pycom17g03870

Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0013704
Physical Location & Seq
Reverse (-)
2645831 .. 2648420
2590 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1557 bp
ATGTTTTCTCTCCTTTGTTTGCCGCCGGATCTGTATTTTCCCTCGGCTTCTTGTGCTTGTCTGTTTCTACGCTTTCAAATCCTTGCGAATACGGGTTACACGATGATCTTACAGCTAAATCCGCGTTTTGTTTTCGTGTCCAGAGCAATGCGACTTGAAGCCGCCATGGTAGGAGGGGAACAGCTTTCATCTGATCAGCTAGGTGCAGGAACAGCTTGCATGGACAACGAAAGACGGGATAATGGGGGTAAAGATGAAAGCGGAGATTACTTGGATGATATTCTCTTTCAGTCCATGGAGATGGATCCACGCACGTCAACTGGCGAGCTGAGGTCTCCAGTAGGGAGCTTGGCAGTAGATTTGGATGAGTGGCTGAATCTTAAGGATGATGCGGCAGACATGTATGTTCTCGGATTTCAGGAGATCGTACCTTTGAAGGCCCGAAATGTGATAGGAGCGGAAGACCCAACCGAAGCAAGAAACTGGAACCTGCTGATAGGAAAAGCTCTCAACAAAAAACTCGGTTGCCCTTGGTTGACGCCCATTGTGAATCCAATTTCAAGTGAGAACTACCACTACATGCAAGTTTCTGAACCCGAACCTGAAATCACGAGAGAGCAATCAAGAACCGAACATGAAAAGCCAGAGAGTGTGAGTAAGTACAAGCTGATGGCAAGCAAGAAGATGGTTGGAGTCTTCATTACTGTATGGATGAAAAGTGAATTGGTCAAAAAATATAAAATTTCAAATGTTAAAGTTTGTTCCGTGGCCTGCGGCATCATGGGTTATTTGGGAAACAAAGGCTCAGTTTCAGTTAGCATGACGATTGAAGGAACTAGATTTTGCTTCGTTGTAGCCCATCTAGCTTCTGGTGAGAAGAAAGGAGATGAAGGCAGAAGGAATCATCAAGTCACAGAGATTTTCAAGCGAACTTCTTTCCCTCGATCCCCTTTAGACAACGATATTCCTCATCCTCTCACCATCTTAGGACACGATCAGATTTTTTGGTTCGGGGATCTAAACTATAGGCTATACTTGGAGGACAATTCAGCCAGGCAGCTGATAAGGAAACTAGACTGGAGAGCGTTGCAAGAGTTTGATCAGCTTCGTATGGAACGAGAATATGGTGGGGTATTTCAGGGTTGGATGGAGGGAGCTTTAGAATTTGCACCAACCTATAAGTATTCTTCATCAAACTGCAATCGCTATTCAGGTGGGCTTCCAAGCAGATCAGGAGAGAAGCAAAGGACTCCAGCATGGTGCGATAGAATTATGTGGTACGGAAAAGGAGTGACGCAGCTCTCTTATTTCCGTAGTGAAAGTAAGTTCTCTGACCATCGCCCTGTCTCTGCCCTATTCTCAACACAGGTAGACGTACTGCAATCTACTAATCCAAGAATGGTTTCAATGCATACCATTCTTCCCGTCATACCAACTCTTAAAGAAATAGTAAGTTCTAACAGTGTACAGAGAGACCGTGACGAAGAGGCCAGGTCTACATTATTATCAATGATCTTAAAGGATATAGAAGAATCACCAACAGGAAATGCAAGTTGA

Protein Analysis

519

Amino Acids

58.54

Weight (kDa)

6.01

Isoelectric Point (pI)

