Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0012770

Physical Location & Seq

Genomic Coordinates Reverse (-)

197164 .. 199445

Gene Structure 2282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTGGAGTATTTGTTTTCTTCTCAGAGAGTTTAAGCTGATCAGCTGCAATGATTTTCTCTGTAAGCGAGCGATGCCCTTTTCAACGTTTGGTGCATCTGGCCATGGAAGGCTGGAAGGCAAGGTAGCCATAATAACAGGATCAGCTAGCGGGCTTGGGAAGGCCACGGCCCACGAGTTCATCCGACATGGAGCACACGTCATAATTGCGGACTCAGATTCTGAGCTGGGTCCACAAGTTGTCAAAGAGCTGGGCCCCGCATCCTACTTTGTCCAGTGCGACGTTGCCATTGAGTCTCAGATAGCAGAGGTTGTAGAAACCGCCATGGCCCGTCATGGAAAACTTGACATAATGTACAACAACGCGGGCATAACAGGCCCAGCGTTCCCGCCCAGCATCGCTGACCTGAACCTTGAAGAGTTTGACAGCGTGATCCGGGTCAACTTGCGAGGCGCGGTTGCTGGGATAAAGCATGCGGCCCGAGTTATGATACCTGCGGGCTCAGGCTCCATACTGTGCACGTCCAGCATAGCTGGGCTGTTGGGTGGCCTTGGGCCTCACCCCTACTCGATATCGAAATTTACGATACCTGGCCTGGTGAAATCACTGGCGAGCGAGCTGTGCCGAAACGGGATCCGAGTCAATTGCATATCGCCGGGTCCAATACCGACGCCACTGGCGGTGCGGGAAATAAAGCAGTTTTATCCGGGGACGACGGAGGAGCAAGTTAAAGAGATAGTGAATGGGCTGGGAGAGCTCAAGGGTGCGAAGTGTGAGGAGATAGATGTGGCGCAAGCGGCGGTGTATCTGGCGTCGGATGAAGCAAAGTATGTGACGGGTCATAATCTGGTGGTGGATGGAGGGTTCACCAGCTTCAAAAGTCTTAGCTTCCCTCCTTCTCGGGATCAACCTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

306

Amino Acids

32.33

Weight (kDa)

6.25

Isoelectric Point (pI)

