pycom16g24290

PLATZ transcription factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0011164
Physical Location & Seq
Reverse (-)
25658895 .. 25660182
1288 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 681 bp
ATGGGTGCTGGAGGTCCTGACGAGGAGGACAACAGGTGGCCGCCATGGCTGAAACCTCTACTGAAAGAGAACTTCTTTGTTCAATGCAAGCTCCATGCCGATTCTCACAAGTCTGAATGCAATATGTACTGCTTGGATTGCGTGAACGGCCCTCTCTGCTCTCTCTGCCTCTCTTACCACAAGGACCACCGTGCTATTCAGATAAGGAGGTCGTCTTACCATGATGTGATAAGGGTTAACGAAATTCAGAAGCATCTGGACATCAGTGGAGTCCAAACCTACATTATCAACAGCGCCAGAGTTGTGTTTCTGAACGAAAGGCCTCAGCCTAGGCCCGGCAAAGGAGTCACAAATACCTGTGAAGTCTGTGAACGCAGCCTCCTCGATTCCTTCAGATTTTGCTCTCTTGGTTGCAAGATTGTGGGGACGTCATCCAGTAATCCCCAGAAGAAGAAGAACAAGTACTCGAAGGCAAGGGCGGGTTCCGATTCAGATGAGTCATACATCAGTAGCAGCCACGGAATTGCAAGGTTCAAAAGCAACAGCCACCACAGCAACAACAAAGTTCAGAGCTTCACTCCATCAACGCCGCCTCCAACTTCTGCTAATTACAAAGCGGCCAAGAGAAGGAAGGGCATTCCCCACAGAGCCCCAATGGGAGGACTAATCATAGAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

227

Amino Acids

25.35

Weight (kDa)

9.37

Isoelectric Point (pI)

