Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009042

Physical Location & Seq

Genomic Coordinates Reverse (-)

3607181 .. 3610695

Gene Structure 3515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGCACTTCTCCGCAACTCGAACAGAAAGATTGGAACTCAAGTGTCGCACATGCTCACATCCAACAAACCAATCACGACAAAAAGTCTCAGAAAACACAGGAAAAAAAAGAAGTAATTTTAATAAAAGCTATCAATACTATTATTCAATTTACCCTTTATTTTATCCTTATCGTGCAAGGTCTGCCTTCTGTTCTGTCTTCAGCCTACCAACCAACAATTCAACCTCTATACCTACCCCACTTCTCCCTCCCCCTTCCAACCACCACCATGGTATTTCTCCCAATTCCATAGCTCCATTCTTTCTCCTGATTTCTCAAAGAACCCATCTCTCTCCTCCCCCCCCCCTCTCTCTCTCTCTCTCATCCATGGAGGCCAAGCTGCTGATGGCCTCCTCTCCTGCCGCTCTTTCAGCTCCCCATGTTTCCAATTCAAGACCCAATTATTTGTTTCCCTTGAAAGCAACGCAATCCAACAGCTTCGCATGCCTCAATTCTTCCTTACCAAAGATACCAAATTTGTCTGTCCAGGCTGCTTCGACTTCCATTGGATCATTGGCTACGAAGAAAAGGATGGATGAAACTGATAGTTTGACACTAGAAGGTATAAGACATTCTTCGATCCGGCAGGAGGATAGCATAATTTTTAGCCTTTTAGAGAGAGCTCAATACTGTCATAATTTGCTTACGTACAACCCCAATGCTTTCCCTGTTGAGTGTTTCCACGGCTCCTTGGTAGAACACATTCTTAAAGAAACAGAAAAGCTTCATGGCCAGGTGGGCAGATTCAGCAGTCCTGATGAGCATCCTTTCTTTCCGGATGACGTACCTGAACCAGTGTTGCCACCTCTGCACTACCCTCAGGTACTGCATCCCATTGCCAACTCAATTAATATAAACAGCAAAGTTTGGGAAATGTACTTCAGGGATATTATTCCAAGACTGGTTAAAGAAGGAGATGATGGTAATTACGGTTCAACTGCTGTTTGTGACACAATGTGCTTGCAGGCTCTGTCCAAGCGAATCCACTATGGTAAATTTGTTGCGGAGTGCAAGTTTCAGTCCAATCCAAAGTCCTACGAAGCTGCCATTATCGAACAGAACAGGGACAAGGTGATGGCTTTGTTGACATTTCCGACGGTTGAGGAGGCAATCATAAAGAGGGTAGAAATGAAGGCCAAAACTTACGGGCAAGAAGTGACATTGTACGAAGGGGAAAAGAAAAGTCCCAACCTCGTGTACAAGATAAAACCGACCTTGGTTGCAGATTTATATGGGGAATGGATCATGCCAATGACCAAGGAAGTTCAAGTTGAATACTTGTTAAGAAGGTTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004106 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009636 GO:0009987 GO:0016053 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016853 GO:0016866 GO:0019438 GO:0019752 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0097237 GO:0098754 GO:0098869 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

446

Amino Acids

50.3

Weight (kDa)

8.78

Isoelectric Point (pI)