34.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	41 - 228	6.5e-49	short chain dehydrogenase
KR	PF08659	44 - 203	4.4e-10	KR domain
adh_short_C2	PF13561	47 - 290	1.7e-59	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26770
malus_domestica	MD09G1003900.v1.1 MD17G1007500.v1.1
prunus_persica	Prupe.3G312700_v2.0.a1 Prupe.3G312700_v2.0.a1
pyrus_communis	pycom17g00310
rosa_chinensis	RchiOBHm_Chr2g0176411
rosa_laevigata	RLG00000022411
rosa_multiflora	Rmu_co7987744.1_g000001 Rmu_sc0009140.1_g000006 Rmu_sc0011904.1_g000018
rosa_roxburghii	Rroxscaffold_2G00076470
rosa_rugosa	Rorug02G0594000
rosa_samantha	Rh2AG672500 Rh2BG684000 Rh2CG646700 Rh2DG697500
rosa_wichuraiana	Rw2G055160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	502
AccII	CGCG	2 cut(s)	365, 455
AclI	AACGTT	1 cut(s)	86
AclWI	GGATC	5 cut(s)	148, 427, 628, 641, 912
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	578
AcyI	GRCGYC	2 cut(s)	671, 812
AfaI	GTAC	1 cut(s)	356
AflIII	ACRYGT	1 cut(s)	196
AgsI	TTSAA	3 cut(s)	84, 416, 877
AjiI	CACGTC	2 cut(s)	199, 522
AjnI	CCWGG	2 cut(s)	589, 594
AloI	GAACNNNNNNTCC	2 cut(s)	848, 880
Alw21I	GWGCWC	3 cut(s)	196, 521, 759
Alw26I	GTCTC	1 cut(s)	300
Alw44I	GTGCAC	1 cut(s)	517
AlwI	GGATC	5 cut(s)	148, 427, 628, 641, 912
AlwNI	CAGNNNCTG	1 cut(s)	221
Ama87I	CYCGRG	2 cut(s)	480, 900
ApaI	GGGCCC	1 cut(s)	257
ApaLI	GTGCAC	1 cut(s)	517
ApeKI	GCWGC	1 cut(s)	45
ApoI	RAATTY	1 cut(s)	578
AspLEI	GCGC	2 cut(s)	455, 793
AspS9I	GGNCC	9 cut(s)	169, 230, 253, 254, 328, 377, 478, 554, 659
AsuC2I	CCSGG	3 cut(s)	437, 657, 708
AsuHPI	GGTGA	3 cut(s)	551, 610, 859
AsuNHI	GCTAGC	1 cut(s)	146
AvaI	CYCGRG	2 cut(s)	480, 900
AvaII	GGWCC	2 cut(s)	230, 659
BaeGI	GKGCMC	2 cut(s)	257, 521
BalI	TGGCCA	1 cut(s)	102
BamHI	GGATCC	1 cut(s)	633
BanII	GRGCYC	3 cut(s)	257, 503, 759
BauI	CACGAG	1 cut(s)	173
Bbv12I	GWGCWC	3 cut(s)	196, 521, 759
BbvI	GCAGC	1 cut(s)	32
BccI	CCATC	1 cut(s)	851
BceAI	ACGGC	1 cut(s)	183
BcgI	CGANNNNNNTGC	2 cut(s)	627, 661
BciT130I	CCWGG	2 cut(s)	591, 596
BclI	TGATCA	1 cut(s)	39
BcnI	CCSGG	3 cut(s)	437, 657, 708
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	1 cut(s)	147
BfuAI	ACCTGC	1 cut(s)	502
BisI	GCNGC	3 cut(s)	46, 477, 798
BlsI	GCNGC	3 cut(s)	47, 478, 799
Bme1390I	CCNGG	5 cut(s)	437, 591, 596, 657, 708
Bme18I	GGWCC	2 cut(s)	230, 659
BmeT110I	CYCGRG	2 cut(s)	480, 900
BmgBI	CACGTC	2 cut(s)	199, 522
BmgT120I	GGNCC	9 cut(s)	169, 230, 253, 254, 328, 377, 478, 554, 659
BmiI	GGNNCC	6 cut(s)	231, 255, 256, 508, 635, 660
BmrFI	CCNGG	5 cut(s)	437, 591, 596, 657, 708
BmsI	GCATC	4 cut(s)	63, 104, 269, 405
BmtI	GCTAGC	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	502
BpuEI	CTTGAG	1 cut(s)	743
BpuMI	CCSGG	3 cut(s)	437, 657, 708
BsaHI	GRCGYC	2 cut(s)	671, 812
BsaJI	CCNNGG	5 cut(s)	103, 165, 324, 550, 707
