pycom17g07030

S-adenosylmethionine decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0008254
Physical Location & Seq
Reverse (-)
5059577 .. 5060710
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1134 bp
ATGGCTGTACCAGTCTCTGCAATTGGATTTGAAGGCTATGAAAAGAGGCTCGAGGTCTCTTTCTTCGAGCCTGGACTGTTTGCTGACCCTAGAGGCATGGGTCTTCGTTCTCTATCGAAAGCTCAAATAGATGAGATTCTGACACCAGCTGAGTGCACCATTGTTTCTTCACTGTCGAATGATGATCTTGACTCTTACGTTCTATCCGAGTCGAGCCTCTTTGTGTACCCTTACAAAGTGATCATCAAAACCTGTGGCACAACGAAATTGCTTCGATCAATCCCTGCCATCCTCAAGCTGGCTGACTCCCTCTCTCTAGCTGTAAAATCTGTGAGGTACTCTCGTGGGAGCTTCATCTTTCCTGGTGCTCAGCCCTCTCCGCATCGTAGCTTTTCGGAGGAGGTAGCTGTACTTGACGGCCATTTTGGCAAGCTTGGTTTGGCAAGCAAGGCATATGTTATGGGAAGCCCTGACAAAACTCAGAAATGGCATATTTACTCTGCATCGGCGGAGCTGGCAAGCTTATTGTGGGGTTCACGCCACACAGGCCCAACCTACACTCTGGAGATGTGCATGACCGGTCTAGACAGGAAGAGGGCTTCTGTGTTTTACAAATCCAACGCAAGTTCAGCTGCTGGAATGACAGAAGAATCTGGCATCAGGAAGATCCTCCCACAATCCGATATATGCGACTTTGAGTTCGAACCTTGCGGTTACTCCATGAACTCAATTGAAGGCAATGCAGTTTCTACAATCCACGTGACACCAGAAGACGGTTTCAGCTACGCTAGCTTTGAAACGGTGGGATATAATTTCAATGATGTGAACTTGACCCAGCTGCTTTGCAGGGTTCTGGATTGCTTCAAACCAGCTGAGTTCTCCATAGCCTTGCACACCACCAGCACCGCAGGTGAAGATCTTGATGCTAAGTGCCCTCTGGACCTAAGGGGATGCTGCTGCGTCGGAAGCAGCTATGAGGGTCTAGGCCTGGGTGGTGCAGTCGTCTACCACAGCTTTGTCAAGGATAATTCTGGTTCGCAGTCTCCAAGGTCGATTCTGAAGTGCTGCTGGAGCGAGGACGAGAAGGACGAGAAGGACGAGGAAGTTGAAGAGATAGATCTGGCCGAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00330 ko01100 map00270 map00330 map01100
Pfam Domains
Protein Families
AdoMetDC_leader SAM_decarbox

Protein Analysis

378

Amino Acids

41.08

Weight (kDa)

4.89

Isoelectric Point (pI)

