pycom16g23540
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0014346
Physical Location & Seq
Forward (+)
24624443 .. 24625727
1285 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 915 bp
ATGGGACGAGCTCCATGCTGTGACAAGGCCAACGTCAAGAAGGGACCATGGTCACCTGAAGAGGATGCAAGACTTAAGGCCTATATTGAAGAGCATGGTACTGGTGGCAATTGGATTGCTCTTCCTCAGAAAATTGGGCTCAAAAGATGTGGAAAAAGTTGCAGGCTGAGATGGCTCAACTACTTGAGGCCCAACATCAAGCATGGTGGATTCTCAGAAGAAGAAGACAACACCATCTGCAGCCTCTATATAAGTATTGGCAGCAGGTGGTCTATAATTGCTGCCCAATTGCCTGGAAGAACTGATAATGATATAAAGAACTACTGGAACACCCGATTGAAGAAAAAGTTACTTGGAAGGCGCAAACAGTCCAATATCAATCAATCTCCGTCTGATCAGAGTCAGGATCACCAGCTCAAGGACGCTGGCAAGACACATGCCTTAAGCAGTTCAGCCCTTGAAAGACTTCAACTCCATATGCAGCTTCAAAGCCTTCAGAACCCTTTTTCTTTCTATAATAATCCTGCACTGTGGCCCAAGTTGCACCCTTTGCAAGAAAAGATGATACAGACCCTCCGTTCCATGAATGATAATAACCCTATGATGCACCACCGTGCTCTCACAAGTCCTCTTCAACCAGCTCAAGAGCAGAAGGGTAATATCAATGATGTCCATGAACAATTGCAGCTCACTTCTGCCTCTATCTTAATTCAACAAGAATTTGCAAAATTATGCAATCACAAAAATATGGATGAACCGGAGAATCCTTTGAATGGCATGTCATACTCGGACGCCCCCTGTCGTGCTTTCATCTCCACAAGTAATCAAGTGGACTCAACTATTGTGGCGGCAAAAGCCGATGGTGTAGAGCAGTTAAACAGTGTCGGAACTCATGATCGATCATCACCAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0001704 GO:0001706 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0007369 GO:0007492 GO:0008150 GO:0008285 GO:0009505 GO:0009531 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009790 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022603 GO:0030154 GO:0030312 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0035987 GO:0042127 GO:0042221 GO:0042493 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044426 GO:0044462 GO:0044464 GO:0045595 GO:0045597 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0048226 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048598 GO:0048646 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0065008 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905421 GO:2000026 GO:2000067 GO:2000112 GO:2000113 GO:2000280 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

305

Amino Acids

34.2

Weight (kDa)

9.01

Isoelectric Point (pI)

68.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 62 9.3e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 77 8.1e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 69 - 112 1.1e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 139 8e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014346)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57620
fragaria_vesca FvH4_4g09030
malus_domestica MD13G1266500.v1.1 MD16G1266600.v1.1