BsaXI	ACNNNNNCTCC	3 cut(s)	28, 183, 213
Bse1I	ACTGG	3 cut(s)	274, 612, 681
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	2 cut(s)	591, 596
BseDI	CCNNGG	5 cut(s)	103, 165, 324, 550, 707
BseGI	GGATG	4 cut(s)	180, 260, 823, 862
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	5 cut(s)	37, 213, 228, 311, 516
BseNI	ACTGG	3 cut(s)	274, 612, 681
BseRI	GAGGAG	2 cut(s)	734, 791
BseSI	GKGCMC	2 cut(s)	257, 521
BseXI	GCAGC	1 cut(s)	32
BseYI	CCCAGC	7 cut(s)	226, 250, 379, 392, 461, 533, 748
Bsh1236I	CGCG	2 cut(s)	365, 455
BsiHKAI	GWGCWC	3 cut(s)	196, 521, 759
BsiHKCI	CYCGRG	2 cut(s)	480, 900
BsiSI	CCGG	3 cut(s)	436, 656, 707
BslFI	GGGAC	1 cut(s)	724
BsmAI	GTCTC	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	724
BsoBI	CYCGRG	2 cut(s)	480, 900
Bsp120I	GGGCCC	1 cut(s)	253
Bsp1286I	GDGCHC	5 cut(s)	196, 257, 503, 521, 759
Bsp1407I	TGTACA	1 cut(s)	354
Bsp143I	GATC	5 cut(s)	39, 140, 432, 633, 904
Bsp19I	CCATGG	2 cut(s)	103, 324
BspCNI	CTCAG	5 cut(s)	36, 214, 227, 310, 515
BspFNI	CGCG	2 cut(s)	365, 455
BspLI	GGNNCC	6 cut(s)	231, 255, 256, 508, 635, 660
BspMI	ACCTGC	1 cut(s)	502
BspOI	GCTAGC	1 cut(s)	150
BspPI	GGATC	5 cut(s)	148, 427, 628, 641, 912
BsrDI	GCAATG	1 cut(s)	55
BsrGI	TGTACA	1 cut(s)	354
BsrI	ACTGG	3 cut(s)	274, 612, 681
BssECI	CCNNGG	5 cut(s)	103, 165, 324, 550, 707
BssMI	GATC	5 cut(s)	39, 140, 432, 633, 904
BssNI	GRCGYC	2 cut(s)	671, 812
BssSI	CACGAG	1 cut(s)	173
BssT1I	CCWWGG	3 cut(s)	103, 324, 550
Bst2BI	CACGAG	1 cut(s)	173
Bst2UI	CCWGG	2 cut(s)	591, 596
Bst4CI	ACNGT	1 cut(s)	516
Bst6I	CTCTTC	1 cut(s)	411
BstACI	GRCGYC	2 cut(s)	671, 812
BstAUI	TGTACA	1 cut(s)	354
BstC8I	GCNNGC	9 cut(s)	69, 148, 152, 367, 474, 499, 613, 617, 795
BstDEI	CTNAG	6 cut(s)	23, 214, 222, 297, 502, 884
BstDSI	CCRYGG	3 cut(s)	103, 165, 324
BstF5I	GGATG	4 cut(s)	180, 260, 823, 862
BstFNI	CGCG	2 cut(s)	365, 455
BstHHI	GCGC	2 cut(s)	455, 793
BstKTI	GATC	5 cut(s)	42, 143, 435, 636, 907
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	5 cut(s)	39, 140, 432, 633, 904
BstMWI	GCNNNNNNNGC	6 cut(s)	73, 375, 525, 621, 754, 797
BstNI	CCWGG	2 cut(s)	591, 596
BstNSI	RCATGY	1 cut(s)	476
BstSCI	CCNGG	5 cut(s)	435, 589, 594, 655, 706
BstSLI	GKGCMC	2 cut(s)	257, 521
BstUI	CGCG	2 cut(s)	365, 455
BstV1I	GCAGC	1 cut(s)	32
BstX2I	RGATCY	1 cut(s)	633
BstYI	RGATCY	1 cut(s)	633
BtgI	CCRYGG	3 cut(s)	103, 165, 324
BtgZI	GCGATG	2 cut(s)	86, 382
BtrI	CACGTC	2 cut(s)	199, 522
BtsCI	GGATG	4 cut(s)	180, 260, 823, 862
BtsIMutI	CAGTG	3 cut(s)	281, 605, 674
BveI	ACCTGC	1 cut(s)	502
Cac8I	GCNNGC	9 cut(s)	69, 148, 152, 367, 474, 499, 613, 617, 795
CaiI	CAGNNNCTG	1 cut(s)	221
CfoI	GCGC	2 cut(s)	455, 793
Cfr13I	GGNCC	9 cut(s)	169, 230, 253, 254, 328, 377, 478, 554, 659
CseI	GACGC	2 cut(s)	679, 801
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	5 cut(s)	104, 188, 325, 335, 473
