pycom17g07180

Protein trichome birefringence-like 19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0013701
Physical Location & Seq
Forward (+)
5167455 .. 5169032
1578 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1314 bp
ATGCCTCAACAAGAAAAGTGGCATCATAATTTGGGTGCCTCACAATTCTCCACCATGAAGTTTCAAGCCATTGGTCTGCCTAATGCAAAATACACACAACCAAACAACACCTACAAAAAAGGTATTCTTCTAGCCCTCACCTTGCTTCTGCTCACCACAATCCCTCTCTGTATAAACAATAGCACAACTTCTCCATTGCCATCTCCTAACAGCAACATTACCAGTGGATTAAAAACCCTAGAAGATGAAGACCAATGCCAAATATTTAGTGGGAGTTGGATTCCATATCCAGATGGACCTGCTTACTACACAAATGAAACTTGCAATTTGATCATTGATCAGCAGAATTGCATGAAGTTCGAGAGGCCCGACACGGAGTTCATGAAATGGAGGTGGAAGCCCAAAGATTGCGAGTTGCCATTGTTCGATGCTGCTCAGTTCTTGGAGCTTGTTAGAGGGAAGTCATTAGCATTTCTTGGTGATTCTGTAGGAAGGAATCAAATGCAGTCCTTGCTCTGCCTTTTGTCCAATGTGACTTATCCTGAGGACATTTCTCACATGTATTCAACAAACACAGATTACTTCAAGCGCTATGTCTACCATGACTACAACTTCACTATGGCAACTCTCTGGGCACCCTACTTGGTTAAATCTAGAGATGCCGACCCGAATGGCCACGACGTCAACAGCCTCATGAGCCTCTACTTAGACGAGCCCGATGAGGGATGGGAAACTGAGGTTGAAAATTTCGATTATGTCATTGTCTCTGCAGGGCAATGGTTCTTCCGGCCGCTGATATACTACGAAAATGGTCGCGTTATAGGGTGTCACAAGTGCGGACGGGACGACATGAAATCTTTTCTCACGTACTACGGGTACAAAAAAGCGTTCCGAACAGTGTTCAGGACCCTTCGGAACCTCAAAAACTACAAAGGGGTGACGTTTTTGAGGACGTTTTCTCCGTCACACTTCGAAAACGGGGCGTGGAACGAGGGAGGGAATTGTCCGAGGACGAGGCCTTTTAGCAAGGAAGAAATGAAGCTAGATGGGTACATATTGGAGATGTATTTGACACAAGTGGAGGAGCTTAAAGCAGCAGAAAAGAAAGGTATGAAAAGAGGCCTTGAATTTAGGTTAATGGATACAACCGAAGCTATGTTGCTGAGGCCTGATGGACATCCAAACTTCTACGGACACTCACCTCACCGGAACATGACTATTGCTGACTGTGTCCACTGGTGCTTGCCTGGCCCCATTGATACGTGGAATGAGATTTTGCTGTATATGTTGAAATCCGGGCACAAAACATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

438

Amino Acids

50.6

Weight (kDa)

6.32

Isoelectric Point (pI)

