pycom17g03160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0012020
Physical Location & Seq
Reverse (-)
2067781 .. 2071304
3524 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1317 bp
ATGGGAAACTTTCTGGACAAGGAGCCACCGCCGCCGATGGTGCTCGTTCCGCCGCTCTTCGACTACCCTCCTCTCGCCGCCCGCACCAGGATGTTGGAGTCGTCGTATGACTTGTTGTTTGGGAAGCTTGCTTTGAAATGTCTGTTTGACGATTACTTTGAACAAGCTCGGCATTTCAGCACAATGATCATGCTGAAGCCCATCGACGACCCTCACGTCGATTTGATTGCAACTGTTGCAGGACCGCTCGATCACAAACCCGAGGAGAATATAATTGGAAATGCATTTTTCCGCTGGCAAAGTGATGTTGATGATCCTCACACATTCATGGACCTCTTCGTGTCAAATGCTGATCCGGTTTTGCAGATGAGGGCCTGTGGTTACTACCCTAGATATGGATTGGGAGCATTTGGAATTTTCCCAATGTTGCTGAAAAAAAGAATAACTTCTGAAGACATTGGTGTTATGGGGTTAAGATATGGCTCGTCAAACTTGTCAATTGGCGCTACTGCCATGCCCTTCTCCTTGAAAGATGATTGTCCAAGAAGGGCATGGTTGGTGAGCAAGATGGGAAGACTAACAGCTGGGGTGCAGTATGAGCCGGAATATGGGAGTAAAGATACTCACAACTACAAAAATTTAAAGAATTGGAGTGCTGCAATCGGTTACGGAGTGGGATCAAGCAGCCCTTTGAGTCCATCATTCAATTTTGGTCTCGAGCTATCAAGAAGTTCTCAGTTCATCGCCTCATTTTATCAACACGTGGTGGTCCAAAGACGGGTGAAAAACCCCCTTGAAGAAAATGAAGTAGTTGGAATTACGAATTATATCGATTTCGGCTTTGAATTGCAGACAAGGGTTGATGATATCAAATCATCAAGCGATGTACCAGAATCAAGCGATGTACCTAAATCAACCAATGGACCTAATGTCCCAGATTCCACCTTTCAAGTAGCTGCATCTTGGCAAGCCAATAAGAACTTCATGCTGAAGGGAAAGGTGGGCCCTCTCAGCTCGTCGATAGCATTGGCATTTAAGTCCTGGTGGAAACCTTCTTTCACATTCAGCGTTTCAGCTACGAGAAATCACGTTGTTGGTGAGACAGGTTACGGTTTTGGCCTTCGTGTGGAGAATCTTAGACAAGCCAGTTATCAAAGAGCTGATCCAAATTTCGTCATGTTGACACCGAATAAGGAGCACCTGGCCGAAGGCATTGTTTGGAAAGTTGGAAAAAGACCGATGCTACAGTCAGATATAAATGCTGGAAATTTCGACGGCATTCCAAAGGAACTAAGACCCCTGGGAAAAATCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

439

Amino Acids

48.88

Weight (kDa)

7.09

Isoelectric Point (pI)

38.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012020)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27930 AT3G27930 AT3G27930
fragaria_vesca FvH4_6g50760
malus_domestica MD09G1032600.v1.1 MD17G1034200.v1.1
prunus_persica Prupe.3G285400_v2.0.a1
pyrus_communis pycom17g03160
rosa_chinensis RchiOBHm_Chr2g0171701
rosa_laevigata RLG00000022030
rosa_multiflora Rmu_ssc0000252.1_g000012
rosa_roxburghii Rroxscaffold_2G00080510
rosa_rugosa Rorug02G0555400
rosa_samantha Rh2BG641000 Rh2BG643500 Rh2CG609200 Rh2DG651900 Rh2DG657200