46.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 69 - 140 6.8e-32 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32700 AT1G32700 AT4G17900 AT4G17900
fragaria_vesca FvH4_5g22220
malus_domestica MD06G1035500.v1.1 MD16G1273400.v1.1
prunus_persica Prupe.5G034300_v2.0.a1
pyrus_communis pycom06g02920 pycom16g24290
rosa_chinensis RchiOBHm_Chr7g0209901
rosa_laevigata RLG00000003079
rosa_multiflora Rmu_sc0003776.1_g000013
rosa_roxburghii Rroxscaffold_3G00248830
rosa_rugosa Rorug07G0117100
rosa_samantha Rh7AG251200 Rh7BG245500 Rh7CG267400 Rh7DG257200
rosa_wichuraiana Rw7G021270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 431
AciI CCGC 4 cut(s) 41, 479, 590, 617
AcoI YGGCCR 2 cut(s) 38, 618
AcsI RAATTY 1 cut(s) 243
AcuI CTGAAG 1 cut(s) 376
AcyI GRCGYC 1 cut(s) 428
AfaI GTAC 2 cut(s) 128, 464
AfiI CCNNNNNNNGG 4 cut(s) 335, 341, 627, 659
AgsI TTSAA 2 cut(s) 83, 535
AloI GAACNNNNNNTCC 2 cut(s) 363, 395
AluBI AGCT 2 cut(s) 91, 573
AluI AGCT 2 cut(s) 91, 573
AoxI GGCC 5 cut(s) 38, 148, 320, 332, 618
ApeKI GCWGC 2 cut(s) 375, 513
ApoI RAATTY 1 cut(s) 243
AspA2I CCTAGG 1 cut(s) 329
AspLEI GCGC 1 cut(s) 296
AspS9I GGNCC 4 cut(s) 14, 149, 184, 333
AsuC2I CCSGG 1 cut(s) 336
AvaII GGWCC 2 cut(s) 14, 184
AvrII CCTAGG 1 cut(s) 329
BanII GRGCYC 1 cut(s) 652
BarI GAAGNNNNNNTAC 2 cut(s) 446, 478
BbvCI CCTCAGC 1 cut(s) 324
BbvI GCAGC 2 cut(s) 387, 525
BccI CCATC 1 cut(s) 589
BceAI ACGGC 1 cut(s) 163
BcgI CGANNNNNNTGC 2 cut(s) 364, 398
BcnI CCSGG 1 cut(s) 336
BfaI CTAG 1 cut(s) 330
BfoI RGCGCY 1 cut(s) 297
BglI GCCNNNNNGGC 1 cut(s) 46
BisI GCNGC 5 cut(s) 41, 376, 514, 590, 618
BlnI CCTAGG 1 cut(s) 329
BlsI GCNGC 5 cut(s) 42, 377, 515, 591, 619
BmcAI AGTACT 1 cut(s) 464
Bme1390I CCNGG 1 cut(s) 336
Bme18I GGWCC 2 cut(s) 14, 184
BmgT120I GGNCC 4 cut(s) 14, 149, 184, 333
BmiI GGNNCC 1 cut(s) 484
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 1 cut(s) 262
BplI GAGNNNNNCTC 2 cut(s) 562, 594
BpmI CTGGAG 1 cut(s) 30
Bpu10I CCTNAGC 1 cut(s) 324
BpuMI CCSGG 1 cut(s) 336
BsaHI GRCGYC 1 cut(s) 428
BsaJI CCNNGG 3 cut(s) 44, 329, 517
BsaXI ACNNNNNCTCC 4 cut(s) 363, 393, 577, 607
Bsc4I CCNNNNNNNGG 4 cut(s) 335, 341, 627, 659
Bse1I ACTGG 1 cut(s) 435
BseDI CCNNGG 3 cut(s) 44, 329, 517
BseGI GGATG 1 cut(s) 431
BseLI CCNNNNNNNGG 4 cut(s) 335, 341, 627, 659
BseMII CTCAG 1 cut(s) 338
BseNI ACTGG 1 cut(s) 435
BseRI GAGGAG 2 cut(s) 38, 371
BseXI GCAGC 2 cut(s) 387, 525
BshFI GGCC 5 cut(s) 40, 150, 322, 334, 620
BsiSI CCGG 1 cut(s) 336
BslFI GGGAC 1 cut(s) 439
BslI CCNNNNNNNGG 4 cut(s) 335, 341, 627, 659
BsmFI GGGAC 1 cut(s) 439
BsmI GAATGC 2 cut(s) 122, 636
BsnI GGCC 5 cut(s) 40, 150, 322, 334, 620
Bsp1286I GDGCHC 1 cut(s) 652
Bsp19I CCATGG 1 cut(s) 44
BspACI CCGC 4 cut(s) 41, 479, 590, 617
BspANI GGCC 5 cut(s) 40, 150, 322, 334, 620
BspCNI CTCAG 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 484
BsrI ACTGG 1 cut(s) 435
BssECI CCNNGG 3 cut(s) 44, 329, 517
BssNI GRCGYC 1 cut(s) 428
BssT1I CCWWGG 2 cut(s) 44, 329
Bst4CI ACNGT 1 cut(s) 191
BstACI GRCGYC 1 cut(s) 428
BstC8I GCNNGC 1 cut(s) 89
BstDEI CTNAG 1 cut(s) 324
BstDSI CCRYGG 2 cut(s) 44, 517
BstF5I GGATG 1 cut(s) 431
BstH2I RGCGCY 1 cut(s) 297
BstHHI GCGC 1 cut(s) 296
BstMWI GCNNNNNNNGC 6 cut(s) 46, 138, 147, 156, 165, 552
BstSCI CCNGG 1 cut(s) 334
BstV1I GCAGC 2 cut(s) 387, 525
BsuRI GGCC 5 cut(s) 40, 150, 322, 334, 620
BtgI CCRYGG 2 cut(s) 44, 517
BtsCI GGATG 1 cut(s) 431
BtsIMutI CAGTG 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 89
CfoI GCGC 1 cut(s) 296
Cfr13I GGNCC 4 cut(s) 14, 149, 184, 333
Csp6I GTAC 2 cut(s) 127, 463
CviAII CATG 3 cut(s) 45, 95, 221
CviQI GTAC 2 cut(s) 127, 463
DdeI CTNAG 1 cut(s) 324
EaeI YGGCCR 2 cut(s) 38, 618
