DNA repair protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G28030 AT3G28030 AT3G28030 AT3G28030 |
| fragaria_vesca | FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 |
| malus_domestica | MD17G1038000.v1.1 |
| prunus_persica | Prupe.3G281300_v2.0.a1 Prupe.3G281300_v2.0.a1 Prupe.3G281300_v2.0.a1 Prupe.3G281300_v2.0.a1 Prupe.3G281300_v2.0.a1 |
| pyrus_communis | pycom17g03420 |
| rosa_chinensis | RchiOBHm_Chr2g0170851 |
| rosa_laevigata | RLG00000021986 |
| rosa_multiflora | Rmu_co8355801.1_g000001 Rmu_sc0009938.1_g000007 Rmu_sc0032006.1_g000001 Rmu_sc0035429.1_g000001 Rmu_sc0042424.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00081030 |
| rosa_rugosa | Rorug02G0551800 |
| rosa_samantha | Rh2AG624500 Rh2BG635100 Rh2CG603900 Rh2DG646700 |
| rosa_wichuraiana | Rw2G051730 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 440 |
| AarI | CACCTGC | 1 cut(s) | 2086 |
| Acc16I | TGCGCA | 1 cut(s) | 4130 |
| Acc36I | ACCTGC | 3 cut(s) | 96, 2086, 4122 |
| AccB1I | GGYRCC | 1 cut(s) | 1879 |
| AccI | GTMKAC | 2 cut(s) | 1244, 2833 |
| AccII | CGCG | 4 cut(s) | 44, 1032, 1498, 3600 |
| AclWI | GGATC | 9 cut(s) | 521, 854, 1270, 2080, 2745, 3104, 3179, 3229, 4424 |
| AcuI | CTGAAG | 8 cut(s) | 1884, 2511, 3102, 3693, 3918, 3954, 4476, 4536 |
| AcyI | GRCGYC | 1 cut(s) | 4141 |
| AdeI | CACNNNGTG | 2 cut(s) | 1607, 2951 |
| AfaI | GTAC | 7 cut(s) | 86, 1047, 1158, 2185, 2374, 3590, 3772 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 421, 3198, 3486, 4340, 4652, 4796 |
| AflII | CTTAAG | 3 cut(s) | 227, 3833, 4466 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 4649 |
| AjnI | CCWGG | 6 cut(s) | 378, 414, 1576, 1882, 1960, 4408 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 4509, 4541 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 167, 199, 4515, 4547 |
| Alw21I | GWGCWC | 3 cut(s) | 2634, 3327, 4804 |
| Alw26I | GTCTC | 9 cut(s) | 9, 679, 1301, 2984, 3596, 4232, 4335, 4496, 4706 |
| AlwI | GGATC | 9 cut(s) | 521, 854, 1270, 2080, 2745, 3104, 3179, 3229, 4424 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2693 |
| Ama87I | CYCGRG | 2 cut(s) | 2408, 4260 |
| AoxI | GGCC | 6 cut(s) | 129, 417, 1327, 3025, 3148, 4342 |
| ApeKI | GCWGC | 8 cut(s) | 404, 464, 716, 875, 991, 1055, 3728, 4786 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3295, 3327 |
| AseI | ATTAAT | 2 cut(s) | 1893, 3044 |
| AspLEI | GCGC | 4 cut(s) | 46, 141, 730, 4131 |
| AsuC2I | CCSGG | 2 cut(s) | 128, 3164 |
| AsuII | TTCGAA | 1 cut(s) | 1998 |
| AsuNHI | GCTAGC | 1 cut(s) | 3545 |
| AvaI | CYCGRG | 2 cut(s) | 2408, 4260 |
| AvaII | GGWCC | 7 cut(s) | 34, 93, 970, 2344, 3891, 4090, 4744 |