rosa_wichuraiana Rw2G052180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 215
AccBSI CCGCTC 2 cut(s) 55, 247
AciI CCGC 8 cut(s) 29, 32, 50, 53, 78, 82, 245, 292
AclWI GGATC 4 cut(s) 308, 347, 685, 1157
AcoI YGGCCR 1 cut(s) 1203
AcsI RAATTY 4 cut(s) 414, 637, 1168, 1267
AcuI CTGAAG 3 cut(s) 215, 471, 1010
AcvI CACGTG 1 cut(s) 763
AdeI CACNNNGTG 1 cut(s) 766
AfaI GTAC 2 cut(s) 888, 906
AfiI CCNNNNNNNGG 5 cut(s) 87, 395, 608, 778, 1126
AflIII ACRYGT 1 cut(s) 760
AgsI TTSAA 7 cut(s) 136, 161, 529, 706, 797, 845, 950
AhdI GACNNNNNGTC 1 cut(s) 929
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 4 cut(s) 86, 1040, 1200, 1299
AjuI GAANNNNNNNTTGG 2 cut(s) 965, 997
AluBI AGCT 8 cut(s) 127, 167, 584, 721, 956, 1014, 1076, 1160
AluI AGCT 8 cut(s) 127, 167, 584, 721, 956, 1014, 1076, 1160
Alw21I GWGCWC 2 cut(s) 45, 1200
Alw26I GTCTC 2 cut(s) 719, 1094
AlwI GGATC 4 cut(s) 308, 347, 685, 1157
Ama87I CYCGRG 2 cut(s) 260, 716
AoxI GGCC 4 cut(s) 372, 1003, 1117, 1203
ApaI GGGCCC 1 cut(s) 1007
ApeKI GCWGC 3 cut(s) 656, 684, 956
ApoI RAATTY 4 cut(s) 414, 637, 1168, 1267
ArsI GACNNNNNNTTYG 4 cut(s) 101, 133, 140, 172
Asp700I GAANNNNTTC 1 cut(s) 445
AspLEI GCGC 1 cut(s) 506
AspS9I GGNCC 7 cut(s) 242, 331, 372, 769, 923, 1003, 1004
AsuHPI GGTGA 3 cut(s) 571, 793, 1109
AvaI CYCGRG 2 cut(s) 260, 716
AvaII GGWCC 4 cut(s) 242, 331, 769, 923
BaeGI GKGCMC 1 cut(s) 1007
BanII GRGCYC 1 cut(s) 1007
BbrPI CACGTG 1 cut(s) 763
BbsI GAAGAC 2 cut(s) 459, 580
Bbv12I GWGCWC 2 cut(s) 45, 1200
BbvI GCAGC 3 cut(s) 643, 696, 943
BccI CCATC 4 cut(s) 31, 209, 562, 706
BceAI ACGGC 1 cut(s) 1291
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BciT130I CCWGG 4 cut(s) 88, 1042, 1202, 1301
BclI TGATCA 1 cut(s) 186
BcoDI GTCTC 2 cut(s) 719, 1094
BfaI CTAG 1 cut(s) 390
BfmI CTRYAG 1 cut(s) 1244
BfoI RGCGCY 1 cut(s) 507
BisI GCNGC 6 cut(s) 32, 53, 78, 657, 685, 957
BlsI GCNGC 6 cut(s) 33, 54, 79, 658, 686, 958
Bme1390I CCNGG 4 cut(s) 88, 1042, 1202, 1301
Bme18I GGWCC 4 cut(s) 242, 331, 769, 923
BmeRI GACNNNNNGTC 1 cut(s) 929
BmeT110I CYCGRG 2 cut(s) 260, 716
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 7 cut(s) 242, 331, 372, 769, 923, 1003, 1004
