pycom17g06640
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0016883
Physical Location & Seq
Reverse (-)
4821700 .. 4824433
2734 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 867 bp
ATGGCTTCTTCAAATCATCTTGAGCTTACATTGAGTCTTAAGTTGGCAAACATTGAAAATGTTTCACAAAAATTGTCTGTTTTAAATGAGCACCTTCAAAAACATCAAGAAGAGCTTCGTAAATTAGAAGCGTTTAGAACTGAGATGCCTCACTCTGTGCTCCTCTTATCGGACGCTGTACAAGTCCTCAAGAATGAGATTTTAGAACTCTCCGATCATCAATCTGAACGACGGAGTGCGTTCAGAAAATACAAGAGCTCATCTCCTCCGTTCAACCCTAAGGCATATGGCATAGATACTACTGATCACAAGCAGGTGATGACTTTCCAATGTTCCCAATCATCTAGTCAGATGGGAATGATGGTGAACAAAGAGCCAACAAGCCCTACGCCGTTCCCATGCGATTTGAACATGGCGGCCGACGATTTTGAGCTAGAGTCAAAACCACAGGCACAACCGGAGTCCCAGCCACAGCAACAGCTTCCACTGCCACTAGCGCTGCCAAACCTGAAGAACAAAAGGAGGAGCTGGACGCCGGAGCTCCAAGTAAGGTTTCTGGAGGCCATGAGTTTACTTGGAGGTCCTCAAGAGGCTACTCCAAAGCAGATACAAGCTGTCATGCAGGTCGATGGGCTAACCCACGACCAAGTCAAGAGTCATCTGCAGAAGTACAGACTTAACAACCGAGGAGTCCAACCGGCCTCTGCCACAAGTGGCCAAAGGGCACCCCATTTCTACAGGGACTATTGGCAGCAACAACAGCAGCTCGATGCAAGCAACGGTGGAGTAAGAGTTGGAGTAGGGTCTTCAAACGGTGGCGGTAGAAGCAGGGACATTCCAAACAAGAAAGCAAAGACAAGTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

289

Amino Acids

32.35

Weight (kDa)

9.26

Isoelectric Point (pI)