| AxyI | CCTNAGG | 2 cut(s) | 3138, 4823 |
| BaeGI | GKGCMC | 1 cut(s) | 2947 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 732, 765, 935, 968 |
| BanI | GGYRCC | 1 cut(s) | 1879 |
| BanII | GRGCYC | 3 cut(s) | 2163, 3480, 4804 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 483, 515, 3061, 3093 |
| BbsI | GAAGAC | 4 cut(s) | 169, 357, 1686, 4464 |
| Bbv12I | GWGCWC | 3 cut(s) | 2634, 3327, 4804 |
| BbvCI | CCTCAGC | 2 cut(s) | 468, 4446 |
| BbvI | GCAGC | 8 cut(s) | 416, 451, 703, 862, 978, 1042, 3715, 4798 |
| BceAI | ACGGC | 1 cut(s) | 133 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1562, 1596 |
| BciT130I | CCWGG | 6 cut(s) | 380, 416, 1578, 1884, 1962, 4410 |
| BciVI | GTATCC | 1 cut(s) | 733 |
| BclI | TGATCA | 4 cut(s) | 1711, 2359, 2479, 4732 |
| BcnI | CCSGG | 2 cut(s) | 128, 3164 |
| BcoDI | GTCTC | 9 cut(s) | 9, 679, 1301, 2984, 3596, 4232, 4335, 4496, 4706 |
| BfaI | CTAG | 8 cut(s) | 543, 1452, 2010, 2720, 3197, 3225, 3546, 4205 |
| BfmI | CTRYAG | 3 cut(s) | 1017, 1662, 4719 |
| BfoI | RGCGCY | 1 cut(s) | 142 |
| BfrI | CTTAAG | 3 cut(s) | 227, 3833, 4466 |
| BfuAI | ACCTGC | 3 cut(s) | 96, 2086, 4122 |
| BfuI | GTATCC | 1 cut(s) | 733 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2690 |
| BisI | GCNGC | 9 cut(s) | 405, 465, 717, 876, 992, 1056, 3614, 3729, 4787 |
| BlpI | GCTNAGC | 1 cut(s) | 3870 |
| BlsI | GCNGC | 9 cut(s) | 406, 466, 718, 877, 993, 1057, 3615, 3730, 4788 |
| BmcAI | AGTACT | 2 cut(s) | 1158, 3772 |
| Bme1390I | CCNGG | 8 cut(s) | 128, 380, 416, 1578, 1884, 1962, 3164, 4410 |
| Bme18I | GGWCC | 7 cut(s) | 34, 93, 970, 2344, 3891, 4090, 4744 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 4649 |
| BmeT110I | CYCGRG | 2 cut(s) | 2408, 4260 |
| BmiI | GGNNCC | 4 cut(s) | 124, 972, 1328, 1881 |
| BmrFI | CCNGG | 8 cut(s) | 128, 380, 416, 1578, 1884, 1962, 3164, 4410 |
| BmrI | ACTGGG | 3 cut(s) | 175, 1822, 2863 |
| BmtI | GCTAGC | 1 cut(s) | 3549 |
| BmuI | ACTGGG | 3 cut(s) | 175, 1822, 2863 |
| BpiI | GAAGAC | 4 cut(s) | 169, 357, 1686, 4464 |
| BpmI | CTGGAG | 4 cut(s) | 1254, 1578, 2235, 4815 |
| Bpu10I | CCTNAGC | 4 cut(s) | 468, 606, 3029, 4446 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3870 |
| Bpu14I | TTCGAA | 1 cut(s) | 1998 |
| BpuEI | CTTGAG | 4 cut(s) | 119, 661, 2060, 2639 |
| BpuMI | CCSGG | 2 cut(s) | 128, 3164 |
| BsaAI | YACGTR | 1 cut(s) | 2675 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1710 |
| BsaHI | GRCGYC | 1 cut(s) | 4141 |
| BsaJI | CCNNGG | 3 cut(s) | 126, 420, 2380 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 18, 48 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 421, 3198, 3486, 4340, 4652, 4796 |