50.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos2 PF22669 120 - 451 1.5e-62 Endonuclease/Exonuclease/phosphatase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013704)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g49730 FvH4_6g49730 FvH4_6g49730
malus_domestica MD09G1042100.v1.1 MD17G1043400.v1.1
prunus_persica Prupe.3G275700_v2.0.a1 Prupe.3G275700_v2.0.a1
pyrus_communis pycom111g03300 pycom17g03870
rosa_chinensis RchiOBHm_Chr2g0169761
rosa_laevigata RLG00000021900
rosa_multiflora Rmu_ssc0000389.1_g000029
rosa_roxburghii Rroxscaffold_2G00081810
rosa_rugosa Rorug02G0542900 Rorug02G0543000
rosa_samantha Rh2AG615000 Rh2DG638100
rosa_wichuraiana Rw2G050990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 498
AccBSI CCGCTC 1 cut(s) 458
AccI GTMKAC 2 cut(s) 1371, 1496
AccII CGCG 1 cut(s) 124
AciI CCGC 7 cut(s) 23, 122, 162, 261, 392, 458, 774
AclWI GGATC 5 cut(s) 36, 299, 312, 939, 1023
AcsI RAATTY 2 cut(s) 741, 1163
AcyI GRCGYC 1 cut(s) 539
AfaI GTAC 5 cut(s) 429, 662, 1280, 1377, 1467
AflII CTTAAG 1 cut(s) 380
AflIII ACRYGT 1 cut(s) 399
AgsI TTSAA 8 cut(s) 77, 158, 436, 561, 747, 830, 925, 1407
AjiI CACGTC 1 cut(s) 315
AjnI CCWGG 2 cut(s) 1052, 1490
AjuI GAANNNNNNNTTGG 4 cut(s) 707, 739, 1387, 1419
Alw26I GTCTC 3 cut(s) 339, 1351, 1467
AlwI GGATC 5 cut(s) 36, 299, 312, 939, 1023
AoxI GGCC 3 cut(s) 438, 768, 1488
ApeKI GCWGC 2 cut(s) 1057, 1297
ApoI RAATTY 2 cut(s) 741, 1163
Asp700I GAANNNNTTC 1 cut(s) 1402
AspS9I GGNCC 1 cut(s) 439
AsuHPI GGTGA 3 cut(s) 884, 970, 1527
BamHI GGATCC 1 cut(s) 304
BauI CACGAG 1 cut(s) 610
BbsI GAAGAC 2 cut(s) 468, 688
BbvCI CCTCAGC 1 cut(s) 329
BbvI GCAGC 2 cut(s) 1069, 1309
BccI CCATC 7 cut(s) 295, 664, 679, 867, 989, 1141, 1344
BciT130I CCWGG 2 cut(s) 1054, 1492
BclI TGATCA 2 cut(s) 193, 1099
BcoDI GTCTC 3 cut(s) 339, 1351, 1467
BfaI CTAG 4 cut(s) 200, 837, 863, 1073
BfmI CTRYAG 1 cut(s) 1024
BfrI CTTAAG 1 cut(s) 380
BfuAI ACCTGC 1 cut(s) 498
BisI GCNGC 6 cut(s) 23, 162, 393, 775, 1058, 1298
BlsI GCNGC 6 cut(s) 24, 163, 394, 776, 1059, 1299
Bme1390I CCNGG 2 cut(s) 1054, 1492
BmgBI CACGTC 1 cut(s) 315
BmgT120I GGNCC 1 cut(s) 439
BmiI GGNNCC 2 cut(s) 306, 488
BmrFI CCNGG 2 cut(s) 1054, 1492
BmsI GCATC 2 cut(s) 379, 786
BpiI GAAGAC 2 cut(s) 468, 688
BpmI CTGGAG 3 cut(s) 321, 1099, 1236
Bpu10I CCTNAGC 1 cut(s) 329
BsaHI GRCGYC 1 cut(s) 539
BsaI GGTCTC 2 cut(s) 339, 1467
BsaJI CCNNGG 5 cut(s) 42, 165, 294, 530, 765
Bse1I ACTGG 4 cut(s) 325, 338, 488, 1082