64.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHO5_N PF26575 15 - 67 6.7e-17 HHO5-like, N-terminal domain
Myb_DNA-binding PF00249 174 - 225 8.7e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016883)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18211 FvH4_6g46323
malus_domestica MD17G1066200.v1.1
prunus_persica Prupe.3G248500_v2.0.a1
pyrus_communis pycom17g06640
rosa_laevigata RLG00000021490
rosa_multiflora Rmu_sc0000946.1_g000034
rosa_roxburghii Rroxscaffold_2G00086290
rosa_rugosa Rorug02G0510500
rosa_samantha Rh2AG578600 Rh2BG589900 Rh2CG560500 Rh2DG600100
rosa_wichuraiana Rw2G048040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 304
Acc36I ACCTGC 2 cut(s) 304, 613
AccB1I GGYRCC 1 cut(s) 724
AciI CCGC 2 cut(s) 416, 819
AcoI YGGCCR 2 cut(s) 417, 715
AcuI CTGAAG 1 cut(s) 530
AcyI GRCGYC 1 cut(s) 533
AdeI CACNNNGTG 1 cut(s) 157
AfaI GTAC 2 cut(s) 180, 671
AfeI AGCGCT 1 cut(s) 498
AfiI CCNNNNNNNGG 1 cut(s) 169
AflII CTTAAG 1 cut(s) 38
AgsI TTSAA 6 cut(s) 12, 56, 98, 274, 409, 810
AjuI GAANNNNNNNTTGG 2 cut(s) 537, 569
AluBI AGCT 9 cut(s) 25, 115, 258, 433, 481, 528, 541, 614, 766
AluI AGCT 9 cut(s) 25, 115, 258, 433, 481, 528, 541, 614, 766
Alw21I GWGCWC 4 cut(s) 93, 162, 260, 543
Aor51HI AGCGCT 1 cut(s) 498
AoxI GGCC 4 cut(s) 417, 561, 699, 715
ApeKI GCWGC 3 cut(s) 499, 751, 763
Asp700I GAANNNNTTC 1 cut(s) 114
AspLEI GCGC 1 cut(s) 499
AspS9I GGNCC 1 cut(s) 581
AsuHPI GGTGA 2 cut(s) 328, 376
AvaII GGWCC 1 cut(s) 581
AxyI CCTNAGG 1 cut(s) 279
BaeGI GKGCMC 1 cut(s) 727
BalI TGGCCA 1 cut(s) 717
BanI GGYRCC 1 cut(s) 724
BanII GRGCYC 2 cut(s) 260, 543
BbsI GAAGAC 1 cut(s) 798
Bbv12I GWGCWC 4 cut(s) 93, 162, 260, 543
BbvI GCAGC 3 cut(s) 486, 763, 775
BccI CCATC 3 cut(s) 346, 355, 623
BceAI ACGGC 1 cut(s) 376
BclI TGATCA 1 cut(s) 304
BfaI CTAG 3 cut(s) 345, 434, 494
BfmI CTRYAG 2 cut(s) 662, 736
BfoI RGCGCY 1 cut(s) 500
BfrI CTTAAG 1 cut(s) 38
BfuAI ACCTGC 2 cut(s) 304, 613
BisI GCNGC 4 cut(s) 417, 500, 752, 764
BlsI GCNGC 4 cut(s) 418, 501, 753, 765
Bme18I GGWCC 1 cut(s) 581
BmgT120I GGNCC 1 cut(s) 581
BmiI GGNNCC 1 cut(s) 726
BmsI GCATC 2 cut(s) 135, 760
BpiI GAAGAC 1 cut(s) 798
BplI GAGNNNNNCTC 2 cut(s) 247, 279
BpmI CTGGAG 1 cut(s) 578
BpuEI CTTGAG 3 cut(s) 41, 173, 570
BsaHI GRCGYC 1 cut(s) 533
BsaJI CCNNGG 1 cut(s) 685
BsaWI WCCGGW 1 cut(s) 457
BsaXI ACNNNNNCTCC 2 cut(s) 777, 807
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse118I RCCGGY 1 cut(s) 697
Bse21I CCTNAGG 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 685
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 132
BseRI GAGGAG 4 cut(s) 152, 255, 538, 702
BseSI GKGCMC 1 cut(s) 727
BseX3I CGGCCG 1 cut(s) 417
BseXI GCAGC 3 cut(s) 486, 763, 775
BseYI CCCAGC 1 cut(s) 465
Bsh1285I CGRYCG 1 cut(s) 420
BshFI GGCC 4 cut(s) 419, 563, 701, 717
BshNI GGYRCC 1 cut(s) 724
BsiEI CGRYCG 1 cut(s) 420
BsiHKAI GWGCWC 4 cut(s) 93, 162, 260, 543
BsiSI CCGG 3 cut(s) 458, 536, 698
BslFI GGGAC 3 cut(s) 448, 755, 845
BslI CCNNNNNNNGG 1 cut(s) 169
BsmFI GGGAC 3 cut(s) 448, 755, 845