51.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CM_2	PF01817	324 - 436	1.4e-10	Chorismate mutase type II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29200
fragaria_vesca	FvH4_6g47770 FvH4_6g47770
malus_domestica	MD09G1057700.v1.1 MD09G1058000.v1.1 MD17G1054600.v1.1
prunus_persica	Prupe.3G261500_v2.0.a1
pyrus_communis	pycom111g04790 pycom111g04830 pycom17g05220
rosa_chinensis	RchiOBHm_Chr2g0166931
rosa_laevigata	RLG00000021679
rosa_multiflora	Rmu_sc0002735.1_g000017 Rmu_sc0005344.1_g000010
rosa_roxburghii	Rroxscaffold_2G00084010 Rroxscaffold_2G00084420
rosa_rugosa	Rorug02G0526400
rosa_samantha	Rh2AG593300 Rh2BG604900 Rh2CG575700 Rh2DG616500
rosa_wichuraiana	Rw2G049400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	404
AccIII	TCCGGA	1 cut(s)	814
AciI	CCGC	3 cut(s)	12, 402, 1043
AclWI	GGATC	3 cut(s)	556, 613, 1289
AcoI	YGGCCR	1 cut(s)	769
AcsI	RAATTY	2 cut(s)	514, 1034
AcuI	CTGAAG	2 cut(s)	184, 904
AdeI	CACNNNGTG	1 cut(s)	996
AfaI	GTAC	6 cut(s)	689, 825, 864, 917, 1205, 1238
AfiI	CCNNNNNNNGG	1 cut(s)	628
AgsI	TTSAA	7 cut(s)	147, 222, 432, 457, 975, 1307, 1313
AhdI	GACNNNNNGTC	1 cut(s)	83
AjnI	CCWGG	2 cut(s)	525, 771
AjuI	GAANNNNNNNTTGG	2 cut(s)	202, 234
AluBI	AGCT	8 cut(s)	129, 293, 379, 413, 477, 662, 763, 1082
AluI	AGCT	8 cut(s)	129, 293, 379, 413, 477, 662, 763, 1082
Alw21I	GWGCWC	1 cut(s)	664
Alw26I	GTCTC	1 cut(s)	91
AlwI	GGATC	3 cut(s)	556, 613, 1289
AlwNI	CAGNNNCTG	2 cut(s)	865, 1009
Aor13HI	TCCGGA	1 cut(s)	814
AoxI	GGCC	4 cut(s)	372, 387, 769, 1173
ApeKI	GCWGC	3 cut(s)	379, 530, 1082
ApoI	RAATTY	2 cut(s)	514, 1034
AseI	ATTAAT	1 cut(s)	888
Asp700I	GAANNNNTTC	2 cut(s)	741, 762
AsuHPI	GGTGA	1 cut(s)	1123
AxyI	CCTNAGG	1 cut(s)	858
BalI	TGGCCA	1 cut(s)	771
BanII	GRGCYC	1 cut(s)	664
BauI	CACGAG	1 cut(s)	1232
BbsI	GAAGAC	1 cut(s)	190
Bbv12I	GWGCWC	1 cut(s)	664
BbvI	GCAGC	3 cut(s)	366, 517, 1069
BccI	CCATC	5 cut(s)	333, 379, 565, 953, 1108
BceAI	ACGGC	1 cut(s)	739
BciT130I	CCWGG	2 cut(s)	527, 773
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	1 cut(s)	596
BglI	GCCNNNNNGGC	1 cut(s)	777
BisI	GCNGC	4 cut(s)	380, 402, 531, 1083
BlsI	GCNGC	4 cut(s)	381, 403, 532, 1084
Bme1390I	CCNGG	2 cut(s)	527, 773
BmeRI	GACNNNNNGTC	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	727
BmrFI	CCNGG	2 cut(s)	527, 773
BmsI	GCATC	2 cut(s)	811, 877
BpiI	GAAGAC	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	23
BsaAI	YACGTR	1 cut(s)	687
BsaBI	GATNNNNATC	1 cut(s)	801
BsaJI	CCNNGG	6 cut(s)	268, 366, 721, 729, 1254, 1296