Bse3DI GCAATG 1 cut(s) 153
BseBI CCWGG 2 cut(s) 1054, 1492
BseDI CCNNGG 5 cut(s) 42, 165, 294, 530, 765
BseGI GGATG 6 cut(s) 280, 370, 391, 717, 970, 1152
BseMI GCAATG 1 cut(s) 153
BseMII CTCAG 2 cut(s) 320, 819
BseNI ACTGG 4 cut(s) 325, 338, 488, 1082
BseXI GCAGC 2 cut(s) 1069, 1309
BsgI GTGCAG 1 cut(s) 225
Bsh1236I CGCG 1 cut(s) 124
BshFI GGCC 3 cut(s) 440, 770, 1490
BsiSI CCGG 1 cut(s) 26
BsmAI GTCTC 3 cut(s) 339, 1351, 1467
BsnI GGCC 3 cut(s) 440, 770, 1490
Bso31I GGTCTC 2 cut(s) 339, 1467
Bsp1407I TGTACA 1 cut(s) 1465
Bsp19I CCATGG 2 cut(s) 165, 294
BspACI CCGC 7 cut(s) 23, 122, 162, 261, 392, 458, 774
BspANI GGCC 3 cut(s) 440, 770, 1490
BspCNI CTCAG 2 cut(s) 321, 818
BspFNI CGCG 1 cut(s) 124
BspLI GGNNCC 2 cut(s) 306, 488
BspMI ACCTGC 1 cut(s) 498
BspPI GGATC 5 cut(s) 36, 299, 312, 939, 1023
BspTI CTTAAG 1 cut(s) 380
BspTNI GGTCTC 2 cut(s) 339, 1467
BsrBI CCGCTC 1 cut(s) 458
BsrDI GCAATG 1 cut(s) 153
BsrGI TGTACA 1 cut(s) 1465
BsrI ACTGG 4 cut(s) 325, 338, 488, 1082
BssECI CCNNGG 5 cut(s) 42, 165, 294, 530, 765
BssNI GRCGYC 1 cut(s) 539
BssSI CACGAG 1 cut(s) 610
BssT1I CCWWGG 3 cut(s) 165, 294, 530
Bst2BI CACGAG 1 cut(s) 610
Bst2UI CCWGG 2 cut(s) 1054, 1492
Bst4CI ACNGT 3 cut(s) 706, 1463, 1478
Bst6I CTCTTC 1 cut(s) 1479
BstACI GRCGYC 1 cut(s) 539
BstAFI CTTAAG 1 cut(s) 380
BstAUI TGTACA 1 cut(s) 1465
BstC8I GCNNGC 4 cut(s) 217, 326, 676, 772
BstDEI CTNAG 3 cut(s) 329, 805, 985
BstDSI CCRYGG 3 cut(s) 165, 294, 765
BstF5I GGATG 6 cut(s) 280, 370, 391, 717, 970, 1152
BstFNI CGCG 1 cut(s) 124
BstMAI GTCTC 3 cut(s) 339, 1351, 1467
BstMWI GCNNNNNNNGC 4 cut(s) 53, 121, 212, 863
BstNI CCWGG 2 cut(s) 1054, 1492
BstNSI RCATGY 2 cut(s) 403, 583
BstSCI CCNGG 2 cut(s) 1052, 1490
BstSFI CTRYAG 1 cut(s) 1024
BstUI CGCG 1 cut(s) 124
BstV1I GCAGC 2 cut(s) 1069, 1309
BstV2I GAAGAC 2 cut(s) 468, 688
BstX2I RGATCY 3 cut(s) 28, 304, 1015
BstXI CCANNNNNNTGG 1 cut(s) 301
BstYI RGATCY 3 cut(s) 28, 304, 1015
BsuRI GGCC 3 cut(s) 440, 770, 1490
BtgI CCRYGG 3 cut(s) 165, 294, 765
BtgZI GCGATG 1 cut(s) 1322
BtrI CACGTC 1 cut(s) 315
BtsCI GGATG 6 cut(s) 280, 370, 391, 717, 970, 1152
BtsIMutI CAGTG 1 cut(s) 1468
BveI ACCTGC 1 cut(s) 498
Cac8I GCNNGC 4 cut(s) 217, 326, 676, 772
Cfr13I GGNCC 1 cut(s) 439
CseI GACGC 2 cut(s) 547, 1303
Csp6I GTAC 5 cut(s) 428, 661, 1279, 1376, 1466
CviAII CATG 9 cut(s) 166, 220, 295, 400, 580, 635, 781, 820, 1257
CviQI GTAC 5 cut(s) 428, 661, 1279, 1376, 1466
DdeI CTNAG 3 cut(s) 329, 805, 985