prunus_persica Prupe.1G089700_v2.0.a1
pyrus_communis pycom13g22950 pycom16g23540
rosa_chinensis RchiOBHm_Chr4g0403351
rosa_laevigata RLG00000008981
rosa_multiflora Rmu_sc0000381.1_g000013
rosa_roxburghii Rroxscaffold_5G00347990
rosa_rugosa Rorug04G0041600
rosa_samantha Rh4AG118500 Rh4BG111100 Rh4CG125900 Rh4DG111200
rosa_wichuraiana Rw4G009620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 255
Acc36I ACCTGC 1 cut(s) 255
AciI CCGC 1 cut(s) 848
AclWI GGATC 1 cut(s) 414
AcsI RAATTY 1 cut(s) 719
AcuI CTGAAG 2 cut(s) 78, 479
AcyI GRCGYC 1 cut(s) 792
AfaI GTAC 1 cut(s) 100
AfiI CCNNNNNNNGG 2 cut(s) 418, 773
AflII CTTAAG 2 cut(s) 74, 442
AgsI TTSAA 8 cut(s) 89, 340, 461, 470, 488, 635, 713, 772
AjnI CCWGG 2 cut(s) 292, 907
AleI CACNNNNGTG 1 cut(s) 612
AluBI AGCT 5 cut(s) 11, 415, 484, 641, 688
AluI AGCT 5 cut(s) 11, 415, 484, 641, 688
Alw21I GWGCWC 2 cut(s) 13, 619
AlwI GGATC 1 cut(s) 414
AoxI GGCC 4 cut(s) 27, 78, 188, 533
ApeKI GCWGC 5 cut(s) 240, 261, 281, 481, 685
ApoI RAATTY 1 cut(s) 719
Asp700I GAANNNNTTC 1 cut(s) 465
AspLEI GCGC 1 cut(s) 363
AspS9I GGNCC 3 cut(s) 44, 189, 534
AsuHPI GGTGA 3 cut(s) 45, 401, 897
AvaII GGWCC 1 cut(s) 44
BanII GRGCYC 2 cut(s) 13, 141
BbsI GAAGAC 1 cut(s) 231
Bbv12I GWGCWC 2 cut(s) 13, 619
BbvI GCAGC 5 cut(s) 252, 268, 273, 493, 697
BccI CCATC 3 cut(s) 165, 242, 854
BcgI CGANNNNNNTGC 1 cut(s) 31
BciT130I CCWGG 2 cut(s) 294, 909
BclI TGATCA 1 cut(s) 394
BfmI CTRYAG 1 cut(s) 238
BfrI CTTAAG 2 cut(s) 74, 442
BfuAI ACCTGC 1 cut(s) 255
BisI GCNGC 6 cut(s) 241, 262, 282, 482, 686, 849
BlsI GCNGC 6 cut(s) 242, 263, 283, 483, 687, 850
Bme1390I CCNGG 2 cut(s) 294, 909
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 3 cut(s) 44, 189, 534
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 2 cut(s) 294, 909
BmsI GCATC 2 cut(s) 55, 594
BoxI GACNNNNGTC 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 231
BpuEI CTTGAG 3 cut(s) 205, 401, 627
Bsa29I ATCGAT 1 cut(s) 898
BsaHI GRCGYC 1 cut(s) 792
BsaJI CCNNGG 1 cut(s) 47
BsaWI WCCGGW 1 cut(s) 757
BsaXI ACNNNNNCTCC 4 cut(s) 456, 486, 558, 588
Bsc4I CCNNNNNNNGG 2 cut(s) 418, 773
Bse1I ACTGG 2 cut(s) 106, 329
BseBI CCWGG 2 cut(s) 294, 909
BseCI ATCGAT 1 cut(s) 898
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 2 cut(s) 70, 757
BseLI CCNNNNNNNGG 2 cut(s) 418, 773
BseMII CTCAG 3 cut(s) 140, 158, 228
BseNI ACTGG 2 cut(s) 106, 329
BseXI GCAGC 5 cut(s) 252, 268, 273, 493, 697
BsgI GTGCAG 1 cut(s) 510
BshFI GGCC 4 cut(s) 29, 80, 190, 535
BshVI ATCGAT 1 cut(s) 898
BsiHKAI GWGCWC 2 cut(s) 13, 619