BsaWI	WCCGGW	1 cut(s)	814
BsaXI	ACNNNNNCTCC	2 cut(s)	1037, 1067
Bsc4I	CCNNNNNNNGG	1 cut(s)	628
Bse1I	ACTGG	2 cut(s)	833, 945
Bse21I	CCTNAGG	1 cut(s)	858
Bse3DI	GCAATG	1 cut(s)	873
Bse8I	GATNNNNATC	1 cut(s)	801
BseAI	TCCGGA	1 cut(s)	814
BseBI	CCWGG	2 cut(s)	527, 773
BseDI	CCNNGG	6 cut(s)	268, 366, 721, 729, 1254, 1296
BseGI	GGATG	7 cut(s)	58, 362, 576, 580, 802, 823, 868
BseJI	GATNNNNATC	1 cut(s)	801
BseLI	CCNNNNNNNGG	1 cut(s)	628
BseMI	GCAATG	1 cut(s)	873
BseMII	CTCAG	2 cut(s)	102, 872
BseNI	ACTGG	2 cut(s)	833, 945
BseRI	GAGGAG	3 cut(s)	324, 382, 1157
BseXI	GCAGC	3 cut(s)	366, 517, 1069
BsgI	GTGCAG	1 cut(s)	833
BshFI	GGCC	4 cut(s)	374, 389, 771, 1175
BsiHKAI	GWGCWC	1 cut(s)	664
BsiSI	CCGG	2 cut(s)	622, 815
BslFI	GGGAC	2 cut(s)	1118, 1209
BslI	CCNNNNNNNGG	1 cut(s)	628
BsmAI	GTCTC	1 cut(s)	91
BsmFI	GGGAC	2 cut(s)	1118, 1209
BsnI	GGCC	4 cut(s)	374, 389, 771, 1175
Bsp1286I	GDGCHC	1 cut(s)	664
Bsp13I	TCCGGA	1 cut(s)	814
Bsp1407I	TGTACA	1 cut(s)	1236
Bsp143I	GATC	3 cut(s)	548, 618, 1281
Bsp19I	CCATGG	2 cut(s)	268, 366
BspACI	CCGC	3 cut(s)	12, 402, 1043
BspANI	GGCC	4 cut(s)	374, 389, 771, 1175
BspCNI	CTCAG	2 cut(s)	101, 871
BspEI	TCCGGA	1 cut(s)	814
BspLI	GGNNCC	1 cut(s)	727
BspPI	GGATC	3 cut(s)	556, 613, 1289
BsrBI	CCGCTC	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	873
BsrGI	TGTACA	1 cut(s)	1236
BsrI	ACTGG	2 cut(s)	833, 945
BssECI	CCNNGG	6 cut(s)	268, 366, 721, 729, 1254, 1296
BssMI	GATC	3 cut(s)	548, 618, 1281
BssSI	CACGAG	1 cut(s)	1232
BssT1I	CCWWGG	5 cut(s)	268, 366, 729, 1254, 1296
Bst2BI	CACGAG	1 cut(s)	1232
Bst2UI	CCWGG	2 cut(s)	527, 773
Bst4CI	ACNGT	3 cut(s)	671, 971, 1138
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstAUI	TGTACA	1 cut(s)	1236
BstBAI	YACGTR	1 cut(s)	687
BstC8I	GCNNGC	3 cut(s)	484, 1001, 1005
BstDEI	CTNAG	2 cut(s)	88, 858
BstDSI	CCRYGG	3 cut(s)	268, 366, 721
BstF5I	GGATG	7 cut(s)	58, 362, 576, 580, 802, 823, 868
BstKTI	GATC	3 cut(s)	551, 621, 1284
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	3 cut(s)	548, 618, 1281
BstMWI	GCNNNNNNNGC	6 cut(s)	182, 410, 483, 777, 786, 847
BstNI	CCWGG	2 cut(s)	527, 773
BstNSI	RCATGY	2 cut(s)	54, 486
BstSCI	CCNGG	2 cut(s)	525, 771
BstSNI	TACGTA	1 cut(s)	687
BstV1I	GCAGC	3 cut(s)	366, 517, 1069
BstV2I	GAAGAC	1 cut(s)	190
BstXI	CCANNNNNNTGG	1 cut(s)	269
Bsu36I	CCTNAGG	1 cut(s)	858
BsuRI	GGCC	4 cut(s)	374, 389, 771, 1175
BtgI	CCRYGG	3 cut(s)	268, 366, 721
BtsCI	GGATG	7 cut(s)	58, 362, 576, 580, 802, 823, 868