| Bse118I | RCCGGY | 1 cut(s) | 100 |
| Bse21I | CCTNAGG | 2 cut(s) | 3138, 4823 |
| Bse3DI | GCAATG | 7 cut(s) | 15, 878, 2102, 2312, 4069, 4754, 4818 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1710 |
| BseBI | CCWGG | 6 cut(s) | 380, 416, 1578, 1884, 1962, 4410 |
| BseDI | CCNNGG | 3 cut(s) | 126, 420, 2380 |
| BseJI | GATNNNNATC | 1 cut(s) | 1710 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 421, 3198, 3486, 4340, 4652, 4796 |
| BseMI | GCAATG | 7 cut(s) | 15, 878, 2102, 2312, 4069, 4754, 4818 |
| BseRI | GAGGAG | 7 cut(s) | 1588, 2121, 2238, 2313, 2717, 3155, 4812 |
| BseSI | GKGCMC | 1 cut(s) | 2947 |
| BseXI | GCAGC | 8 cut(s) | 416, 451, 703, 862, 978, 1042, 3715, 4798 |
| BseYI | CCCAGC | 2 cut(s) | 3540, 3782 |
| BsgI | GTGCAG | 3 cut(s) | 825, 1103, 3714 |
| Bsh1236I | CGCG | 4 cut(s) | 44, 1032, 1498, 3600 |
| BshFI | GGCC | 6 cut(s) | 131, 419, 1329, 3027, 3150, 4344 |
| BshNI | GGYRCC | 1 cut(s) | 1879 |
| BsiHKAI | GWGCWC | 3 cut(s) | 2634, 3327, 4804 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2408, 4260 |
| BsiSI | CCGG | 5 cut(s) | 101, 128, 142, 3163, 4760 |
| BslFI | GGGAC | 3 cut(s) | 806, 2654, 3214 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 421, 3198, 3486, 4340, 4652, 4796 |
| BsmAI | GTCTC | 9 cut(s) | 9, 679, 1301, 2984, 3596, 4232, 4335, 4496, 4706 |
| BsmBI | CGTCTC | 1 cut(s) | 9 |
| BsmFI | GGGAC | 3 cut(s) | 806, 2654, 3214 |
| BsmI | GAATGC | 3 cut(s) | 451, 1783, 2674 |
| BsnI | GGCC | 6 cut(s) | 131, 419, 1329, 3027, 3150, 4344 |
| BsoBI | CYCGRG | 2 cut(s) | 2408, 4260 |
| Bsp119I | TTCGAA | 1 cut(s) | 1998 |
| Bsp1286I | GDGCHC | 6 cut(s) | 2163, 2634, 2947, 3327, 3480, 4804 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3870 |
| Bsp19I | CCATGG | 1 cut(s) | 2380 |
| Bsp68I | TCGCGA | 1 cut(s) | 1032 |
| BspANI | GGCC | 6 cut(s) | 131, 419, 1329, 3027, 3150, 4344 |
| BspFNI | CGCG | 4 cut(s) | 44, 1032, 1498, 3600 |
| BspHI | TCATGA | 4 cut(s) | 1714, 2605, 3000, 4708 |
| BspLI | GGNNCC | 4 cut(s) | 124, 972, 1328, 1881 |
| BspMI | ACCTGC | 3 cut(s) | 96, 2086, 4122 |
| BspOI | GCTAGC | 1 cut(s) | 3549 |
| BspPI | GGATC | 9 cut(s) | 521, 854, 1270, 2080, 2745, 3104, 3179, 3229, 4424 |
| BspQI | GCTCTTC | 2 cut(s) | 3269, 3894 |
| BspT104I | TTCGAA | 1 cut(s) | 1998 |
| BspT107I | GGYRCC | 1 cut(s) | 1879 |
| BspTI | CTTAAG | 3 cut(s) | 227, 3833, 4466 |
| BsrDI | GCAATG | 7 cut(s) | 15, 878, 2102, 2312, 4069, 4754, 4818 |
| BsrFI | RCCGGY | 1 cut(s) | 100 |
| BssAI | RCCGGY | 1 cut(s) | 100 |
| BssECI | CCNNGG | 3 cut(s) | 126, 420, 2380 |