37.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 85 - 138 1.4e-18 PMR5 N terminal Domain
PC-Esterase PF13839 139 - 428 2.1e-93 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013701)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g45620
malus_domestica MD17G1072300.v1.1
prunus_persica Prupe.3G242400_v2.0.a1 Prupe.3G242900_v2.0.a1 Prupe.8G194900_v2.0.a1
pyrus_communis pycom09g00780 pycom17g07180 pycom17g07330
rosa_chinensis RchiOBHm_Chr2g0163771
rosa_laevigata RLG00000021414
rosa_multiflora Rmu_sc0004918.1_g000002
rosa_roxburghii Rroxscaffold_2G00087060
rosa_rugosa Rorug02G0504500
rosa_samantha Rh2AG572400 Rh2BG583000 Rh2CG553900 Rh2DG592700
rosa_wichuraiana Rw2G047310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 684
Acc36I ACCTGC 1 cut(s) 307
AccB1I GGYRCC 2 cut(s) 35, 634
AccI GTMKAC 1 cut(s) 597
AccII CGCG 1 cut(s) 816
AciI CCGC 2 cut(s) 791, 837
AcoI YGGCCR 2 cut(s) 673, 788
AcsI RAATTY 2 cut(s) 745, 1127
AcyI GRCGYC 1 cut(s) 681
AfaI GTAC 3 cut(s) 869, 878, 1052
AfeI AGCGCT 1 cut(s) 590
AfiI CCNNNNNNNGG 1 cut(s) 722
AflIII ACRYGT 1 cut(s) 558
AgsI TTSAA 6 cut(s) 65, 567, 586, 743, 1127, 1291
AjnI CCWGG 1 cut(s) 1246
AluBI AGCT 4 cut(s) 448, 1042, 1087, 1154
AluI AGCT 4 cut(s) 448, 1042, 1087, 1154
Alw26I GTCTC 1 cut(s) 769
Aor51HI AGCGCT 1 cut(s) 590
AoxI GGCC 7 cut(s) 365, 673, 788, 1016, 1120, 1166, 1249
ApeKI GCWGC 2 cut(s) 431, 1094
ApoI RAATTY 2 cut(s) 745, 1127
AspLEI GCGC 1 cut(s) 591
AspS9I GGNCC 4 cut(s) 296, 366, 906, 1250
AsuC2I CCSGG 1 cut(s) 1297
AsuHPI GGTGA 6 cut(s) 130, 145, 491, 949, 1191, 1196
AsuII TTCGAA 1 cut(s) 972
AvaII GGWCC 2 cut(s) 296, 906
AxyI CCTNAGG 1 cut(s) 543
BaeGI GKGCMC 2 cut(s) 637, 1302
BalI TGGCCA 1 cut(s) 675
BanI GGYRCC 2 cut(s) 35, 634
BanII GRGCYC 1 cut(s) 717
BbsI GAAGAC 1 cut(s) 255
BbvCI CCTCAGC 1 cut(s) 1163
BbvI GCAGC 2 cut(s) 418, 1106
BccI CCATC 5 cut(s) 208, 287, 720, 1040, 1166
BcgI CGANNNNNNTGC 2 cut(s) 340, 374
BciT130I CCWGG 1 cut(s) 1248
BciVI GTATCC 1 cut(s) 1135
BclI TGATCA 2 cut(s) 330, 337
BcnI CCSGG 1 cut(s) 1297
BcoDI GTCTC 1 cut(s) 769
BfaI CTAG 4 cut(s) 131, 239, 654, 1043
BfmI CTRYAG 2 cut(s) 486, 768
BfoI RGCGCY 1 cut(s) 592
BfuAI ACCTGC 1 cut(s) 307
BfuI GTATCC 1 cut(s) 1135
BisI GCNGC 3 cut(s) 432, 791, 1095