BsnI GGCC 4 cut(s) 419, 563, 701, 717
Bsp1286I GDGCHC 5 cut(s) 93, 162, 260, 543, 727
Bsp1407I TGTACA 1 cut(s) 178
Bsp143I GATC 2 cut(s) 214, 304
BspACI CCGC 2 cut(s) 416, 819
BspANI GGCC 4 cut(s) 419, 563, 701, 717
BspCNI CTCAG 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 726
BspMAI CTGCAG 1 cut(s) 666
BspMI ACCTGC 2 cut(s) 304, 613
BspQI GCTCTTC 1 cut(s) 105
BspT107I GGYRCC 1 cut(s) 724
BspTI CTTAAG 1 cut(s) 38
BsrFI RCCGGY 1 cut(s) 697
BsrGI TGTACA 1 cut(s) 178
BssAI RCCGGY 1 cut(s) 697
BssECI CCNNGG 1 cut(s) 685
BssMI GATC 2 cut(s) 214, 304
BssNI GRCGYC 1 cut(s) 533
Bst4CI ACNGT 2 cut(s) 782, 815
Bst6I CTCTTC 1 cut(s) 105
BstACI GRCGYC 1 cut(s) 533
BstAFI CTTAAG 1 cut(s) 38
BstAUI TGTACA 1 cut(s) 178
BstC8I GCNNGC 1 cut(s) 775
BstDEI CTNAG 2 cut(s) 141, 279
BstH2I RGCGCY 1 cut(s) 500
BstHHI GCGC 1 cut(s) 499
BstKTI GATC 2 cut(s) 217, 307
BstMBI GATC 2 cut(s) 214, 304
BstMCI CGRYCG 1 cut(s) 420
BstMWI GCNNNNNNNGC 4 cut(s) 487, 496, 760, 825
BstSFI CTRYAG 2 cut(s) 662, 736
BstSLI GKGCMC 1 cut(s) 727
BstV1I GCAGC 3 cut(s) 486, 763, 775
BstV2I GAAGAC 1 cut(s) 798
BstZI CGGCCG 1 cut(s) 417
Bsu36I CCTNAGG 1 cut(s) 279
BsuRI GGCC 4 cut(s) 419, 563, 701, 717
BtsI GCAGTG 1 cut(s) 485
BtsIMutI CAGTG 1 cut(s) 485
BveI ACCTGC 2 cut(s) 304, 613
Cac8I GCNNGC 1 cut(s) 775
CfoI GCGC 1 cut(s) 499
Cfr10I RCCGGY 1 cut(s) 697
Cfr13I GGNCC 1 cut(s) 581
CseI GACGC 2 cut(s) 182, 541
Csp6I GTAC 2 cut(s) 179, 670
CviAII CATG 4 cut(s) 399, 412, 565, 619
CviQI GTAC 2 cut(s) 179, 670
DdeI CTNAG 2 cut(s) 141, 279
DpnI GATC 2 cut(s) 216, 306
DpnII GATC 2 cut(s) 214, 304
DraI TTTAAA 1 cut(s) 84
DraIII CACNNNGTG 1 cut(s) 157
EaeI YGGCCR 2 cut(s) 417, 715
EagI CGGCCG 1 cut(s) 417
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Ecl136II GAGCTC 2 cut(s) 258, 541
EclXI CGGCCG 1 cut(s) 417
Eco24I GRGCYC 2 cut(s) 260, 543
Eco47I GGWCC 1 cut(s) 581
Eco47III AGCGCT 1 cut(s) 498
Eco52I CGGCCG 1 cut(s) 417
Eco53kI GAGCTC 2 cut(s) 258, 541
Eco57I CTGAAG 1 cut(s) 530
Eco81I CCTNAGG 1 cut(s) 279
EcoICRI GAGCTC 2 cut(s) 258, 541
EcoO109I RGGNCCY 1 cut(s) 581
EcoT38I GRGCYC 2 cut(s) 260, 543
FaeI CATG 4 cut(s) 402, 415, 568, 622
FaiI YATR 7 cut(s) 286, 288, 293, 400, 413, 566, 620
FalI AAGNNNNNCTT 2 cut(s) 99, 131
FaqI GGGAC 3 cut(s) 448, 755, 845
FatI CATG 4 cut(s) 398, 411, 564, 618
FauNDI CATATG 1 cut(s) 286
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 4 cut(s) 417, 500, 752, 764
FriOI GRGCYC 2 cut(s) 260, 543
Fsp4HI GCNGC 4 cut(s) 417, 500, 752, 764
FspBI CTAG 3 cut(s) 345, 434, 494
GlaI GCGC 1 cut(s) 498
GluI GCNGC 4 cut(s) 417, 500, 752, 764
GsaI CCCAGC 1 cut(s) 469
GsuI CTGGAG 1 cut(s) 578
HaeII RGCGCY 1 cut(s) 500
HaeIII GGCC 4 cut(s) 419, 563, 701, 717
HapII CCGG 3 cut(s) 458, 536, 698
HgaI GACGC 2 cut(s) 182, 541
HhaI GCGC 1 cut(s) 499
Hin1I GRCGYC 1 cut(s) 533
Hin1II CATG 4 cut(s) 402, 415, 568, 622
Hin6I GCGC 1 cut(s) 497
HinP1I GCGC 1 cut(s) 497
HinfI GANTC 5 cut(s) 34, 437, 461, 655, 690
HpaII CCGG 3 cut(s) 458, 536, 698
HphI GGTGA 2 cut(s) 328, 376