Eam1104I CTCTTC 1 cut(s) 1479
EarI CTCTTC 1 cut(s) 1479
Eco130I CCWWGG 3 cut(s) 165, 294, 530
Eco31I GGTCTC 2 cut(s) 339, 1467
EcoRII CCWGG 2 cut(s) 1052, 1490
EcoT14I CCWWGG 3 cut(s) 165, 294, 530
EcoT22I ATGCAT 1 cut(s) 1413
ErhI CCWWGG 3 cut(s) 165, 294, 530
FaeI CATG 9 cut(s) 169, 223, 298, 403, 583, 638, 784, 823, 1260
FatI CATG 9 cut(s) 165, 219, 294, 399, 579, 634, 780, 819, 1256
FbaI TGATCA 2 cut(s) 193, 1099
FblI GTMKAC 2 cut(s) 1371, 1496
Fnu4HI GCNGC 6 cut(s) 23, 162, 393, 775, 1058, 1298
FokI GGATG 6 cut(s) 287, 377, 398, 724, 957, 1159
Fsp4HI GCNGC 6 cut(s) 23, 162, 393, 775, 1058, 1298
FspBI CTAG 4 cut(s) 200, 837, 863, 1073
GluI GCNGC 6 cut(s) 23, 162, 393, 775, 1058, 1298
GsuI CTGGAG 3 cut(s) 321, 1099, 1236
HaeIII GGCC 3 cut(s) 440, 770, 1490
HapII CCGG 1 cut(s) 26
HgaI GACGC 2 cut(s) 547, 1303
Hin1I GRCGYC 1 cut(s) 539
Hin1II CATG 9 cut(s) 169, 223, 298, 403, 583, 638, 784, 823, 1260
HincII GTYRAC 2 cut(s) 318, 537
HindII GTYRAC 2 cut(s) 318, 537
HinfI GANTC 6 cut(s) 376, 550, 693, 901, 1249, 1532
HpaII CCGG 1 cut(s) 26
HphI GGTGA 3 cut(s) 884, 970, 1527
Hpy166II GTNNAC 5 cut(s) 318, 537, 1372, 1466, 1497
Hpy188I TCNGA 5 cut(s) 193, 413, 592, 999, 1333
Hpy188III TCNNGA 5 cut(s) 141, 419, 610, 624, 1233
Hpy8I GTNNAC 5 cut(s) 318, 537, 1372, 1466, 1497
HpyAV CCTTC 4 cut(s) 430, 824, 884, 891
HpyCH4III ACNGT 3 cut(s) 706, 1463, 1478
HpyCH4IV ACGT 2 cut(s) 314, 1374
HpyCH4V TGCA 9 cut(s) 206, 219, 583, 1090, 1169, 1200, 1381, 1411, 1550
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 121, 212, 863
HpyF3I CTNAG 3 cut(s) 329, 805, 985
HpySE526I ACGT 2 cut(s) 314, 1374
Hsp92I GRCGYC 1 cut(s) 539
Hsp92II CATG 9 cut(s) 169, 223, 298, 403, 583, 638, 784, 823, 1260
Ksp22I TGATCA 2 cut(s) 193, 1099
LmnI GCTCC 3 cut(s) 345, 455, 1154
Lsp1109I GCAGC 2 cut(s) 1069, 1309
LweI GCATC 2 cut(s) 379, 786
MaeI CTAG 4 cut(s) 200, 837, 863, 1073
MaeII ACGT 2 cut(s) 314, 1374
MaeIII GTNAC 4 cut(s) 95, 910, 1291, 1478
MbiI CCGCTC 1 cut(s) 458
MboII GAAGA 8 cut(s) 473, 688, 694, 889, 1179, 1412, 1496, 1541
MflI RGATCY 3 cut(s) 28, 304, 1015
MluCI AATT 6 cut(s) 555, 722, 741, 1045, 1163, 1269
MlyI GAGTC 2 cut(s) 702, 1243
MmeI TCCRAC 2 cut(s) 670, 1124
MnlI CCTC 9 cut(s) 52, 167, 324, 951, 978, 984, 1033, 1144, 1480
Mph1103I ATGCAT 1 cut(s) 1413
MroXI GAANNNNTTC 1 cut(s) 1402
MseI TTAA 4 cut(s) 381, 753, 1440, 1517
MslI CAYNNNNRTG 1 cut(s) 299
MspA1I CMGCKG 1 cut(s) 1060
MspCI CTTAAG 1 cut(s) 380