| BssNAI | GTATAC | 1 cut(s) | 2834 |
| BssNI | GRCGYC | 1 cut(s) | 4141 |
| BssT1I | CCWWGG | 1 cut(s) | 2380 |
| Bst1107I | GTATAC | 1 cut(s) | 2834 |
| Bst2UI | CCWGG | 6 cut(s) | 380, 416, 1578, 1884, 1962, 4410 |
| Bst6I | CTCTTC | 7 cut(s) | 486, 819, 1998, 3269, 3752, 3894, 3982 |
| BstACI | GRCGYC | 1 cut(s) | 4141 |
| BstAFI | CTTAAG | 3 cut(s) | 227, 3833, 4466 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 725 |
| BstBAI | YACGTR | 1 cut(s) | 2675 |
| BstBI | TTCGAA | 1 cut(s) | 1998 |
| BstC8I | GCNNGC | 8 cut(s) | 77, 365, 840, 3547, 3906, 3930, 3966, 4346 |
| BstDSI | CCRYGG | 1 cut(s) | 2380 |
| BstFNI | CGCG | 4 cut(s) | 44, 1032, 1498, 3600 |
| BstH2I | RGCGCY | 1 cut(s) | 142 |
| BstHHI | GCGC | 4 cut(s) | 46, 141, 730, 4131 |
| BstMAI | GTCTC | 9 cut(s) | 9, 679, 1301, 2984, 3596, 4232, 4335, 4496, 4706 |
| BstNI | CCWGG | 6 cut(s) | 380, 416, 1578, 1884, 1962, 4410 |
| BstNSI | RCATGY | 1 cut(s) | 3968 |
| BstSCI | CCNGG | 8 cut(s) | 126, 378, 414, 1576, 1882, 1960, 3162, 4408 |
| BstSFI | CTRYAG | 3 cut(s) | 1017, 1662, 4719 |
| BstSLI | GKGCMC | 1 cut(s) | 2947 |
| BstUI | CGCG | 4 cut(s) | 44, 1032, 1498, 3600 |
| BstV1I | GCAGC | 8 cut(s) | 416, 451, 703, 862, 978, 1042, 3715, 4798 |
| BstV2I | GAAGAC | 4 cut(s) | 169, 357, 1686, 4464 |
| BstX2I | RGATCY | 3 cut(s) | 2737, 3184, 3221 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2387 |
| BstYI | RGATCY | 3 cut(s) | 2737, 3184, 3221 |
| BstZ17I | GTATAC | 1 cut(s) | 2834 |
| Bsu36I | CCTNAGG | 2 cut(s) | 3138, 4823 |
| BsuI | GTATCC | 1 cut(s) | 733 |
| BsuRI | GGCC | 6 cut(s) | 131, 419, 1329, 3027, 3150, 4344 |
| BtgI | CCRYGG | 1 cut(s) | 2380 |
| BtgZI | GCGATG | 2 cut(s) | 248, 828 |
| BtsI | GCAGTG | 3 cut(s) | 842, 2794, 3438 |
| BtsIMutI | CAGTG | 7 cut(s) | 842, 1240, 1909, 2794, 2876, 3438, 3894 |
| BtuMI | TCGCGA | 1 cut(s) | 1032 |
| BveI | ACCTGC | 3 cut(s) | 96, 2086, 4122 |
| Cac8I | GCNNGC | 8 cut(s) | 77, 365, 840, 3547, 3906, 3930, 3966, 4346 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2693 |
| CciI | TCATGA | 4 cut(s) | 1714, 2605, 3000, 4708 |
| CfoI | GCGC | 4 cut(s) | 46, 141, 730, 4131 |
| Cfr10I | RCCGGY | 1 cut(s) | 100 |
| CseI | GACGC | 4 cut(s) | 677, 750, 4130, 4740 |
| CsiI | ACCWGGT | 1 cut(s) | 4408 |
| Csp6I | GTAC | 7 cut(s) | 85, 1046, 1157, 2184, 2373, 3589, 3771 |
| CviQI | GTAC | 7 cut(s) | 85, 1046, 1157, 2184, 2373, 3589, 3771 |
| DraIII | CACNNNGTG | 2 cut(s) | 1607, 2951 |
| DriI | GACNNNNNGTC | 1 cut(s) | 4649 |
| Eam1104I | CTCTTC | 7 cut(s) | 486, 819, 1998, 3269, 3752, 3894, 3982 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 4649 |