46.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_decarbox PF01536 9 - 339 2.7e-115 Adenosylmethionine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 899
Acc36I ACCTGC 1 cut(s) 899
AccI GTMKAC 1 cut(s) 1005
AciI CCGC 4 cut(s) 380, 509, 711, 906
AclWI GGATC 1 cut(s) 661
AcoI YGGCCR 2 cut(s) 418, 1122
AcuI CTGAAG 1 cut(s) 1079
AcvI CACGTG 1 cut(s) 760
AfaI GTAC 4 cut(s) 9, 227, 338, 411
AfiI CCNNNNNNNGG 2 cut(s) 298, 773
AgeI ACCGGT 1 cut(s) 578
AgsI TTSAA 6 cut(s) 32, 734, 797, 817, 865, 1109
AjnI CCWGG 3 cut(s) 70, 361, 987
Alw21I GWGCWC 2 cut(s) 158, 370
Alw26I GTCTC 3 cut(s) 19, 61, 1047
Alw44I GTGCAC 1 cut(s) 154
AlwI GGATC 1 cut(s) 661
AlwNI CAGNNNCTG 2 cut(s) 17, 635
Ama87I CYCGRG 1 cut(s) 50
AoxI GGCC 4 cut(s) 418, 547, 985, 1122
ApaLI GTGCAC 1 cut(s) 154
ApeKI GCWGC 6 cut(s) 632, 838, 954, 957, 969, 1065
ArsI GACNNNNNNTTYG 4 cut(s) 407, 439, 683, 715
AsiGI ACCGGT 1 cut(s) 578
AspS9I GGNCC 2 cut(s) 548, 940
AsuHPI GGTGA 1 cut(s) 923
AsuII TTCGAA 1 cut(s) 702
AsuNHI GCTAGC 1 cut(s) 788
AvaI CYCGRG 1 cut(s) 50
AvaII GGWCC 1 cut(s) 940
AxyI CCTNAGG 1 cut(s) 944
BaeGI GKGCMC 2 cut(s) 158, 935
BaeI ACNNNNGTAYC 2 cut(s) 328, 361
BauI CACGAG 1 cut(s) 342
BbrPI CACGTG 1 cut(s) 760
BbsI GAAGAC 2 cut(s) 95, 777
Bbv12I GWGCWC 2 cut(s) 158, 370
BbvI GCAGC 6 cut(s) 619, 825, 941, 944, 981, 1052
BccI CCATC 1 cut(s) 296
BceAI ACGGC 1 cut(s) 433
BciT130I CCWGG 3 cut(s) 72, 363, 989
BclI TGATCA 1 cut(s) 240
BcoDI GTCTC 3 cut(s) 19, 61, 1047
BfaI CTAG 6 cut(s) 90, 317, 584, 789, 983, 1132
BfuAI ACCTGC 1 cut(s) 899
BglI GCCNNNNNGGC 2 cut(s) 426, 546
BglII AGATCT 3 cut(s) 916, 1117, 1128
BisI GCNGC 6 cut(s) 633, 839, 955, 958, 970, 1066
BlpI GCTNAGC 1 cut(s) 369
BlsI GCNGC 6 cut(s) 634, 840, 956, 959, 971, 1067
Bme1390I CCNGG 3 cut(s) 72, 363, 989
Bme18I GGWCC 1 cut(s) 940
BmeT110I CYCGRG 1 cut(s) 50
BmgT120I GGNCC 2 cut(s) 548, 940
BmrFI CCNGG 3 cut(s) 72, 363, 989
BmsI GCATC 5 cut(s) 391, 512, 666, 913, 941
BmtI GCTAGC 1 cut(s) 792
BpiI GAAGAC 2 cut(s) 95, 777
BplI GAGNNNNNCTC 2 cut(s) 325, 357
BpmI CTGGAG 2 cut(s) 584, 1090
Bpu1102I GCTNAGC 1 cut(s) 369
Bpu14I TTCGAA 1 cut(s) 702
BpuEI CTTGAG 1 cut(s) 278
BsaAI YACGTR 1 cut(s) 760
BsaI GGTCTC 1 cut(s) 61
BsaJI CCNNGG 2 cut(s) 988, 1046
BsaWI WCCGGW 1 cut(s) 578
Bsc4I CCNNNNNNNGG 2 cut(s) 298, 773
Bse118I RCCGGY 1 cut(s) 578
Bse1I ACTGG 1 cut(s) 11
Bse21I CCTNAGG 1 cut(s) 944
Bse3DI GCAATG 1 cut(s) 745
BseBI CCWGG 3 cut(s) 72, 363, 989
BseDI CCNNGG 2 cut(s) 988, 1046
BseGI GGATG 2 cut(s) 288, 956
BseLI CCNNNNNNNGG 2 cut(s) 298, 773
BseMI GCAATG 1 cut(s) 745