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 2 cut(s) 1054, 1492
MvaI CCWGG 2 cut(s) 1054, 1492
MvnI CGCG 1 cut(s) 124
MwoI GCNNNNNNNGC 4 cut(s) 53, 121, 212, 863
NcoI CCATGG 2 cut(s) 165, 294
NlaIII CATG 9 cut(s) 169, 223, 298, 403, 583, 638, 784, 823, 1260
NlaIV GGNNCC 2 cut(s) 306, 488
NmeAIII GCCGAG 1 cut(s) 23
NmuCI GTSAC 3 cut(s) 910, 1291, 1478
NsiI ATGCAT 1 cut(s) 1413
NspI RCATGY 2 cut(s) 403, 583
PciI ACATGT 1 cut(s) 399
PcsI WCGNNNNNNNCGW 2 cut(s) 98, 1114
PdmI GAANNNNTTC 1 cut(s) 1402
PfeI GAWTC 4 cut(s) 376, 550, 901, 1532
PkrI GCNGC 6 cut(s) 24, 163, 394, 776, 1059, 1299
PleI GAGTC 2 cut(s) 701, 1243
PpsI GAGTC 2 cut(s) 701, 1243
PscI ACATGT 1 cut(s) 399
Psp6I CCWGG 2 cut(s) 1052, 1490
PspGI CCWGG 2 cut(s) 1052, 1490
PspN4I GGNNCC 2 cut(s) 306, 488
PspPI GGNCC 1 cut(s) 439
PsrI GAACNNNNNNTAC 2 cut(s) 560, 592
PsuI RGATCY 3 cut(s) 28, 304, 1015
PvuII CAGCTG 1 cut(s) 1060
RsaI GTAC 5 cut(s) 429, 662, 1280, 1377, 1467
RsaNI GTAC 5 cut(s) 428, 661, 1279, 1376, 1466
RseI CAYNNNNRTG 1 cut(s) 299
SaqAI TTAA 4 cut(s) 381, 753, 1440, 1517
SatI GCNGC 6 cut(s) 23, 162, 393, 775, 1058, 1298
Sau96I GGNCC 1 cut(s) 439
SchI GAGTC 2 cut(s) 702, 1243
ScrFI CCNGG 2 cut(s) 1054, 1492
SfaNI GCATC 2 cut(s) 379, 786
SfcI CTRYAG 1 cut(s) 1024
SmiMI CAYNNNNRTG 1 cut(s) 299
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 6 cut(s) 555, 722, 741, 1045, 1163, 1269
SsiI CCGC 7 cut(s) 23, 122, 162, 261, 392, 458, 774
SspMI CTAG 4 cut(s) 200, 837, 863, 1073
StyD4I CCNGG 2 cut(s) 1052, 1490
StyI CCWWGG 3 cut(s) 165, 294, 530
TaaI ACNGT 3 cut(s) 706, 1463, 1478
TaiI ACGT 2 cut(s) 317, 1377
TaqI TCGA 1 cut(s) 943
TasI AATT 6 cut(s) 555, 722, 741, 1045, 1163, 1269
TatI WGTACW 2 cut(s) 660, 1465
TauI GCSGC 4 cut(s) 25, 164, 395, 777
TfiI GAWTC 4 cut(s) 376, 550, 901, 1532
Tru1I TTAA 4 cut(s) 381, 753, 1440, 1517
Tru9I TTAA 4 cut(s) 381, 753, 1440, 1517
TscAI CASTG 1 cut(s) 1468
TseFI GTSAC 3 cut(s) 910, 1291, 1478
TseI GCWGC 2 cut(s) 1057, 1297
Tsp45I GTSAC 3 cut(s) 910, 1291, 1478
TspDTI ATGAA 7 cut(s) 177, 270, 651, 688, 728, 903, 1179
TspGWI ACGGA 3 cut(s) 754, 1296, 1301
TspRI CASTG 1 cut(s) 1468
Vha464I CTTAAG 1 cut(s) 380
XapI RAATTY 2 cut(s) 741, 1163
XceI RCATGY 2 cut(s) 403, 583
XcmI CCANNNNNNNNNTGG 1 cut(s) 866
XmiI GTMKAC 2 cut(s) 1371, 1496
XmnI GAANNNNTTC 1 cut(s) 1402
XspI CTAG 4 cut(s) 200, 837, 863, 1073
Zsp2I ATGCAT 1 cut(s) 1413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.