| EarI | CTCTTC | 7 cut(s) | 486, 819, 1998, 3269, 3752, 3894, 3982 |
| EciI | GGCGGA | 3 cut(s) | 53, 135, 950 |
| Ecl136II | GAGCTC | 1 cut(s) | 4802 |
| Eco130I | CCWWGG | 1 cut(s) | 2380 |
| Eco24I | GRGCYC | 3 cut(s) | 2163, 3480, 4804 |
| Eco32I | GATATC | 2 cut(s) | 262, 3265 |
| Eco47I | GGWCC | 7 cut(s) | 34, 93, 970, 2344, 3891, 4090, 4744 |
| Eco53kI | GAGCTC | 1 cut(s) | 4802 |
| Eco57I | CTGAAG | 8 cut(s) | 1884, 2511, 3102, 3693, 3918, 3954, 4476, 4536 |
| Eco81I | CCTNAGG | 2 cut(s) | 3138, 4823 |
| Eco88I | CYCGRG | 2 cut(s) | 2408, 4260 |
| EcoICRI | GAGCTC | 1 cut(s) | 4802 |
| EcoO109I | RGGNCCY | 1 cut(s) | 970 |
| EcoRI | GAATTC | 2 cut(s) | 4524, 4558 |
| EcoRII | CCWGG | 6 cut(s) | 378, 414, 1576, 1882, 1960, 4408 |
| EcoRV | GATATC | 2 cut(s) | 262, 3265 |
| EcoT14I | CCWWGG | 1 cut(s) | 2380 |
| EcoT22I | ATGCAT | 2 cut(s) | 451, 3133 |
| EcoT38I | GRGCYC | 3 cut(s) | 2163, 3480, 4804 |
| ErhI | CCWWGG | 1 cut(s) | 2380 |
| Esp3I | CGTCTC | 1 cut(s) | 9 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 2222, 2254, 4344, 4376, 4449, 4481 |
| FaqI | GGGAC | 3 cut(s) | 806, 2654, 3214 |
| FauI | CCCGC | 1 cut(s) | 162 |
| FbaI | TGATCA | 4 cut(s) | 1711, 2359, 2479, 4732 |
| FblI | GTMKAC | 2 cut(s) | 1244, 2833 |
| Fnu4HI | GCNGC | 9 cut(s) | 405, 465, 717, 876, 992, 1056, 3614, 3729, 4787 |
| FriOI | GRGCYC | 3 cut(s) | 2163, 3480, 4804 |
| Fsp4HI | GCNGC | 9 cut(s) | 405, 465, 717, 876, 992, 1056, 3614, 3729, 4787 |
| FspBI | CTAG | 8 cut(s) | 543, 1452, 2010, 2720, 3197, 3225, 3546, 4205 |
| FspI | TGCGCA | 1 cut(s) | 4130 |
| GlaI | GCGC | 4 cut(s) | 45, 140, 729, 4130 |
| GluI | GCNGC | 9 cut(s) | 405, 465, 717, 876, 992, 1056, 3614, 3729, 4787 |
| GsaI | CCCAGC | 2 cut(s) | 3544, 3786 |
| GsuI | CTGGAG | 4 cut(s) | 1254, 1578, 2235, 4815 |
| HaeII | RGCGCY | 1 cut(s) | 142 |
| HaeIII | GGCC | 6 cut(s) | 131, 419, 1329, 3027, 3150, 4344 |
| HapII | CCGG | 5 cut(s) | 101, 128, 142, 3163, 4760 |
| HgaI | GACGC | 4 cut(s) | 677, 750, 4130, 4740 |
| HhaI | GCGC | 4 cut(s) | 46, 141, 730, 4131 |
| Hin1I | GRCGYC | 1 cut(s) | 4141 |
| Hin6I | GCGC | 4 cut(s) | 44, 139, 728, 4129 |
| HinP1I | GCGC | 4 cut(s) | 44, 139, 728, 4129 |
| HincII | GTYRAC | 3 cut(s) | 765, 1594, 4591 |
| HindII | GTYRAC | 3 cut(s) | 765, 1594, 4591 |
| HindIII | AAGCTT | 2 cut(s) | 188, 3621 |
| HpaII | CCGG | 5 cut(s) | 101, 128, 142, 3163, 4760 |
| Hpy99I | CGWCG | 2 cut(s) | 671, 1032 |
| HpyCH4IV | ACGT | 5 cut(s) | 2674, 2767, 3203, 4182, 4593 |
| HpySE526I | ACGT | 5 cut(s) | 2674, 2767, 3203, 4182, 4593 |
| Hsp92I | GRCGYC | 1 cut(s) | 4141 |
| HspAI | GCGC | 4 cut(s) | 44, 139, 728, 4129 |
