Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0014478

Physical Location & Seq

Genomic Coordinates Forward (+)

23922988 .. 23925900

Gene Structure 2913 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTCATCCACATCTCTGCTACCTATCAATGGAGGCCTCCTCTTCACTCAAAGCTCATCGTTTCCCAATCACCATCGTCCCTCTGCGCCTCTCTACAATTGGGGTTGGAGAAGACACCAAGGTGGAAGTGTAGTTGCTTACAGAACCAATGGCAGTGCTCTTCAATTGTTGGCCAATCCTAATGTTTCTTCAAAGAAAGGAGCATCAAATAATGAAGTGATAATGGTTGATCCTTTGGAAGCCAAGCGGTTGGCTGCCAAGCAAATGGAAGAAATTAAAGCAAAAGAGAAATACAAGAGAAAACGTCAAATTGAAGCAATTAATGGTGCATGGGCAATGATTGGTCTTACAGCAGGCTTGCTAATTGAAGCTCAAACTGGAAAAAGCATTCCGACCCAGTTGGTTGACTACTGGAGTGTCATTGTTGACATTTTCATGCCTGAAACCTTTTCCCTTCAGTTGGTTGGCTACTGGAGGGCTATTGTCGACATGTTCATGCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

168

Amino Acids

18.65

Weight (kDa)