BtsIMutI	CAGTG	1 cut(s)	840
Cac8I	GCNNGC	3 cut(s)	484, 1001, 1005
CaiI	CAGNNNCTG	2 cut(s)	865, 1009
Csp6I	GTAC	6 cut(s)	688, 824, 863, 916, 1204, 1237
CviAII	CATG	7 cut(s)	51, 269, 367, 419, 483, 767, 1285
CviQI	GTAC	6 cut(s)	688, 824, 863, 916, 1204, 1237
DdeI	CTNAG	2 cut(s)	88, 858
DpnI	GATC	3 cut(s)	550, 620, 1283
DpnII	GATC	3 cut(s)	548, 618, 1281
DraIII	CACNNNGTG	1 cut(s)	996
DriI	GACNNNNNGTC	1 cut(s)	83
EaeI	YGGCCR	1 cut(s)	769
Eam1105I	GACNNNNNGTC	1 cut(s)	83
Ecl136II	GAGCTC	1 cut(s)	662
Eco105I	TACGTA	1 cut(s)	687
Eco130I	CCWWGG	5 cut(s)	268, 366, 729, 1254, 1296
Eco24I	GRGCYC	1 cut(s)	664
Eco53kI	GAGCTC	1 cut(s)	662
Eco57I	CTGAAG	2 cut(s)	184, 904
Eco81I	CCTNAGG	1 cut(s)	858
EcoICRI	GAGCTC	1 cut(s)	662
EcoRII	CCWGG	2 cut(s)	525, 771
EcoT14I	CCWWGG	5 cut(s)	268, 366, 729, 1254, 1296
EcoT38I	GRGCYC	1 cut(s)	664
ErhI	CCWWGG	5 cut(s)	268, 366, 729, 1254, 1296
FaeI	CATG	7 cut(s)	54, 272, 370, 422, 486, 770, 1288
FalI	AAGNNNNNCTT	2 cut(s)	598, 630
FaqI	GGGAC	2 cut(s)	1118, 1209
FatI	CATG	7 cut(s)	50, 268, 366, 418, 482, 766, 1284
Fnu4HI	GCNGC	4 cut(s)	380, 402, 531, 1083
FokI	GGATG	7 cut(s)	45, 349, 583, 587, 789, 830, 855
FriOI	GRGCYC	1 cut(s)	664
Fsp4HI	GCNGC	4 cut(s)	380, 402, 531, 1083
FspBI	CTAG	1 cut(s)	596
GluI	GCNGC	4 cut(s)	380, 402, 531, 1083
HaeIII	GGCC	4 cut(s)	374, 389, 771, 1175
HapII	CCGG	2 cut(s)	622, 815
Hin1II	CATG	7 cut(s)	54, 272, 370, 422, 486, 770, 1288
HincII	GTYRAC	1 cut(s)	1125
HindII	GTYRAC	1 cut(s)	1125
HindIII	AAGCTT	1 cut(s)	761
HinfI	GANTC	2 cut(s)	783, 1020
HpaII	CCGG	2 cut(s)	622, 815
HphI	GGTGA	1 cut(s)	1123
Hpy166II	GTNNAC	2 cut(s)	1125, 1237
Hpy188I	TCNGA	2 cut(s)	91, 1134
Hpy188III	TCNNGA	5 cut(s)	75, 307, 432, 794, 815
Hpy8I	GTNNAC	2 cut(s)	1125, 1237
Hpy99I	CGWCG	1 cut(s)	1138
HpyAV	CCTTC	7 cut(s)	196, 264, 593, 944, 1165, 1202, 1320
HpyCH4III	ACNGT	3 cut(s)	671, 971, 1138
HpyCH4IV	ACGT	2 cut(s)	686, 822
HpyCH4V	TGCA	7 cut(s)	4, 176, 850, 868, 1003, 1050, 1262
HpyF10VI	GCNNNNNNNGC	6 cut(s)	182, 410, 483, 777, 786, 847
HpyF3I	CTNAG	2 cut(s)	88, 858
HpySE526I	ACGT	2 cut(s)	686, 822
Hsp92II	CATG	7 cut(s)	54, 272, 370, 422, 486, 770, 1288
Kpn2I	TCCGGA	1 cut(s)	814
Kzo9I	GATC	3 cut(s)	548, 618, 1281
LmnI	GCTCC	3 cut(s)	298, 418, 731
Lsp1109I	GCAGC	3 cut(s)	366, 517, 1069
LweI	GCATC	2 cut(s)	811, 877
MaeI	CTAG	1 cut(s)	596
MaeII	ACGT	2 cut(s)	686, 822
MaeIII	GTNAC	2 cut(s)	986, 1195
MalI	GATC	3 cut(s)	550, 620, 1283
MbiI	CCGCTC	1 cut(s)	404
MboI	GATC	3 cut(s)	548, 618, 1281