BmiI GGNNCC 2 cut(s) 24, 1005
BmrFI CCNGG 4 cut(s) 88, 1042, 1202, 1301
BmsI GCATC 2 cut(s) 968, 1230
BpiI GAAGAC 2 cut(s) 459, 580
Bsa29I ATCGAT 1 cut(s) 831
BsaAI YACGTR 1 cut(s) 763
BsaI GGTCTC 1 cut(s) 719
BsaJI CCNNGG 3 cut(s) 261, 1299, 1300
BsaWI WCCGGW 1 cut(s) 355
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 5 cut(s) 87, 395, 608, 778, 1126
Bse1I ACTGG 1 cut(s) 1146
BseBI CCWGG 4 cut(s) 88, 1042, 1202, 1301
BseCI ATCGAT 1 cut(s) 831
BseDI CCNNGG 3 cut(s) 261, 1299, 1300
BseGI GGATG 1 cut(s) 96
BseLI CCNNNNNNNGG 5 cut(s) 87, 395, 608, 778, 1126
BseMII CTCAG 2 cut(s) 749, 1024
BseNI ACTGG 1 cut(s) 1146
BseRI GAGGAG 2 cut(s) 60, 278
BseSI GKGCMC 1 cut(s) 1007
BseXI GCAGC 3 cut(s) 643, 696, 943
BseYI CCCAGC 1 cut(s) 584
BsgI GTGCAG 1 cut(s) 611
BshFI GGCC 4 cut(s) 374, 1005, 1119, 1205
BshVI ATCGAT 1 cut(s) 831
BsiHKAI GWGCWC 2 cut(s) 45, 1200
BsiHKCI CYCGRG 2 cut(s) 260, 716
BsiSI CCGG 2 cut(s) 356, 602
BslFI GGGAC 1 cut(s) 917
BslI CCNNNNNNNGG 5 cut(s) 87, 395, 608, 778, 1126
BsmAI GTCTC 2 cut(s) 719, 1094
BsmFI GGGAC 1 cut(s) 917
BsmI GAATGC 1 cut(s) 1278
BsnI GGCC 4 cut(s) 374, 1005, 1119, 1205
Bso31I GGTCTC 1 cut(s) 719
BsoBI CYCGRG 2 cut(s) 260, 716
Bsp120I GGGCCC 1 cut(s) 1003
Bsp1286I GDGCHC 3 cut(s) 45, 1007, 1200
Bsp143I GATC 6 cut(s) 186, 250, 313, 352, 677, 1162
BspACI CCGC 8 cut(s) 29, 32, 50, 53, 78, 82, 245, 292
BspANI GGCC 4 cut(s) 374, 1005, 1119, 1205
BspCNI CTCAG 2 cut(s) 748, 1023
BspDI ATCGAT 1 cut(s) 831
BspLI GGNNCC 2 cut(s) 24, 1005
BspPI GGATC 4 cut(s) 308, 347, 685, 1157
BspQI GCTCTTC 1 cut(s) 62
BspTNI GGTCTC 1 cut(s) 719
BsrBI CCGCTC 2 cut(s) 55, 247
BsrI ACTGG 1 cut(s) 1146
BssECI CCNNGG 3 cut(s) 261, 1299, 1300
BssMI GATC 6 cut(s) 186, 250, 313, 352, 677, 1162
Bst2UI CCWGG 4 cut(s) 88, 1042, 1202, 1301
Bst4CI ACNGT 3 cut(s) 235, 1112, 1248
Bst6I CTCTTC 2 cut(s) 62, 341
BstAPI GCANNNNNTGC 1 cut(s) 236
BstBAI YACGTR 1 cut(s) 763
BstC8I GCNNGC 4 cut(s) 82, 129, 296, 969
BstDEI CTNAG 4 cut(s) 735, 1010, 1136, 1292
BstF5I GGATG 1 cut(s) 96
BstH2I RGCGCY 1 cut(s) 507
BstHHI GCGC 1 cut(s) 506
BstKTI GATC 6 cut(s) 189, 253, 316, 355, 680, 1165