| Ksp22I | TGATCA | 4 cut(s) | 1711, 2359, 2479, 4732 |
| LguI | GCTCTTC | 2 cut(s) | 3269, 3894 |
| LmnI | GCTCC | 5 cut(s) | 1273, 2812, 3913, 4232, 4799 |
| Lsp1109I | GCAGC | 8 cut(s) | 416, 451, 703, 862, 978, 1042, 3715, 4798 |
| MabI | ACCWGGT | 1 cut(s) | 4408 |
| MaeI | CTAG | 8 cut(s) | 543, 1452, 2010, 2720, 3197, 3225, 3546, 4205 |
| MaeII | ACGT | 5 cut(s) | 2674, 2767, 3203, 4182, 4593 |
| MaeIII | GTNAC | 9 cut(s) | 748, 1513, 1750, 2054, 2207, 2911, 3311, 3433, 4724 |
| MfeI | CAATTG | 1 cut(s) | 1428 |
| MflI | RGATCY | 3 cut(s) | 2737, 3184, 3221 |
| MhlI | GDGCHC | 6 cut(s) | 2163, 2634, 2947, 3327, 3480, 4804 |
| MmeI | TCCRAC | 1 cut(s) | 4633 |
| Mph1103I | ATGCAT | 2 cut(s) | 451, 3133 |
| MslI | CAYNNNNRTG | 4 cut(s) | 2121, 2385, 3969, 4215 |
| MspA1I | CMGCKG | 4 cut(s) | 169, 533, 866, 3338 |
| MspCI | CTTAAG | 3 cut(s) | 227, 3833, 4466 |
| MspI | CCGG | 5 cut(s) | 101, 128, 142, 3163, 4760 |
| MspR9I | CCNGG | 8 cut(s) | 128, 380, 416, 1578, 1884, 1962, 3164, 4410 |
| MunI | CAATTG | 1 cut(s) | 1428 |
| Mva1269I | GAATGC | 3 cut(s) | 451, 1783, 2674 |
| MvaI | CCWGG | 6 cut(s) | 380, 416, 1578, 1884, 1962, 4410 |
| MvnI | CGCG | 4 cut(s) | 44, 1032, 1498, 3600 |
| NciI | CCSGG | 2 cut(s) | 128, 3164 |
| NcoI | CCATGG | 1 cut(s) | 2380 |
| NheI | GCTAGC | 1 cut(s) | 3545 |
| NlaIV | GGNNCC | 4 cut(s) | 124, 972, 1328, 1881 |
| NmeAIII | GCCGAG | 5 cut(s) | 33, 229, 316, 445, 4762 |
| NmuCI | GTSAC | 5 cut(s) | 1513, 2054, 2207, 3311, 3433 |
| NruI | TCGCGA | 1 cut(s) | 1032 |
| NsbI | TGCGCA | 1 cut(s) | 4130 |
| NsiI | ATGCAT | 2 cut(s) | 451, 3133 |
| NspI | RCATGY | 1 cut(s) | 3968 |
| NspV | TTCGAA | 1 cut(s) | 1998 |
| PaeI | GCATGC | 1 cut(s) | 3968 |
| PagI | TCATGA | 4 cut(s) | 1714, 2605, 3000, 4708 |
| PaqCI | CACCTGC | 1 cut(s) | 2086 |
| PciSI | GCTCTTC | 2 cut(s) | 3269, 3894 |
| PctI | GAATGC | 3 cut(s) | 451, 1783, 2674 |
| PfeI | GAWTC | 7 cut(s) | 1277, 1544, 2198, 2777, 3176, 3669, 3848 |
| PflFI | GACNNNGTC | 1 cut(s) | 671 |
| PfoI | TCCNGGA | 1 cut(s) | 3162 |
| PkrI | GCNGC | 9 cut(s) | 406, 466, 718, 877, 993, 1057, 3615, 3730, 4788 |
| Ppu21I | YACGTR | 1 cut(s) | 2675 |
| PpuMI | RGGWCCY | 1 cut(s) | 970 |
| PshBI | ATTAAT | 2 cut(s) | 1893, 3044 |
| PsiI | TTATAA | 1 cut(s) | 440 |
| Psp124BI | GAGCTC | 1 cut(s) | 4804 |
| Psp5II | RGGWCCY | 1 cut(s) | 970 |
| Psp6I | CCWGG | 6 cut(s) | 378, 414, 1576, 1882, 1960, 4408 |
| PspFI | CCCAGC | 2 cut(s) | 3540, 3782 |
| PspGI | CCWGG | 6 cut(s) | 378, 414, 1576, 1882, 1960, 4408 |
| PspN4I | GGNNCC | 4 cut(s) | 124, 972, 1328, 1881 |