9.82

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28025 AT4G28025
fragaria_vesca	FvH4_4g08570 FvH4_4g08570
malus_domestica	MD16G1263600.v1.1
prunus_persica	Prupe.1G095600_v2.0.a1
pyrus_communis	pycom16g23250
rosa_chinensis	RchiOBHm_Chr4g0404651
rosa_laevigata	RLG00000008916
rosa_multiflora	Rmu_sc0002699.1_g000039
rosa_roxburghii	Rroxscaffold_5G00348800
rosa_rugosa	Rorug04G0048500
rosa_samantha	Rh4AG124200 Rh4BG118300 Rh4CG132300 Rh4DG117300
rosa_wichuraiana	Rw4G010070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	486
AciI	CCGC	1 cut(s)	247
AclWI	GGATC	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	171
AcuI	CTGAAG	1 cut(s)	440
AfiI	CCNNNNNNNGG	2 cut(s)	29, 460
AflIII	ACRYGT	1 cut(s)	489
AgsI	TTSAA	4 cut(s)	164, 192, 314, 368
AleI	CACNNNNGTG	1 cut(s)	120
AluBI	AGCT	2 cut(s)	54, 371
AluI	AGCT	2 cut(s)	54, 371
Alw21I	GWGCWC	1 cut(s)	160
AlwI	GGATC	1 cut(s)	224
AoxI	GGCC	2 cut(s)	34, 171
ApeKI	GCWGC	1 cut(s)	254
AseI	ATTAAT	1 cut(s)	321
AspLEI	GCGC	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	62
BalI	TGGCCA	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	1 cut(s)	81
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
BmrI	ACTGGG	1 cut(s)	391
BmsI	GCATC	1 cut(s)	212
BmuI	ACTGGG	1 cut(s)	391
BpiI	GAAGAC	1 cut(s)	118
BplI	GAGNNNNNCTC	2 cut(s)	24, 56
BpmI	CTGGAG	2 cut(s)	433, 493
BsaJI	CCNNGG	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 460
Bse1I	ACTGG	4 cut(s)	382, 397, 416, 476
Bse3DI	GCAATG	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	2 cut(s)	29, 460
BseMI	GCAATG	1 cut(s)	342
BseNI	ACTGG	4 cut(s)	382, 397, 416, 476
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	241
BshFI	GGCC	2 cut(s)	36, 173
BsiHKAI	GWGCWC	1 cut(s)	160
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	2 cut(s)	29, 460
BsmFI	GGGAC	1 cut(s)	63
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	2 cut(s)	36, 173
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	1 cut(s)	229
BspACI	CCGC	1 cut(s)	247
BspANI	GGCC	2 cut(s)	36, 173
BspPI	GGATC	1 cut(s)	224
BspQI	GCTCTTC	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	4 cut(s)	382, 397, 416, 476
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	1 cut(s)	229
BssT1I	CCWWGG	1 cut(s)	118
Bst6I	CTCTTC	2 cut(s)	47, 165
BstC8I	GCNNGC	2 cut(s)	355, 359
BstF5I	GGATG	1 cut(s)	5
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	229
BstNSI	RCATGY	1 cut(s)	493
BstV1I	GCAGC	1 cut(s)	241
BstV2I	GAAGAC	1 cut(s)	118
BstXI	CCANNNNNNTGG	2 cut(s)	250, 265
BsuRI	GGCC	2 cut(s)	36, 173
BtsCI	GGATG	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	160
Cac8I	GCNNGC	2 cut(s)	355, 359
CfoI	GCGC	1 cut(s)	88
CviAII	CATG	4 cut(s)	330, 436, 490, 496
CviJI	RGCY	9 cut(s)	36, 54, 173, 242, 254, 357, 371, 468, 479
CviKI_1	RGCY	9 cut(s)	36, 54, 173, 242, 254, 357, 371, 468, 479
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
EaeI	YGGCCR	1 cut(s)	171
Eam1104I	CTCTTC	2 cut(s)	47, 165
EarI	CTCTTC	2 cut(s)	47, 165
Eco130I	CCWWGG	1 cut(s)	118
Eco147I	AGGCCT	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	440
EcoT14I	CCWWGG	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	4 cut(s)	333, 439, 493, 499
FaiI	YATR	4 cut(s)	331, 437, 491, 497
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	4 cut(s)	329, 435, 489, 495
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	1 cut(s)	255
Fsp4HI	GCNGC	1 cut(s)	255
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	1 cut(s)	255
GsuI	CTGGAG	2 cut(s)	433, 493
HaeIII	GGCC	2 cut(s)	36, 173
HhaI	GCGC	1 cut(s)	88
Hin1II	CATG	4 cut(s)	333, 439, 493, 499
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HincII	GTYRAC	3 cut(s)	406, 427, 487
HindII	GTYRAC	3 cut(s)	406, 427, 487
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	3 cut(s)	406, 427, 487
Hpy188I	TCNGA	1 cut(s)	393
Hpy8I	GTNNAC	3 cut(s)	406, 427, 487
HpyAV	CCTTC	1 cut(s)	464
HpyCH4IV	ACGT	1 cut(s)	304
HpyCH4V	TGCA	1 cut(s)	329
HpySE526I	ACGT	1 cut(s)	304
Hsp92II	CATG	4 cut(s)	333, 439, 493, 499
HspAI	GCGC	1 cut(s)	86
Kzo9I	GATC	1 cut(s)	229
LguI	GCTCTTC	1 cut(s)	165
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	6 cut(s)	339, 363, 397, 410, 453, 457
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	1 cut(s)	212
MaeII	ACGT	1 cut(s)	304
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	5 cut(s)	34, 123, 152, 180, 281
MfeI	CAATTG	2 cut(s)	97, 164
MhlI	GDGCHC	1 cut(s)	160
MlsI	TGGCCA	1 cut(s)	173
MluCI	AATT	6 cut(s)	97, 164, 273, 309, 318, 363
MluNI	TGGCCA	1 cut(s)	173
MmeI	TCCRAC	2 cut(s)	86, 416
MnlI	CCTC	6 cut(s)	26, 47, 50, 91, 99, 468
Mox20I	TGGCCA	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	173
MseI	TTAA	2 cut(s)	276, 321
MslI	CAYNNNNRTG	3 cut(s)	120, 434, 494
Msp20I	TGGCCA	1 cut(s)	173
MunI	CAATTG	2 cut(s)	97, 164
Mva1269I	GAATGC	1 cut(s)	387
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	4 cut(s)	333, 439, 493, 499
NspI	RCATGY	1 cut(s)	493
OliI	CACNNNNGTG	1 cut(s)	120
PceI	AGGCCT	1 cut(s)	36
PciI	ACATGT	1 cut(s)	489
PciSI	GCTCTTC	1 cut(s)	165
PctI	GAATGC	1 cut(s)	387
PkrI	GCNGC	1 cut(s)	256
PscI	ACATGT	1 cut(s)	489
PshBI	ATTAAT	1 cut(s)	321
RseI	CAYNNNNRTG	3 cut(s)	120, 434, 494
SalI	GTCGAC	1 cut(s)	485
SapI	GCTCTTC	1 cut(s)	165
SaqAI	TTAA	2 cut(s)	276, 321
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	1 cut(s)	229
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	6 cut(s)	25, 56, 124, 307, 373, 449
SfaNI	GCATC	1 cut(s)	212
SmiMI	CAYNNNNRTG	3 cut(s)	120, 434, 494
Sse9I	AATT	6 cut(s)	97, 164, 273, 309, 318, 363
SseBI	AGGCCT	1 cut(s)	36
SsiI	CCGC	1 cut(s)	247
StuI	AGGCCT	1 cut(s)	36
StyI	CCWWGG	1 cut(s)	118
TaiI	ACGT	1 cut(s)	307
TaqI	TCGA	1 cut(s)	486
TasI	AATT	6 cut(s)	97, 164, 273, 309, 318, 363
Tru1I	TTAA	2 cut(s)	276, 321
Tru9I	TTAA	2 cut(s)	276, 321
TscAI	CASTG	1 cut(s)	160
TseI	GCWGC	1 cut(s)	254
TspDTI	ATGAA	3 cut(s)	228, 424, 484
TspRI	CASTG	1 cut(s)	160
VspI	ATTAAT	1 cut(s)	321
XceI	RCATGY	1 cut(s)	493
XmiI	GTMKAC	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.