MboII	GAAGA	4 cut(s)	190, 486, 574, 606
MhlI	GDGCHC	1 cut(s)	664
MlsI	TGGCCA	1 cut(s)	771
MluNI	TGGCCA	1 cut(s)	771
MmeI	TCCRAC	5 cut(s)	86, 282, 495, 1157, 1311
Mox20I	TGGCCA	1 cut(s)	771
MroI	TCCGGA	1 cut(s)	814
MroXI	GAANNNNTTC	2 cut(s)	741, 762
MscI	TGGCCA	1 cut(s)	771
MseI	TTAA	5 cut(s)	120, 747, 888, 945, 1322
MslI	CAYNNNNRTG	2 cut(s)	267, 1289
Msp20I	TGGCCA	1 cut(s)	771
MspI	CCGG	2 cut(s)	622, 815
MspR9I	CCNGG	2 cut(s)	527, 773
MvaI	CCWGG	2 cut(s)	527, 773
MwoI	GCNNNNNNNGC	6 cut(s)	182, 410, 483, 777, 786, 847
NcoI	CCATGG	2 cut(s)	268, 366
NdeII	GATC	3 cut(s)	548, 618, 1281
NlaIII	CATG	7 cut(s)	54, 272, 370, 422, 486, 770, 1288
NlaIV	GGNNCC	1 cut(s)	727
NmuCI	GTSAC	2 cut(s)	986, 1195
NspI	RCATGY	2 cut(s)	54, 486
PaeI	GCATGC	1 cut(s)	486
PdmI	GAANNNNTTC	2 cut(s)	741, 762
PfeI	GAWTC	2 cut(s)	783, 1020
PkrI	GCNGC	4 cut(s)	381, 403, 532, 1084
Ppu21I	YACGTR	1 cut(s)	687
PshBI	ATTAAT	1 cut(s)	888
Psp124BI	GAGCTC	1 cut(s)	664
Psp6I	CCWGG	2 cut(s)	525, 771
PspGI	CCWGG	2 cut(s)	525, 771
PspN4I	GGNNCC	1 cut(s)	727
PsrI	GAACNNNNNNTAC	2 cut(s)	955, 987
PstNI	CAGNNNCTG	2 cut(s)	865, 1009
RsaI	GTAC	6 cut(s)	689, 825, 864, 917, 1205, 1238
RsaNI	GTAC	6 cut(s)	688, 824, 863, 916, 1204, 1237
RseI	CAYNNNNRTG	2 cut(s)	267, 1289
SacI	GAGCTC	1 cut(s)	664
SaqAI	TTAA	5 cut(s)	120, 747, 888, 945, 1322
SatI	GCNGC	4 cut(s)	380, 402, 531, 1083
Sau3AI	GATC	3 cut(s)	548, 618, 1281
ScrFI	CCNGG	2 cut(s)	527, 773
SduI	GDGCHC	1 cut(s)	664
SfaNI	GCATC	2 cut(s)	811, 877
SmiMI	CAYNNNNRTG	2 cut(s)	267, 1289
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
SnaBI	TACGTA	1 cut(s)	687
SphI	GCATGC	1 cut(s)	486
SsiI	CCGC	3 cut(s)	12, 402, 1043
SspMI	CTAG	1 cut(s)	596
SstI	GAGCTC	1 cut(s)	664
StyD4I	CCNGG	2 cut(s)	525, 771
StyI	CCWWGG	5 cut(s)	268, 366, 729, 1254, 1296
TaaI	ACNGT	3 cut(s)	671, 971, 1138
TaiI	ACGT	2 cut(s)	689, 825
TaqI	TCGA	4 cut(s)	19, 536, 617, 1092
TatI	WGTACW	2 cut(s)	915, 1236
TauI	GCSGC	1 cut(s)	404
TfiI	GAWTC	2 cut(s)	783, 1020
Tru1I	TTAA	5 cut(s)	120, 747, 888, 945, 1322
Tru9I	TTAA	5 cut(s)	120, 747, 888, 945, 1322
TscAI	CASTG	1 cut(s)	840
TseFI	GTSAC	2 cut(s)	986, 1195
TseI	GCWGC	3 cut(s)	379, 530, 1082
Tsp45I	GTSAC	2 cut(s)	986, 1195
TspDTI	ATGAA	3 cut(s)	591, 755, 1184
TspRI	CASTG	1 cut(s)	840
VspI	ATTAAT	1 cut(s)	888
XapI	RAATTY	2 cut(s)	514, 1034
XceI	RCATGY	2 cut(s)	54, 486
XcmI	CCANNNNNNNNNTGG	2 cut(s)	382, 550
XmnI	GAANNNNTTC	2 cut(s)	741, 762
XspI	CTAG	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.