| PspPPI | RGGWCCY | 1 cut(s) | 970 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3754, 3786 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2693 |
| PsuI | RGATCY | 3 cut(s) | 2737, 3184, 3221 |
| PsyI | GACNNNGTC | 1 cut(s) | 671 |
| PvuII | CAGCTG | 3 cut(s) | 533, 866, 3338 |
| RruI | TCGCGA | 1 cut(s) | 1032 |
| RsaI | GTAC | 7 cut(s) | 86, 1047, 1158, 2185, 2374, 3590, 3772 |
| RsaNI | GTAC | 7 cut(s) | 85, 1046, 1157, 2184, 2373, 3589, 3771 |
| RseI | CAYNNNNRTG | 4 cut(s) | 2121, 2385, 3969, 4215 |
| SacI | GAGCTC | 1 cut(s) | 4804 |
| SapI | GCTCTTC | 2 cut(s) | 3269, 3894 |
| SatI | GCNGC | 9 cut(s) | 405, 465, 717, 876, 992, 1056, 3614, 3729, 4787 |
| ScaI | AGTACT | 2 cut(s) | 1158, 3772 |
| ScrFI | CCNGG | 8 cut(s) | 128, 380, 416, 1578, 1884, 1962, 3164, 4410 |
| SduI | GDGCHC | 6 cut(s) | 2163, 2634, 2947, 3327, 3480, 4804 |
| SexAI | ACCWGGT | 1 cut(s) | 4408 |
| SfcI | CTRYAG | 3 cut(s) | 1017, 1662, 4719 |
| SfuI | TTCGAA | 1 cut(s) | 1998 |
| SinI | GGWCC | 7 cut(s) | 34, 93, 970, 2344, 3891, 4090, 4744 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 2121, 2385, 3969, 4215 |
| SmlI | CTYRAG | 7 cut(s) | 134, 227, 676, 2039, 2654, 3833, 4466 |
| SmoI | CTYRAG | 7 cut(s) | 134, 227, 676, 2039, 2654, 3833, 4466 |
| SphI | GCATGC | 1 cut(s) | 3968 |
| SspMI | CTAG | 8 cut(s) | 543, 1452, 2010, 2720, 3197, 3225, 3546, 4205 |
| SstI | GAGCTC | 1 cut(s) | 4804 |
| StyD4I | CCNGG | 8 cut(s) | 126, 378, 414, 1576, 1882, 1960, 3162, 4408 |
| StyI | CCWWGG | 1 cut(s) | 2380 |
| TaiI | ACGT | 5 cut(s) | 2677, 2770, 3206, 4185, 4596 |
| TaqI | TCGA | 7 cut(s) | 666, 1336, 1582, 1998, 2970, 4170, 4440 |
| TatI | WGTACW | 4 cut(s) | 1045, 1156, 3588, 3770 |
| TauI | GCSGC | 1 cut(s) | 3616 |
| TfiI | GAWTC | 7 cut(s) | 1277, 1544, 2198, 2777, 3176, 3669, 3848 |
| TscAI | CASTG | 7 cut(s) | 849, 1240, 1909, 2794, 2876, 3438, 3901 |
| TseFI | GTSAC | 5 cut(s) | 1513, 2054, 2207, 3311, 3433 |
| TseI | GCWGC | 8 cut(s) | 404, 464, 716, 875, 991, 1055, 3728, 4786 |
| Tsp45I | GTSAC | 5 cut(s) | 1513, 2054, 2207, 3311, 3433 |
| TspGWI | ACGGA | 3 cut(s) | 2044, 2316, 3330 |
| TspRI | CASTG | 7 cut(s) | 849, 1240, 1909, 2794, 2876, 3438, 3901 |
| Tth111I | GACNNNGTC | 1 cut(s) | 671 |
| Vha464I | CTTAAG | 3 cut(s) | 227, 3833, 4466 |
| VpaK11BI | GGWCC | 7 cut(s) | 34, 93, 970, 2344, 3891, 4090, 4744 |
| VspI | ATTAAT | 2 cut(s) | 1893, 3044 |
| XbaI | TCTAGA | 1 cut(s) | 2719 |
| XceI | RCATGY | 1 cut(s) | 3968 |
| XmiI | GTMKAC | 2 cut(s) | 1244, 2833 |
| XspI | CTAG | 8 cut(s) | 543, 1452, 2010, 2720, 3197, 3225, 3546, 4205 |
| ZrmI | AGTACT | 2 cut(s) | 1158, 3772 |
| Zsp2I | ATGCAT | 2 cut(s) | 451, 3133 |