Eco130I CCWWGG 2 cut(s) 44, 329
Eco147I AGGCCT 1 cut(s) 322
Eco24I GRGCYC 1 cut(s) 652
Eco47I GGWCC 2 cut(s) 14, 184
Eco57I CTGAAG 1 cut(s) 376
EcoO109I RGGNCCY 1 cut(s) 14
EcoT14I CCWWGG 2 cut(s) 44, 329
EcoT38I GRGCYC 1 cut(s) 652
ErhI CCWWGG 2 cut(s) 44, 329
FaeI CATG 3 cut(s) 48, 98, 224
FaiI YATR 6 cut(s) 46, 96, 125, 222, 502, 671
FaqI GGGAC 1 cut(s) 439
FatI CATG 3 cut(s) 44, 94, 220
FauI CCCGC 1 cut(s) 472
Fnu4HI GCNGC 5 cut(s) 41, 376, 514, 590, 618
FokI GGATG 1 cut(s) 418
FriOI GRGCYC 1 cut(s) 652
Fsp4HI GCNGC 5 cut(s) 41, 376, 514, 590, 618
FspBI CTAG 1 cut(s) 330
GlaI GCGC 1 cut(s) 295
GluI GCNGC 5 cut(s) 41, 376, 514, 590, 618
GsuI CTGGAG 1 cut(s) 30
HaeII RGCGCY 1 cut(s) 297
HaeIII GGCC 5 cut(s) 40, 150, 322, 334, 620
HapII CCGG 1 cut(s) 336
HhaI GCGC 1 cut(s) 296
Hin1I GRCGYC 1 cut(s) 428
Hin1II CATG 3 cut(s) 48, 98, 224
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 6 cut(s) 101, 270, 345, 386, 488, 497
HpaI GTTAAC 1 cut(s) 238
HpaII CCGG 1 cut(s) 336
Hpy166II GTNNAC 3 cut(s) 145, 238, 371
Hpy188I TCNGA 8 cut(s) 115, 201, 249, 312, 395, 487, 493, 570
Hpy188III TCNNGA 2 cut(s) 17, 257
Hpy8I GTNNAC 3 cut(s) 145, 238, 371
HpyAV CCTTC 4 cut(s) 400, 463, 621, 625
HpyCH4III ACNGT 1 cut(s) 191
HpyCH4IV ACGT 1 cut(s) 428
HpyCH4V TGCA 4 cut(s) 87, 120, 414, 527
HpyF10VI GCNNNNNNNGC 6 cut(s) 46, 138, 147, 156, 165, 552
HpyF3I CTNAG 1 cut(s) 324
HpySE526I ACGT 1 cut(s) 428
Hsp92I GRCGYC 1 cut(s) 428
Hsp92II CATG 3 cut(s) 48, 98, 224
HspAI GCGC 1 cut(s) 294
KspAI GTTAAC 1 cut(s) 238
LmnI GCTCC 1 cut(s) 96
LpnPI CCDG 8 cut(s) 19, 30, 242, 310, 349, 370, 448, 458
Lsp1109I GCAGC 2 cut(s) 387, 525
LweI GCATC 1 cut(s) 262
MaeI CTAG 1 cut(s) 330
MaeII ACGT 1 cut(s) 428
MaeIII GTNAC 1 cut(s) 346
MboII GAAGA 3 cut(s) 460, 463, 466
MhlI GDGCHC 1 cut(s) 652
MluCI AATT 3 cut(s) 243, 522, 607
MlyI GAGTC 3 cut(s) 279, 354, 506
MmeI TCCRAC 1 cut(s) 620
MseI TTAA 1 cut(s) 237
MspI CCGG 1 cut(s) 336
MspR9I CCNGG 1 cut(s) 336
Mva1269I GAATGC 2 cut(s) 122, 636
MwoI GCNNNNNNNGC 6 cut(s) 46, 138, 147, 156, 165, 552
NciI CCSGG 1 cut(s) 336
NcoI CCATGG 1 cut(s) 44
NlaIII CATG 3 cut(s) 48, 98, 224
NlaIV GGNNCC 1 cut(s) 484
NmuCI GTSAC 1 cut(s) 346
PceI AGGCCT 1 cut(s) 322
PctI GAATGC 2 cut(s) 122, 636
PfeI GAWTC 3 cut(s) 101, 386, 488
PkrI GCNGC 5 cut(s) 42, 377, 515, 591, 619
PleI GAGTC 3 cut(s) 278, 353, 505
PpsI GAGTC 3 cut(s) 278, 353, 505
PpuMI RGGWCCY 1 cut(s) 14
Psp5II RGGWCCY 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 484
PspPI GGNCC 4 cut(s) 14, 149, 184, 333
PspPPI RGGWCCY 1 cut(s) 14
RsaI GTAC 2 cut(s) 128, 464
RsaNI GTAC 2 cut(s) 127, 463
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 5 cut(s) 41, 376, 514, 590, 618
Sau96I GGNCC 4 cut(s) 14, 149, 184, 333
ScaI AGTACT 1 cut(s) 464
SchI GAGTC 3 cut(s) 279, 354, 506
ScrFI CCNGG 1 cut(s) 336
SduI GDGCHC 1 cut(s) 652
SfaNI GCATC 1 cut(s) 262
SinI GGWCC 2 cut(s) 14, 184
Sse9I AATT 3 cut(s) 243, 522, 607
SseBI AGGCCT 1 cut(s) 322
SsiI CCGC 4 cut(s) 41, 479, 590, 617
SspMI CTAG 1 cut(s) 330
StuI AGGCCT 1 cut(s) 322
StyD4I CCNGG 1 cut(s) 334
StyI CCWWGG 2 cut(s) 44, 329
TaaI ACNGT 1 cut(s) 191
TaiI ACGT 1 cut(s) 431
TaqI TCGA 2 cut(s) 384, 467
TasI AATT 3 cut(s) 243, 522, 607
TatI WGTACW 2 cut(s) 126, 462
TauI GCSGC 3 cut(s) 43, 592, 620
TfiI GAWTC 3 cut(s) 101, 386, 488
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 2 cut(s) 375, 513
Tsp45I GTSAC 1 cut(s) 346
TspGWI ACGGA 1 cut(s) 534
TspRI CASTG 1 cut(s) 271
VpaK11BI GGWCC 2 cut(s) 14, 184
XapI RAATTY 1 cut(s) 243
XmaJI CCTAGG 1 cut(s) 329
XspI CTAG 1 cut(s) 330
ZraI GACGTC 1 cut(s) 429
ZrmI AGTACT 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.