BstMAI GTCTC 2 cut(s) 719, 1094
BstMBI GATC 6 cut(s) 186, 250, 313, 352, 677, 1162
BstMWI GCNNNNNNNGC 6 cut(s) 31, 40, 49, 236, 598, 1011
BstNI CCWGG 4 cut(s) 88, 1042, 1202, 1301
BstSCI CCNGG 4 cut(s) 86, 1040, 1200, 1299
BstSFI CTRYAG 1 cut(s) 1244
BstSLI GKGCMC 1 cut(s) 1007
BstV1I GCAGC 3 cut(s) 643, 696, 943
BstV2I GAAGAC 2 cut(s) 459, 580
BstXI CCANNNNNNTGG 1 cut(s) 94
Bsu15I ATCGAT 1 cut(s) 831
BsuRI GGCC 4 cut(s) 374, 1005, 1119, 1205
BsuTUI ATCGAT 1 cut(s) 831
BtgZI GCGATG 3 cut(s) 727, 897, 915
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 1 cut(s) 96
Cac8I GCNNGC 4 cut(s) 82, 129, 296, 969
CfoI GCGC 1 cut(s) 506
Cfr13I GGNCC 7 cut(s) 242, 331, 372, 769, 923, 1003, 1004
ClaI ATCGAT 1 cut(s) 831
Csp6I GTAC 2 cut(s) 887, 905
CviAII CATG 6 cut(s) 190, 328, 514, 552, 985, 1177
CviQI GTAC 2 cut(s) 887, 905
DdeI CTNAG 4 cut(s) 735, 1010, 1136, 1292
DpnI GATC 6 cut(s) 188, 252, 315, 354, 679, 1164
DpnII GATC 6 cut(s) 186, 250, 313, 352, 677, 1162
DraI TTTAAA 1 cut(s) 642
DraIII CACNNNGTG 1 cut(s) 766
DrdI GACNNNNNNGTC 1 cut(s) 215
DriI GACNNNNNGTC 1 cut(s) 929
DseDI GACNNNNNNGTC 1 cut(s) 215
EaeI YGGCCR 1 cut(s) 1203
Eam1104I CTCTTC 2 cut(s) 62, 341
Eam1105I GACNNNNNGTC 1 cut(s) 929
EarI CTCTTC 2 cut(s) 62, 341
EciI GGCGGA 1 cut(s) 39
Eco24I GRGCYC 1 cut(s) 1007
Eco31I GGTCTC 1 cut(s) 719
Eco32I GATATC 1 cut(s) 868
Eco47I GGWCC 4 cut(s) 242, 331, 769, 923
Eco57I CTGAAG 3 cut(s) 215, 471, 1010
Eco72I CACGTG 1 cut(s) 763
Eco88I CYCGRG 2 cut(s) 260, 716
EcoO109I RGGNCCY 2 cut(s) 372, 1004
EcoRII CCWGG 4 cut(s) 86, 1040, 1200, 1299
EcoRV GATATC 1 cut(s) 868
EcoT22I ATGCAT 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 1007
FaeI CATG 6 cut(s) 193, 331, 517, 555, 988, 1180
FalI AAGNNNNNCTT 4 cut(s) 430, 462, 673, 705
FaqI GGGAC 1 cut(s) 917
FatI CATG 6 cut(s) 189, 327, 513, 551, 984, 1176
FauI CCCGC 1 cut(s) 89
FbaI TGATCA 1 cut(s) 186
Fnu4HI GCNGC 6 cut(s) 32, 53, 78, 657, 685, 957
FokI GGATG 1 cut(s) 103
FriOI GRGCYC 1 cut(s) 1007
Fsp4HI GCNGC 6 cut(s) 32, 53, 78, 657, 685, 957
FspBI CTAG 1 cut(s) 390
GlaI GCGC 1 cut(s) 505
GluI GCNGC 6 cut(s) 32, 53, 78, 657, 685, 957
GsaI CCCAGC 1 cut(s) 588
HaeII RGCGCY 1 cut(s) 507