BlsI GCNGC 3 cut(s) 433, 792, 1096
Bme1390I CCNGG 2 cut(s) 1248, 1297
Bme18I GGWCC 2 cut(s) 296, 906
BmgT120I GGNCC 4 cut(s) 296, 366, 906, 1250
BmiI GGNNCC 5 cut(s) 37, 636, 908, 917, 1252
BmrFI CCNGG 2 cut(s) 1248, 1297
BmsI GCATC 3 cut(s) 31, 418, 649
BpiI GAAGAC 1 cut(s) 255
Bpu10I CCTNAGC 1 cut(s) 1163
Bpu14I TTCGAA 1 cut(s) 972
BpuMI CCSGG 1 cut(s) 1297
BsaAI YACGTR 2 cut(s) 867, 1263
BsaBI GATNNNNATC 1 cut(s) 1176
BsaHI GRCGYC 1 cut(s) 681
BsaJI CCNNGG 1 cut(s) 1007
BsaWI WCCGGW 1 cut(s) 1206
BsaXI ACNNNNNCTCC 4 cut(s) 175, 205, 943, 973
Bsc4I CCNNNNNNNGG 1 cut(s) 722
Bse1I ACTGG 2 cut(s) 222, 1241
Bse21I CCTNAGG 1 cut(s) 543
Bse3DI GCAATG 2 cut(s) 194, 782
Bse8I GATNNNNATC 1 cut(s) 1176
BseBI CCWGG 1 cut(s) 1248
BseDI CCNNGG 1 cut(s) 1007
BseGI GGATG 3 cut(s) 731, 1177, 1307
BseJI GATNNNNATC 1 cut(s) 1176
BseLI CCNNNNNNNGG 1 cut(s) 722
BseMI GCAATG 2 cut(s) 194, 782
BseMII CTCAG 4 cut(s) 449, 534, 726, 1154
BseNI ACTGG 2 cut(s) 222, 1241
BseRI GAGGAG 1 cut(s) 1097
BseSI GKGCMC 2 cut(s) 637, 1302
BseX3I CGGCCG 1 cut(s) 788
BseXI GCAGC 2 cut(s) 418, 1106
Bsh1236I CGCG 1 cut(s) 816
Bsh1285I CGRYCG 1 cut(s) 791
BshFI GGCC 7 cut(s) 367, 675, 790, 1018, 1122, 1168, 1251
BshNI GGYRCC 2 cut(s) 35, 634
BsiEI CGRYCG 1 cut(s) 791
BsiSI CCGG 3 cut(s) 787, 1207, 1296
BslFI GGGAC 1 cut(s) 857
BslI CCNNNNNNNGG 1 cut(s) 722
BsmAI GTCTC 1 cut(s) 769
BsmFI GGGAC 1 cut(s) 857
BsnI GGCC 7 cut(s) 367, 675, 790, 1018, 1122, 1168, 1251
Bsp119I TTCGAA 1 cut(s) 972
Bsp1286I GDGCHC 3 cut(s) 637, 717, 1302
Bsp143I GATC 2 cut(s) 330, 337
BspACI CCGC 2 cut(s) 791, 837
BspANI GGCC 7 cut(s) 367, 675, 790, 1018, 1122, 1168, 1251
BspCNI CTCAG 4 cut(s) 448, 535, 727, 1155
BspFNI CGCG 1 cut(s) 816
BspHI TCATGA 2 cut(s) 381, 693
BspLI GGNNCC 5 cut(s) 37, 636, 908, 917, 1252
BspMAI CTGCAG 1 cut(s) 772
BspMI ACCTGC 1 cut(s) 307
BspT104I TTCGAA 1 cut(s) 972
BspT107I GGYRCC 2 cut(s) 35, 634
BsrDI GCAATG 2 cut(s) 194, 782
BsrI ACTGG 2 cut(s) 222, 1241
BssECI CCNNGG 1 cut(s) 1007
BssMI GATC 2 cut(s) 330, 337
BssNI GRCGYC 1 cut(s) 681
Bst2UI CCWGG 1 cut(s) 1248
Bst4CI ACNGT 2 cut(s) 898, 1229
BstACI GRCGYC 1 cut(s) 681
BstAPI GCANNNNNTGC 1 cut(s) 511
BstBAI YACGTR 2 cut(s) 867, 1263
BstBI TTCGAA 1 cut(s) 972
BstC8I GCNNGC 1 cut(s) 1244
BstDEI CTNAG 5 cut(s) 435, 543, 706, 735, 1163
