392
Tru9I TTAA 5 cut(s) 323, 341, 533, 1305, 1392
TscAI CASTG 3 cut(s) 237, 632, 1642
TseFI GTSAC 2 cut(s) 646, 718
Tsp45I GTSAC 2 cut(s) 646, 718
TspDTI ATGAA 6 cut(s) 20, 344, 824, 1242, 1251, 1272
TspGWI ACGGA 1 cut(s) 34
TspMI CCCGGG 1 cut(s) 1568
TspRI CASTG 3 cut(s) 237, 632, 1642
VneI GTGCAC 1 cut(s) 819
XapI RAATTY 5 cut(s) 55, 489, 789, 966, 1515
XbaI TCTAGA 1 cut(s) 115
XceI RCATGY 3 cut(s) 516, 1331, 1613
XmaI CCCGGG 1 cut(s) 1568
XmnI GAANNNNTTC 1 cut(s) 1123
XspI CTAG 6 cut(s) 116, 827, 878, 1005, 1038, 1458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.