HaeIII GGCC 4 cut(s) 374, 1005, 1119, 1205
HapII CCGG 2 cut(s) 356, 602
HhaI GCGC 1 cut(s) 506
Hin1II CATG 6 cut(s) 193, 331, 517, 555, 988, 1180
Hin6I GCGC 1 cut(s) 504
HinP1I GCGC 1 cut(s) 504
HincII GTYRAC 1 cut(s) 1182
HindII GTYRAC 1 cut(s) 1182
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 5 cut(s) 98, 694, 893, 938, 1132
HpaII CCGG 2 cut(s) 356, 602
HphI GGTGA 3 cut(s) 571, 793, 1109
Hpy166II GTNNAC 1 cut(s) 1182
Hpy188I TCNGA 2 cut(s) 451, 1252
Hpy188III TCNNGA 3 cut(s) 14, 716, 726
Hpy8I GTNNAC 1 cut(s) 1182
Hpy99I CGWCG 5 cut(s) 106, 209, 221, 1021, 1277
HpyAV CCTTC 6 cut(s) 529, 540, 985, 1062, 1130, 1202
HpyCH4III ACNGT 3 cut(s) 235, 1112, 1248
HpyCH4IV ACGT 3 cut(s) 216, 762, 1089
HpyCH4V TGCA 8 cut(s) 230, 239, 284, 364, 592, 659, 850, 959
HpyF10VI GCNNNNNNNGC 6 cut(s) 31, 40, 49, 236, 598, 1011
HpyF3I CTNAG 4 cut(s) 735, 1010, 1136, 1292
HpySE526I ACGT 3 cut(s) 216, 762, 1089
Hsp92II CATG 6 cut(s) 193, 331, 517, 555, 988, 1180
HspAI GCGC 1 cut(s) 504
Ksp22I TGATCA 1 cut(s) 186
Kzo9I GATC 6 cut(s) 186, 250, 313, 352, 677, 1162
LguI GCTCTTC 1 cut(s) 62
LmnI GCTCC 3 cut(s) 22, 404, 1195
Lsp1109I GCAGC 3 cut(s) 643, 696, 943
LweI GCATC 2 cut(s) 968, 1230
MaeI CTAG 1 cut(s) 390
MaeII ACGT 3 cut(s) 216, 762, 1089
MaeIII GTNAC 3 cut(s) 380, 665, 1106
MalI GATC 6 cut(s) 188, 252, 315, 354, 679, 1164
MbiI CCGCTC 2 cut(s) 55, 247
MboI GATC 6 cut(s) 186, 250, 313, 352, 677, 1162
MboII GAAGA 5 cut(s) 49, 328, 464, 585, 809
MfeI CAATTG 1 cut(s) 498
MhlI GDGCHC 3 cut(s) 45, 1007, 1200
MlyI GAGTC 2 cut(s) 107, 703
MmeI TCCRAC 3 cut(s) 75, 793, 1207
MnlI CCTC 9 cut(s) 78, 81, 222, 256, 327, 344, 363, 757, 1017
Mph1103I ATGCAT 1 cut(s) 286
MroXI GAANNNNTTC 1 cut(s) 445
MseI TTAA 3 cut(s) 473, 641, 1035
MslI CAYNNNNRTG 2 cut(s) 89, 326
MspA1I CMGCKG 2 cut(s) 294, 584
MspI CCGG 2 cut(s) 356, 602
MspR9I CCNGG 4 cut(s) 88, 1042, 1202, 1301
MunI CAATTG 1 cut(s) 498
Mva1269I GAATGC 1 cut(s) 1278
MvaI CCWGG 4 cut(s) 88, 1042, 1202, 1301
MwoI GCNNNNNNNGC 6 cut(s) 31, 40, 49, 236, 598, 1011
NdeII GATC 6 cut(s) 186, 250, 313, 352, 677, 1162
NlaIII CATG 6 cut(s) 193, 331, 517, 555, 988, 1180
NlaIV GGNNCC 2 cut(s) 24, 1005