BsiSI CCGG 1 cut(s) 758
BslFI GGGAC 2 cut(s) 18, 57
BslI CCNNNNNNNGG 2 cut(s) 418, 773
BsmFI GGGAC 2 cut(s) 18, 57
BsnI GGCC 4 cut(s) 29, 80, 190, 535
Bsp1286I GDGCHC 3 cut(s) 13, 141, 619
Bsp143I GATC 4 cut(s) 394, 406, 895, 899
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 1 cut(s) 848
BspANI GGCC 4 cut(s) 29, 80, 190, 535
BspCNI CTCAG 3 cut(s) 139, 159, 227
BspDI ATCGAT 1 cut(s) 898
BspHI TCATGA 1 cut(s) 892
BspLI GGNNCC 1 cut(s) 45
BspMAI CTGCAG 1 cut(s) 242
BspMI ACCTGC 1 cut(s) 255
BspPI GGATC 1 cut(s) 414
BspQI GCTCTTC 2 cut(s) 84, 126
BspTI CTTAAG 2 cut(s) 74, 442
BsrI ACTGG 2 cut(s) 106, 329
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 4 cut(s) 394, 406, 895, 899
BssNI GRCGYC 1 cut(s) 792
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 2 cut(s) 294, 909
Bst4CI ACNGT 4 cut(s) 369, 531, 614, 881
Bst6I CTCTTC 4 cut(s) 54, 84, 126, 636
BstACI GRCGYC 1 cut(s) 792
BstAFI CTTAAG 2 cut(s) 74, 442
BstAPI GCANNNNNTGC 1 cut(s) 550
BstC8I GCNNGC 2 cut(s) 164, 427
BstDEI CTNAG 3 cut(s) 126, 167, 214
BstDSI CCRYGG 1 cut(s) 47
BstEII GGTNACC 1 cut(s) 51
BstF5I GGATG 2 cut(s) 70, 757
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 4 cut(s) 397, 409, 898, 902
BstMBI GATC 4 cut(s) 394, 406, 895, 899
BstMWI GCNNNNNNNGC 4 cut(s) 172, 541, 550, 854
BstNI CCWGG 2 cut(s) 294, 909
BstNSI RCATGY 2 cut(s) 440, 781
BstPAI GACNNNNGTC 1 cut(s) 49
BstPI GGTNACC 1 cut(s) 51
BstSCI CCNGG 2 cut(s) 292, 907
BstSFI CTRYAG 1 cut(s) 238
BstV1I GCAGC 5 cut(s) 252, 268, 273, 493, 697
BstV2I GAAGAC 1 cut(s) 231
BstXI CCANNNNNNTGG 1 cut(s) 293
Bsu15I ATCGAT 1 cut(s) 898
BsuRI GGCC 4 cut(s) 29, 80, 190, 535
BsuTUI ATCGAT 1 cut(s) 898
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 2 cut(s) 70, 757
BtsIMutI CAGTG 2 cut(s) 527, 886
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 2 cut(s) 164, 427
CciI TCATGA 1 cut(s) 892
CfoI GCGC 1 cut(s) 363
Cfr13I GGNCC 3 cut(s) 44, 189, 534
ClaI ATCGAT 1 cut(s) 898
CseI GACGC 2 cut(s) 431, 800
CsiI ACCWGGT 1 cut(s) 907
Csp6I GTAC 1 cut(s) 99
CspCI CAANNNNNGTGG 6 cut(s) 130, 165, 187, 222, 825, 860
CviAII CATG 9 cut(s) 15, 48, 95, 203, 437, 583, 674, 778, 893
CviQI GTAC 1 cut(s) 99
DdeI CTNAG 3 cut(s) 126, 167, 214
DpnI GATC 4 cut(s) 396, 408, 897, 901
DpnII GATC 4 cut(s) 394, 406, 895, 899
Eam1104I CTCTTC 4 cut(s) 54, 84, 126, 636
EarI CTCTTC 4 cut(s) 54, 84, 126, 636
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 47
Eco147I AGGCCT 1 cut(s) 80
Eco24I GRGCYC 2 cut(s) 13, 141