BseMII CTCAG 4 cut(s) 141, 383, 494, 864
BseNI ACTGG 1 cut(s) 11
BseRI GAGGAG 1 cut(s) 413
BseSI GKGCMC 2 cut(s) 158, 935
BseXI GCAGC 6 cut(s) 619, 825, 941, 944, 981, 1052
BseYI CCCAGC 1 cut(s) 834
BsgI GTGCAG 1 cut(s) 1017
BshFI GGCC 4 cut(s) 420, 549, 987, 1124
BshTI ACCGGT 1 cut(s) 578
BsiHKAI GWGCWC 2 cut(s) 158, 370
BsiHKCI CYCGRG 1 cut(s) 50
BsiSI CCGG 1 cut(s) 579
BslI CCNNNNNNNGG 2 cut(s) 298, 773
BsmAI GTCTC 3 cut(s) 19, 61, 1047
BsnI GGCC 4 cut(s) 420, 549, 987, 1124
Bso31I GGTCTC 1 cut(s) 61
BsoBI CYCGRG 1 cut(s) 50
Bsp119I TTCGAA 1 cut(s) 702
Bsp1286I GDGCHC 3 cut(s) 158, 370, 935
Bsp143I GATC 7 cut(s) 184, 240, 275, 666, 916, 1117, 1128
Bsp1720I GCTNAGC 1 cut(s) 369
BspACI CCGC 4 cut(s) 380, 509, 711, 906
BspANI GGCC 4 cut(s) 420, 549, 987, 1124
BspCNI CTCAG 4 cut(s) 142, 382, 493, 865
BspMI ACCTGC 1 cut(s) 899
BspOI GCTAGC 1 cut(s) 792
BspPI GGATC 1 cut(s) 661
BspT104I TTCGAA 1 cut(s) 702
BspTNI GGTCTC 1 cut(s) 61
BsrDI GCAATG 1 cut(s) 745
BsrFI RCCGGY 1 cut(s) 578
BsrI ACTGG 1 cut(s) 11
BssAI RCCGGY 1 cut(s) 578
BssECI CCNNGG 2 cut(s) 988, 1046
BssMI GATC 7 cut(s) 184, 240, 275, 666, 916, 1117, 1128
BssSI CACGAG 1 cut(s) 342
BssT1I CCWWGG 1 cut(s) 1046
Bst2BI CACGAG 1 cut(s) 342
Bst2UI CCWGG 3 cut(s) 72, 363, 989
Bst4CI ACNGT 4 cut(s) 78, 174, 776, 802
Bst6I CTCTTC 2 cut(s) 587, 1104
BstBAI YACGTR 1 cut(s) 760
BstBI TTCGAA 1 cut(s) 702
BstC8I GCNNGC 6 cut(s) 300, 431, 445, 516, 520, 790
BstDEI CTNAG 6 cut(s) 150, 369, 480, 873, 927, 944
BstF5I GGATG 2 cut(s) 288, 956
BstKTI GATC 7 cut(s) 187, 243, 278, 669, 919, 1120, 1131
BstMAI GTCTC 3 cut(s) 19, 61, 1047
BstMBI GATC 7 cut(s) 184, 240, 275, 666, 916, 1117, 1128
BstMWI GCNNNNNNNGC 9 cut(s) 379, 426, 449, 515, 546, 629, 789, 966, 1071
BstNI CCWGG 3 cut(s) 72, 363, 989
BstSCI CCNGG 3 cut(s) 70, 361, 987
BstSLI GKGCMC 2 cut(s) 158, 935
BstV1I GCAGC 6 cut(s) 619, 825, 941, 944, 981, 1052
BstV2I GAAGAC 2 cut(s) 95, 777
BstX2I RGATCY 4 cut(s) 666, 916, 1117, 1128
BstYI RGATCY 4 cut(s) 666, 916, 1117, 1128
Bsu36I CCTNAGG 1 cut(s) 944
BsuRI GGCC 4 cut(s) 420, 549, 987, 1124
BtsCI GGATG 2 cut(s) 288, 956
BtsIMutI CAGTG 1 cut(s) 170
BveI ACCTGC 1 cut(s) 899
Cac8I GCNNGC 6 cut(s) 300, 431, 445, 516, 520, 790
CaiI CAGNNNCTG 2 cut(s) 17, 635
Cfr10I RCCGGY 1 cut(s) 578
Cfr13I GGNCC 2 cut(s) 548, 940
CseI GACGC 1 cut(s) 949
Csp6I GTAC 4 cut(s) 8, 226, 337, 410
CspAI ACCGGT 1 cut(s) 578
CspCI CAANNNNNGTGG 2 cut(s) 235, 270
CviAII CATG 3 cut(s) 97, 574, 721
CviQI GTAC 4 cut(s) 8, 226, 337, 410
DdeI CTNAG 6 cut(s) 150, 369, 480, 873, 927, 944
DpnI GATC 7 cut(s) 186, 242, 277, 668, 918, 1119, 1130