NmeAIII GCCGAG 1 cut(s) 148
NsiI ATGCAT 1 cut(s) 286
PaeR7I CTCGAG 1 cut(s) 716
PasI CCCWGGG 1 cut(s) 1300
PciSI GCTCTTC 1 cut(s) 62
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PctI GAATGC 1 cut(s) 1278
PdmI GAANNNNTTC 1 cut(s) 445
PfeI GAWTC 3 cut(s) 893, 938, 1132
PkrI GCNGC 6 cut(s) 33, 54, 79, 658, 686, 958
PleI GAGTC 2 cut(s) 106, 702
PmaCI CACGTG 1 cut(s) 763
PmlI CACGTG 1 cut(s) 763
PpsI GAGTC 2 cut(s) 106, 702
Ppu21I YACGTR 1 cut(s) 763
Psp6I CCWGG 4 cut(s) 86, 1040, 1200, 1299
PspCI CACGTG 1 cut(s) 763
PspFI CCCAGC 1 cut(s) 584
PspGI CCWGG 4 cut(s) 86, 1040, 1200, 1299
PspN4I GGNNCC 2 cut(s) 24, 1005
PspOMI GGGCCC 1 cut(s) 1003
PspPI GGNCC 7 cut(s) 242, 331, 372, 769, 923, 1003, 1004
PvuII CAGCTG 1 cut(s) 584
RsaI GTAC 2 cut(s) 888, 906
RsaNI GTAC 2 cut(s) 887, 905
RseI CAYNNNNRTG 2 cut(s) 89, 326
SapI GCTCTTC 1 cut(s) 62
SaqAI TTAA 3 cut(s) 473, 641, 1035
SatI GCNGC 6 cut(s) 32, 53, 78, 657, 685, 957
Sau3AI GATC 6 cut(s) 186, 250, 313, 352, 677, 1162
Sau96I GGNCC 7 cut(s) 242, 331, 372, 769, 923, 1003, 1004
SchI GAGTC 2 cut(s) 107, 703
ScrFI CCNGG 4 cut(s) 88, 1042, 1202, 1301
SduI GDGCHC 3 cut(s) 45, 1007, 1200
SfaNI GCATC 2 cut(s) 968, 1230
SfcI CTRYAG 1 cut(s) 1244
Sfr274I CTCGAG 1 cut(s) 716
SinI GGWCC 4 cut(s) 242, 331, 769, 923
SlaI CTCGAG 1 cut(s) 716
SmiMI CAYNNNNRTG 2 cut(s) 89, 326
SmlI CTYRAG 1 cut(s) 716
SmoI CTYRAG 1 cut(s) 716
SsiI CCGC 8 cut(s) 29, 32, 50, 53, 78, 82, 245, 292
SspMI CTAG 1 cut(s) 390
StyD4I CCNGG 4 cut(s) 86, 1040, 1200, 1299
TaaI ACNGT 3 cut(s) 235, 1112, 1248
TaiI ACGT 3 cut(s) 219, 765, 1092
TaqI TCGA 8 cut(s) 60, 204, 219, 249, 717, 831, 1019, 1272
TaqII GACCGA 1 cut(s) 1252
TauI GCSGC 3 cut(s) 34, 55, 80
TfiI GAWTC 3 cut(s) 893, 938, 1132
Tru1I TTAA 3 cut(s) 473, 641, 1035
Tru9I TTAA 3 cut(s) 473, 641, 1035
TseI GCWGC 3 cut(s) 656, 684, 956
TspDTI ATGAA 4 cut(s) 316, 730, 819, 973
TspGWI ACGGA 1 cut(s) 684
VpaK11BI GGWCC 4 cut(s) 242, 331, 769, 923
XapI RAATTY 4 cut(s) 414, 637, 1168, 1267
XcmI CCANNNNNNNNNTGG 1 cut(s) 549
XhoI CTCGAG 1 cut(s) 716
XmnI GAANNNNTTC 1 cut(s) 445
XspI CTAG 1 cut(s) 390
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.