Eco47I GGWCC 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 11
Eco57I CTGAAG 2 cut(s) 78, 479
Eco91I GGTNACC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 11
EcoO65I GGTNACC 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 292, 907
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 2 cut(s) 13, 141
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 9 cut(s) 18, 51, 98, 206, 440, 586, 677, 781, 896
FaqI GGGAC 2 cut(s) 18, 57
FatI CATG 9 cut(s) 14, 47, 94, 202, 436, 582, 673, 777, 892
FauNDI CATATG 1 cut(s) 477
FbaI TGATCA 1 cut(s) 394
Fnu4HI GCNGC 6 cut(s) 241, 262, 282, 482, 686, 849
FokI GGATG 2 cut(s) 77, 764
FriOI GRGCYC 2 cut(s) 13, 141
Fsp4HI GCNGC 6 cut(s) 241, 262, 282, 482, 686, 849
GlaI GCGC 1 cut(s) 362
GluI GCNGC 6 cut(s) 241, 262, 282, 482, 686, 849
HaeIII GGCC 4 cut(s) 29, 80, 190, 535
HapII CCGG 1 cut(s) 758
HgaI GACGC 2 cut(s) 431, 800
HhaI GCGC 1 cut(s) 363
Hin1I GRCGYC 1 cut(s) 792
Hin1II CATG 9 cut(s) 18, 51, 98, 206, 440, 586, 677, 781, 896
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HinfI GANTC 4 cut(s) 210, 400, 763, 833
HpaII CCGG 1 cut(s) 758
HphI GGTGA 3 cut(s) 45, 401, 897
Hpy166II GTNNAC 1 cut(s) 832
Hpy188I TCNGA 7 cut(s) 129, 217, 394, 399, 498, 790, 887
Hpy188III TCNNGA 4 cut(s) 37, 404, 644, 893
Hpy8I GTNNAC 1 cut(s) 832
HpyAV CCTTC 4 cut(s) 34, 351, 503, 646
HpyCH4III ACNGT 4 cut(s) 369, 531, 614, 881
HpyCH4IV ACGT 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 4 cut(s) 172, 541, 550, 854
HpyF3I CTNAG 3 cut(s) 126, 167, 214
HpySE526I ACGT 1 cut(s) 33
Hsp92I GRCGYC 1 cut(s) 792
Hsp92II CATG 9 cut(s) 18, 51, 98, 206, 440, 586, 677, 781, 896
HspAI GCGC 1 cut(s) 361
Ksp22I TGATCA 1 cut(s) 394
Kzo9I GATC 4 cut(s) 394, 406, 895, 899
LguI GCTCTTC 2 cut(s) 84, 126
LmnI GCTCC 1 cut(s) 16
Lsp1109I GCAGC 5 cut(s) 252, 268, 273, 493, 697
LweI GCATC 2 cut(s) 55, 594
MabI ACCWGGT 1 cut(s) 907
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 3 cut(s) 20, 51, 348
MalI GATC 4 cut(s) 396, 408, 897, 901
MboI GATC 4 cut(s) 394, 406, 895, 899
MboII GAAGA 9 cut(s) 71, 101, 113, 230, 233, 236, 309, 352, 623
MfeI CAATTG 3 cut(s) 109, 287, 680
MhlI GDGCHC 3 cut(s) 13, 141, 619
MluCI AATT 8 cut(s) 109, 132, 276, 287, 680, 708, 719, 728
MlyI GAGTC 2 cut(s) 409, 827
MmeI TCCRAC 1 cut(s) 865
MnlI CCTC 7 cut(s) 55, 135, 180, 254, 584, 639, 709
MroXI GAANNNNTTC 1 cut(s) 465
MseI TTAA 5 cut(s) 75, 443, 707, 875, 913
MslI CAYNNNNRTG 1 cut(s) 612
MspCI CTTAAG 2 cut(s) 74, 442
MspI CCGG 1 cut(s) 758
MspR9I CCNGG 2 cut(s) 294, 909
MunI CAATTG 3 cut(s) 109, 287, 680