DpnII GATC 7 cut(s) 184, 240, 275, 666, 916, 1117, 1128
EaeI YGGCCR 2 cut(s) 418, 1122
Eam1104I CTCTTC 2 cut(s) 587, 1104
EarI CTCTTC 2 cut(s) 587, 1104
EciI GGCGGA 1 cut(s) 524
Eco130I CCWWGG 1 cut(s) 1046
Eco147I AGGCCT 1 cut(s) 987
Eco31I GGTCTC 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 940
Eco57I CTGAAG 1 cut(s) 1079
Eco72I CACGTG 1 cut(s) 760
Eco81I CCTNAGG 1 cut(s) 944
Eco88I CYCGRG 1 cut(s) 50
EcoRII CCWGG 3 cut(s) 70, 361, 987
EcoT14I CCWWGG 1 cut(s) 1046
ErhI CCWWGG 1 cut(s) 1046
FaeI CATG 3 cut(s) 100, 577, 724
FatI CATG 3 cut(s) 96, 573, 720
FauNDI CATATG 1 cut(s) 454
FbaI TGATCA 1 cut(s) 240
FblI GTMKAC 1 cut(s) 1005
Fnu4HI GCNGC 6 cut(s) 633, 839, 955, 958, 970, 1066
FokI GGATG 2 cut(s) 275, 963
Fsp4HI GCNGC 6 cut(s) 633, 839, 955, 958, 970, 1066
FspBI CTAG 6 cut(s) 90, 317, 584, 789, 983, 1132
GluI GCNGC 6 cut(s) 633, 839, 955, 958, 970, 1066
GsaI CCCAGC 1 cut(s) 838
GsuI CTGGAG 2 cut(s) 584, 1090
HaeIII GGCC 4 cut(s) 420, 549, 987, 1124
HapII CCGG 1 cut(s) 579
HgaI GACGC 1 cut(s) 949
Hin1II CATG 3 cut(s) 100, 577, 724
HindIII AAGCTT 2 cut(s) 431, 520
HinfI GANTC 6 cut(s) 136, 191, 209, 305, 650, 1054
HpaII CCGG 1 cut(s) 579
HphI GGTGA 1 cut(s) 923
Hpy166II GTNNAC 5 cut(s) 156, 226, 536, 826, 1006
Hpy188I TCNGA 7 cut(s) 141, 208, 397, 483, 682, 965, 1059
Hpy188III TCNNGA 7 cut(s) 188, 563, 584, 661, 854, 920, 938
Hpy8I GTNNAC 5 cut(s) 156, 226, 536, 826, 1006
Hpy99I CGWCG 1 cut(s) 965
HpyAV CCTTC 4 cut(s) 26, 728, 1078, 1087
HpyCH4III ACNGT 4 cut(s) 78, 174, 776, 802
HpyCH4IV ACGT 2 cut(s) 198, 759
HpyCH4V TGCA 8 cut(s) 20, 156, 503, 573, 743, 846, 892, 998
HpyF10VI GCNNNNNNNGC 9 cut(s) 379, 426, 449, 515, 546, 629, 789, 966, 1071
HpyF3I CTNAG 6 cut(s) 150, 369, 480, 873, 927, 944
HpySE526I ACGT 2 cut(s) 198, 759
Hsp92II CATG 3 cut(s) 100, 577, 724
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 7 cut(s) 184, 240, 275, 666, 916, 1117, 1128
LmnI GCTCC 3 cut(s) 348, 511, 1071
Lsp1109I GCAGC 6 cut(s) 619, 825, 941, 944, 981, 1052
LweI GCATC 5 cut(s) 391, 512, 666, 913, 941
MaeI CTAG 6 cut(s) 90, 317, 584, 789, 983, 1132
MaeII ACGT 2 cut(s) 198, 759
MaeIII GTNAC 2 cut(s) 713, 760
MalI GATC 7 cut(s) 186, 242, 277, 668, 918, 1119, 1130
MboI GATC 7 cut(s) 184, 240, 275, 666, 916, 1117, 1128
MboII GAAGA 9 cut(s) 55, 95, 159, 604, 659, 676, 782, 926, 1121
MfeI CAATTG 2 cut(s) 21, 729
MflI RGATCY 4 cut(s) 666, 916, 1117, 1128
MhlI GDGCHC 3 cut(s) 158, 370, 935
MluCI AATT 5 cut(s) 21, 266, 729, 811, 1027
MlyI GAGTC 3 cut(s) 185, 218, 299
MmeI TCCRAC 2 cut(s) 642, 943