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	6 cut(s)	23, 214, 222, 297, 502, 884
DpnI	GATC	5 cut(s)	41, 142, 434, 635, 906
DpnII	GATC	5 cut(s)	39, 140, 432, 633, 904
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Ecl136II	GAGCTC	1 cut(s)	757
Eco130I	CCWWGG	3 cut(s)	103, 324, 550
Eco24I	GRGCYC	3 cut(s)	257, 503, 759
Eco32I	GATATC	1 cut(s)	573
Eco47I	GGWCC	2 cut(s)	230, 659
Eco53kI	GAGCTC	1 cut(s)	757
Eco88I	CYCGRG	2 cut(s)	480, 900
EcoICRI	GAGCTC	1 cut(s)	757
EcoO109I	RGGNCCY	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	589, 594
EcoRV	GATATC	1 cut(s)	573
EcoT14I	CCWWGG	3 cut(s)	103, 324, 550
EcoT38I	GRGCYC	3 cut(s)	257, 503, 759
ErhI	CCWWGG	3 cut(s)	103, 324, 550
FaeI	CATG	5 cut(s)	107, 191, 328, 338, 476
FaqI	GGGAC	1 cut(s)	724
FatI	CATG	5 cut(s)	103, 187, 324, 334, 472
FauI	CCCGC	6 cut(s)	143, 265, 358, 396, 490, 678
FbaI	TGATCA	1 cut(s)	39
Fnu4HI	GCNGC	3 cut(s)	46, 477, 798
FokI	GGATG	4 cut(s)	167, 247, 830, 869
FriOI	GRGCYC	3 cut(s)	257, 503, 759
Fsp4HI	GCNGC	3 cut(s)	46, 477, 798
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	2 cut(s)	454, 792
GluI	GCNGC	3 cut(s)	46, 477, 798
GsaI	CCCAGC	7 cut(s)	230, 254, 383, 396, 465, 537, 752
HapII	CCGG	3 cut(s)	436, 656, 707
HgaI	GACGC	2 cut(s)	679, 801
HhaI	GCGC	2 cut(s)	455, 793
Hin1I	GRCGYC	2 cut(s)	671, 812
Hin1II	CATG	5 cut(s)	107, 191, 328, 338, 476
Hin6I	GCGC	2 cut(s)	453, 791
HinP1I	GCGC	2 cut(s)	453, 791
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HinfI	GANTC	4 cut(s)	212, 218, 293, 639
HpaII	CCGG	3 cut(s)	436, 656, 707
HphI	GGTGA	3 cut(s)	551, 610, 859
Hpy166II	GTNNAC	4 cut(s)	233, 442, 519, 867
Hpy188I	TCNGA	7 cut(s)	26, 185, 217, 223, 300, 638, 817
Hpy188III	TCNNGA	1 cut(s)	902
Hpy8I	GTNNAC	4 cut(s)	233, 442, 519, 867
Hpy99I	CGWCG	4 cut(s)	284, 673, 718, 817
HpyAV	CCTTC	4 cut(s)	102, 110, 154, 906
HpyCH4III	ACNGT	1 cut(s)	516
HpyCH4IV	ACGT	4 cut(s)	86, 198, 282, 521
HpyCH4V	TGCA	4 cut(s)	48, 95, 519, 648
HpyF10VI	GCNNNNNNNGC	6 cut(s)	73, 375, 525, 621, 754, 797
HpyF3I	CTNAG	6 cut(s)	23, 214, 222, 297, 502, 884
HpySE526I	ACGT	4 cut(s)	86, 198, 282, 521
Hsp92I	GRCGYC	2 cut(s)	671, 812
Hsp92II	CATG	5 cut(s)	107, 191, 328, 338, 476
HspAI	GCGC	2 cut(s)	453, 791
Ksp22I	TGATCA	1 cut(s)	39
Kzo9I	GATC	5 cut(s)	39, 140, 432, 633, 904
LmnI	GCTCC	3 cut(s)	191, 512, 721
Lsp1109I	GCAGC	1 cut(s)	32
LweI	GCATC	4 cut(s)	63, 104, 269, 405
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	4 cut(s)	86, 198, 282, 521
MaeIII	GTNAC	1 cut(s)	832
MalI	GATC	5 cut(s)	41, 142, 434, 635, 906
MboI	GATC	5 cut(s)	39, 140, 432, 633, 904
MboII	GAAGA	2 cut(s)	11, 428
MfeI	CAATTG	1 cut(s)	643
MflI	RGATCY	1 cut(s)	633
MhlI	GDGCHC	5 cut(s)	196, 257, 503, 521, 759
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	3 cut(s)	204, 578, 643