MvaI CCWGG 2 cut(s) 294, 909
MwoI GCNNNNNNNGC 4 cut(s) 172, 541, 550, 854
NcoI CCATGG 1 cut(s) 47
NdeI CATATG 1 cut(s) 477
NdeII GATC 4 cut(s) 394, 406, 895, 899
NlaIII CATG 9 cut(s) 18, 51, 98, 206, 440, 586, 677, 781, 896
NlaIV GGNNCC 1 cut(s) 45
NmuCI GTSAC 2 cut(s) 20, 51
NspI RCATGY 2 cut(s) 440, 781
OliI CACNNNNGTG 1 cut(s) 612
PagI TCATGA 1 cut(s) 892
PaqCI CACCTGC 1 cut(s) 255
PceI AGGCCT 1 cut(s) 80
PciSI GCTCTTC 2 cut(s) 84, 126
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 2 cut(s) 210, 763
PkrI GCNGC 6 cut(s) 242, 263, 283, 483, 687, 850
PleI GAGTC 2 cut(s) 408, 827
PpsI GAGTC 2 cut(s) 408, 827
PshAI GACNNNNGTC 1 cut(s) 49
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 2 cut(s) 292, 907
PspEI GGTNACC 1 cut(s) 51
PspGI CCWGG 2 cut(s) 292, 907
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 3 cut(s) 44, 189, 534
PstI CTGCAG 1 cut(s) 242
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
RseI CAYNNNNRTG 1 cut(s) 612
SacI GAGCTC 1 cut(s) 13
SapI GCTCTTC 2 cut(s) 84, 126
SaqAI TTAA 5 cut(s) 75, 443, 707, 875, 913
SatI GCNGC 6 cut(s) 241, 262, 282, 482, 686, 849
Sau3AI GATC 4 cut(s) 394, 406, 895, 899
Sau96I GGNCC 3 cut(s) 44, 189, 534
SchI GAGTC 2 cut(s) 409, 827
ScrFI CCNGG 2 cut(s) 294, 909
SduI GDGCHC 3 cut(s) 13, 141, 619
SetI ASST 9 cut(s) 13, 36, 58, 269, 417, 486, 643, 690, 913
SexAI ACCWGGT 1 cut(s) 907
SfaNI GCATC 2 cut(s) 55, 594
SfcI CTRYAG 1 cut(s) 238
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 612
SmlI CTYRAG 5 cut(s) 74, 184, 416, 442, 642
SmoI CTYRAG 5 cut(s) 74, 184, 416, 442, 642
Sse9I AATT 8 cut(s) 109, 132, 276, 287, 680, 708, 719, 728
SseBI AGGCCT 1 cut(s) 80
SsiI CCGC 1 cut(s) 848
SstI GAGCTC 1 cut(s) 13
StuI AGGCCT 1 cut(s) 80
StyD4I CCNGG 2 cut(s) 292, 907
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 4 cut(s) 369, 531, 614, 881
TaiI ACGT 1 cut(s) 36
TaqI TCGA 1 cut(s) 898
TasI AATT 8 cut(s) 109, 132, 276, 287, 680, 708, 719, 728
TauI GCSGC 1 cut(s) 851
TfiI GAWTC 2 cut(s) 210, 763
Tru1I TTAA 5 cut(s) 75, 443, 707, 875, 913
Tru9I TTAA 5 cut(s) 75, 443, 707, 875, 913
TscAI CASTG 2 cut(s) 534, 886
TseFI GTSAC 2 cut(s) 20, 51
TseI GCWGC 5 cut(s) 240, 261, 281, 481, 685
Tsp45I GTSAC 2 cut(s) 20, 51
TspDTI ATGAA 4 cut(s) 599, 690, 768, 799
TspGWI ACGGA 2 cut(s) 378, 566
TspRI CASTG 2 cut(s) 534, 886
Vha464I CTTAAG 2 cut(s) 74, 442
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 1 cut(s) 719
XceI RCATGY 2 cut(s) 440, 781
XmnI GAANNNNTTC 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.