MspA1I CMGCKG 4 cut(s) 149, 632, 838, 872
MspI CCGG 1 cut(s) 579
MspR9I CCNGG 3 cut(s) 72, 363, 989
MunI CAATTG 2 cut(s) 21, 729
MvaI CCWGG 3 cut(s) 72, 363, 989
MwoI GCNNNNNNNGC 9 cut(s) 379, 426, 449, 515, 546, 629, 789, 966, 1071
NdeI CATATG 1 cut(s) 454
NdeII GATC 7 cut(s) 184, 240, 275, 666, 916, 1117, 1128
NheI GCTAGC 1 cut(s) 788
NlaIII CATG 3 cut(s) 100, 577, 724
NmuCI GTSAC 1 cut(s) 760
NspV TTCGAA 1 cut(s) 702
PaeR7I CTCGAG 1 cut(s) 50
PaqCI CACCTGC 1 cut(s) 899
PceI AGGCCT 1 cut(s) 987
PcsI WCGNNNNNNNCGW 3 cut(s) 204, 1086, 1095
PfeI GAWTC 3 cut(s) 136, 650, 1054
PinAI ACCGGT 1 cut(s) 578
PkrI GCNGC 6 cut(s) 634, 840, 956, 959, 971, 1067
PleI GAGTC 3 cut(s) 185, 217, 299
PmaCI CACGTG 1 cut(s) 760
PmlI CACGTG 1 cut(s) 760
PpsI GAGTC 3 cut(s) 185, 217, 299
Ppu21I YACGTR 1 cut(s) 760
Psp6I CCWGG 3 cut(s) 70, 361, 987
PspCI CACGTG 1 cut(s) 760
PspFI CCCAGC 1 cut(s) 834
PspGI CCWGG 3 cut(s) 70, 361, 987
PspPI GGNCC 2 cut(s) 548, 940
PspXI VCTCGAGB 1 cut(s) 50
PstNI CAGNNNCTG 2 cut(s) 17, 635
PsuI RGATCY 4 cut(s) 666, 916, 1117, 1128
PvuII CAGCTG 4 cut(s) 149, 632, 838, 872
RsaI GTAC 4 cut(s) 9, 227, 338, 411
RsaNI GTAC 4 cut(s) 8, 226, 337, 410
SatI GCNGC 6 cut(s) 633, 839, 955, 958, 970, 1066
Sau3AI GATC 7 cut(s) 184, 240, 275, 666, 916, 1117, 1128
Sau96I GGNCC 2 cut(s) 548, 940
SchI GAGTC 3 cut(s) 185, 218, 299
ScrFI CCNGG 3 cut(s) 72, 363, 989
SduI GDGCHC 3 cut(s) 158, 370, 935
SfaNI GCATC 5 cut(s) 391, 512, 666, 913, 941
Sfr274I CTCGAG 1 cut(s) 50
SfuI TTCGAA 1 cut(s) 702
SinI GGWCC 1 cut(s) 940
SlaI CTCGAG 1 cut(s) 50
SmlI CTYRAG 2 cut(s) 50, 293
SmoI CTYRAG 2 cut(s) 50, 293
Sse9I AATT 5 cut(s) 21, 266, 729, 811, 1027
SseBI AGGCCT 1 cut(s) 987
SsiI CCGC 4 cut(s) 380, 509, 711, 906
SspMI CTAG 6 cut(s) 90, 317, 584, 789, 983, 1132
StuI AGGCCT 1 cut(s) 987
StyD4I CCNGG 3 cut(s) 70, 361, 987
StyI CCWWGG 1 cut(s) 1046
TaaI ACNGT 4 cut(s) 78, 174, 776, 802
TaiI ACGT 2 cut(s) 201, 762
TaqI TCGA 8 cut(s) 51, 66, 116, 176, 212, 274, 702, 1052
TasI AATT 5 cut(s) 21, 266, 729, 811, 1027
TatI WGTACW 1 cut(s) 409
TfiI GAWTC 3 cut(s) 136, 650, 1054
TscAI CASTG 1 cut(s) 177
TseFI GTSAC 1 cut(s) 760
TseI GCWGC 6 cut(s) 632, 838, 954, 957, 969, 1065
Tsp45I GTSAC 1 cut(s) 760
TspDTI ATGAA 3 cut(s) 54, 343, 737
TspRI CASTG 1 cut(s) 177
VneI GTGCAC 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 940
XbaI TCTAGA 1 cut(s) 583
XcmI CCANNNNNNNNNTGG 1 cut(s) 295
XhoI CTCGAG 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 1005
XspI CTAG 6 cut(s) 90, 317, 584, 789, 983, 1132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.