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	3 cut(s)	206, 302, 648
MmeI	TCCRAC	2 cut(s)	208, 795
MnlI	CCTC	7 cut(s)	301, 443, 567, 712, 769, 854, 903
Mox20I	TGGCCA	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	2 cut(s)	33, 729
Msp20I	TGGCCA	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	45
MspI	CCGG	3 cut(s)	436, 656, 707
MspR9I	CCNGG	5 cut(s)	437, 591, 596, 657, 708
MunI	CAATTG	1 cut(s)	643
MvaI	CCWGG	2 cut(s)	591, 596
MvnI	CGCG	2 cut(s)	365, 455
MwoI	GCNNNNNNNGC	6 cut(s)	73, 375, 525, 621, 754, 797
NciI	CCSGG	3 cut(s)	437, 657, 708
NcoI	CCATGG	2 cut(s)	103, 324
NdeII	GATC	5 cut(s)	39, 140, 432, 633, 904
NheI	GCTAGC	1 cut(s)	146
NlaIII	CATG	5 cut(s)	107, 191, 328, 338, 476
NlaIV	GGNNCC	6 cut(s)	231, 255, 256, 508, 635, 660
NmuCI	GTSAC	1 cut(s)	832
NspI	RCATGY	1 cut(s)	476
PaeI	GCATGC	1 cut(s)	476
PcsI	WCGNNNNNNNCGW	1 cut(s)	581
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	3 cut(s)	47, 478, 799
PleI	GAGTC	3 cut(s)	206, 301, 647
PpsI	GAGTC	3 cut(s)	206, 301, 647
Psp124BI	GAGCTC	1 cut(s)	759
Psp1406I	AACGTT	1 cut(s)	86
Psp6I	CCWGG	2 cut(s)	589, 594
PspFI	CCCAGC	7 cut(s)	226, 250, 379, 392, 461, 533, 748
PspGI	CCWGG	2 cut(s)	589, 594
PspN4I	GGNNCC	6 cut(s)	231, 255, 256, 508, 635, 660
PspOMI	GGGCCC	1 cut(s)	253
PspPI	GGNCC	9 cut(s)	169, 230, 253, 254, 328, 377, 478, 554, 659
PstNI	CAGNNNCTG	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	633
PvuII	CAGCTG	1 cut(s)	45
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SacI	GAGCTC	1 cut(s)	759
SaqAI	TTAA	2 cut(s)	33, 729
SatI	GCNGC	3 cut(s)	46, 477, 798
Sau3AI	GATC	5 cut(s)	39, 140, 432, 633, 904
Sau96I	GGNCC	9 cut(s)	169, 230, 253, 254, 328, 377, 478, 554, 659
SchI	GAGTC	3 cut(s)	206, 302, 648
ScrFI	CCNGG	5 cut(s)	437, 591, 596, 657, 708
SduI	GDGCHC	5 cut(s)	196, 257, 503, 521, 759
SfaNI	GCATC	4 cut(s)	63, 104, 269, 405
SinI	GGWCC	2 cut(s)	230, 659
SmlI	CTYRAG	1 cut(s)	758
SmoI	CTYRAG	1 cut(s)	758
SphI	GCATGC	1 cut(s)	476
Sse9I	AATT	3 cut(s)	204, 578, 643
SspMI	CTAG	1 cut(s)	147
SstI	GAGCTC	1 cut(s)	759
StyD4I	CCNGG	5 cut(s)	435, 589, 594, 655, 706
StyI	CCWWGG	3 cut(s)	103, 324, 550
TaaI	ACNGT	1 cut(s)	516
TaiI	ACGT	4 cut(s)	89, 201, 285, 524
TaqI	TCGA	2 cut(s)	569, 575
TasI	AATT	3 cut(s)	204, 578, 643
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	2 cut(s)	479, 800
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	2 cut(s)	33, 729
Tru9I	TTAA	2 cut(s)	33, 729
TscAI	CASTG	3 cut(s)	281, 612, 681
TseFI	GTSAC	1 cut(s)	832
TseI	GCWGC	1 cut(s)	45
Tsp45I	GTSAC	1 cut(s)	832
TspDTI	ATGAA	2 cut(s)	169, 834
TspGWI	ACGGA	1 cut(s)	731
TspRI	CASTG	3 cut(s)	281, 612, 681
VneI	GTGCAC	1 cut(s)	517
VpaK11BI	GGWCC	2 cut(s)	230, 659
XapI	RAATTY	1 cut(s)	578
XceI	RCATGY	1 cut(s)	476
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.