Hpy166II GTNNAC 2 cut(s) 367, 572
Hpy188I TCNGA 5 cut(s) 172, 214, 226, 245, 351
Hpy188III TCNNGA 6 cut(s) 20, 107, 190, 557, 587, 652
Hpy8I GTNNAC 2 cut(s) 367, 572
Hpy99I CGWCG 2 cut(s) 234, 425
HpyAV CCTTC 1 cut(s) 104
HpyCH4III ACNGT 2 cut(s) 782, 815
HpyCH4V TGCA 3 cut(s) 622, 664, 773
HpyF10VI GCNNNNNNNGC 4 cut(s) 487, 496, 760, 825
HpyF3I CTNAG 2 cut(s) 141, 279
Hsp92I GRCGYC 1 cut(s) 533
Hsp92II CATG 4 cut(s) 402, 415, 568, 622
HspAI GCGC 1 cut(s) 497
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 2 cut(s) 214, 304
LguI GCTCTTC 1 cut(s) 105
LmnI GCTCC 4 cut(s) 165, 525, 538, 546
Lsp1109I GCAGC 3 cut(s) 486, 763, 775
LweI GCATC 2 cut(s) 135, 760
MaeI CTAG 3 cut(s) 345, 434, 494
MalI GATC 2 cut(s) 216, 306
MboI GATC 2 cut(s) 214, 304
MboII GAAGA 3 cut(s) 122, 523, 798
MhlI GDGCHC 5 cut(s) 93, 162, 260, 543, 727
MlsI TGGCCA 1 cut(s) 717
MluCI AATT 2 cut(s) 71, 122
MluNI TGGCCA 1 cut(s) 717
MlyI GAGTC 5 cut(s) 43, 446, 470, 664, 699
MmeI TCCRAC 2 cut(s) 718, 775
Mox20I TGGCCA 1 cut(s) 717
MroXI GAANNNNTTC 1 cut(s) 114
MscI TGGCCA 1 cut(s) 717
MseI TTAA 3 cut(s) 39, 83, 678
Msp20I TGGCCA 1 cut(s) 717
MspCI CTTAAG 1 cut(s) 38
MspI CCGG 3 cut(s) 458, 536, 698
MwoI GCNNNNNNNGC 4 cut(s) 487, 496, 760, 825
NdeI CATATG 1 cut(s) 286
NdeII GATC 2 cut(s) 214, 304
NlaIII CATG 4 cut(s) 402, 415, 568, 622
NlaIV GGNNCC 1 cut(s) 726
PaqCI CACCTGC 1 cut(s) 304
PciSI GCTCTTC 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 114
PflFI GACNNNGTC 1 cut(s) 647
PkrI GCNGC 4 cut(s) 418, 501, 753, 765
PleI GAGTC 5 cut(s) 42, 445, 469, 663, 698
PpsI GAGTC 5 cut(s) 42, 445, 469, 663, 698
PpuMI RGGWCCY 1 cut(s) 581
Psp124BI GAGCTC 2 cut(s) 260, 543
Psp5II RGGWCCY 1 cut(s) 581
PspFI CCCAGC 1 cut(s) 465
PspN4I GGNNCC 1 cut(s) 726
PspPI GGNCC 1 cut(s) 581
PspPPI RGGWCCY 1 cut(s) 581
PstI CTGCAG 1 cut(s) 666
PsyI GACNNNGTC 1 cut(s) 647
RsaI GTAC 2 cut(s) 180, 671
RsaNI GTAC 2 cut(s) 179, 670
SacI GAGCTC 2 cut(s) 260, 543
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 3 cut(s) 39, 83, 678
SatI GCNGC 4 cut(s) 417, 500, 752, 764
Sau3AI GATC 2 cut(s) 214, 304
Sau96I GGNCC 1 cut(s) 581
SchI GAGTC 5 cut(s) 43, 446, 470, 664, 699
SduI GDGCHC 5 cut(s) 93, 162, 260, 543, 727
SfaNI GCATC 2 cut(s) 135, 760
SfcI CTRYAG 2 cut(s) 662, 736
SinI GGWCC 1 cut(s) 581
SmlI CTYRAG 4 cut(s) 20, 38, 188, 585
SmoI CTYRAG 4 cut(s) 20, 38, 188, 585
Sse9I AATT 2 cut(s) 71, 122
SsiI CCGC 2 cut(s) 416, 819
SspMI CTAG 3 cut(s) 345, 434, 494
SstI GAGCTC 2 cut(s) 260, 543
TaaI ACNGT 2 cut(s) 782, 815
TaqI TCGA 2 cut(s) 627, 768
TasI AATT 2 cut(s) 71, 122
TatI WGTACW 2 cut(s) 178, 669
TauI GCSGC 1 cut(s) 419
Tru1I TTAA 3 cut(s) 39, 83, 678
Tru9I TTAA 3 cut(s) 39, 83, 678
TscAI CASTG 1 cut(s) 492
TseI GCWGC 3 cut(s) 499, 751, 763
TspGWI ACGGA 2 cut(s) 247, 258
TspRI CASTG 1 cut(s) 492
Tth111I GACNNNGTC 1 cut(s) 647
Vha464I CTTAAG 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 581
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 3 cut(s) 345, 434, 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.