BstF5I GGATG 3 cut(s) 731, 1177, 1307
BstFNI CGCG 1 cut(s) 816
BstH2I RGCGCY 1 cut(s) 592
BstHHI GCGC 1 cut(s) 591
BstKTI GATC 2 cut(s) 333, 340
BstMAI GTCTC 1 cut(s) 769
BstMBI GATC 2 cut(s) 330, 337
BstMCI CGRYCG 1 cut(s) 791
BstMWI GCNNNNNNNGC 3 cut(s) 511, 696, 1248
BstNI CCWGG 1 cut(s) 1248
BstNSI RCATGY 1 cut(s) 562
BstSCI CCNGG 2 cut(s) 1246, 1295
BstSFI CTRYAG 2 cut(s) 486, 768
BstSLI GKGCMC 2 cut(s) 637, 1302
BstUI CGCG 1 cut(s) 816
BstV1I GCAGC 2 cut(s) 418, 1106
BstV2I GAAGAC 1 cut(s) 255
BstZI CGGCCG 1 cut(s) 788
Bsu36I CCTNAGG 1 cut(s) 543
BsuI GTATCC 1 cut(s) 1135
BsuRI GGCC 7 cut(s) 367, 675, 790, 1018, 1122, 1168, 1251
BtsCI GGATG 3 cut(s) 731, 1177, 1307
BtsIMutI CAGTG 3 cut(s) 229, 903, 1234
BveI ACCTGC 1 cut(s) 307
Cac8I GCNNGC 1 cut(s) 1244
CciI TCATGA 2 cut(s) 381, 693
CfoI GCGC 1 cut(s) 591
Cfr13I GGNCC 4 cut(s) 296, 366, 906, 1250
Csp6I GTAC 3 cut(s) 868, 877, 1051
CspCI CAANNNNNGTGG 1 cut(s) 34
CviAII CATG 8 cut(s) 55, 352, 382, 559, 602, 694, 850, 1213
CviQI GTAC 3 cut(s) 868, 877, 1051
DdeI CTNAG 5 cut(s) 435, 543, 706, 735, 1163
DpnI GATC 2 cut(s) 332, 339
DpnII GATC 2 cut(s) 330, 337
EaeI YGGCCR 2 cut(s) 673, 788
EagI CGGCCG 1 cut(s) 788
EclXI CGGCCG 1 cut(s) 788
Eco147I AGGCCT 3 cut(s) 1018, 1122, 1168
Eco24I GRGCYC 1 cut(s) 717
Eco47I GGWCC 2 cut(s) 296, 906
Eco47III AGCGCT 1 cut(s) 590
Eco52I CGGCCG 1 cut(s) 788
Eco81I CCTNAGG 1 cut(s) 543
EcoO109I RGGNCCY 1 cut(s) 906
EcoRII CCWGG 1 cut(s) 1246
EcoT38I GRGCYC 1 cut(s) 717
FaeI CATG 8 cut(s) 58, 355, 385, 562, 605, 697, 853, 1216
FalI AAGNNNNNCTT 2 cut(s) 111, 143
FaqI GGGAC 1 cut(s) 857
FatI CATG 8 cut(s) 54, 351, 381, 558, 601, 693, 849, 1212
FbaI TGATCA 2 cut(s) 330, 337
FblI GTMKAC 1 cut(s) 597
Fnu4HI GCNGC 3 cut(s) 432, 791, 1095
FokI GGATG 3 cut(s) 738, 1164, 1294
FriOI GRGCYC 1 cut(s) 717
Fsp4HI GCNGC 3 cut(s) 432, 791, 1095
FspBI CTAG 4 cut(s) 131, 239, 654, 1043
GlaI GCGC 1 cut(s) 590
GluI GCNGC 3 cut(s) 432, 791, 1095
HaeII RGCGCY 1 cut(s) 592
HaeIII GGCC 7 cut(s) 367, 675, 790, 1018, 1122, 1168, 1251
HapII CCGG 3 cut(s) 787, 1207, 1296
HhaI GCGC 1 cut(s) 591
Hin1I GRCGYC 1 cut(s) 681
Hin1II CATG 8 cut(s) 58, 355, 385, 562, 605, 697, 853, 1216
Hin6I GCGC 1 cut(s) 589
HinP1I GCGC 1 cut(s) 589
HincII GTYRAC 1 cut(s) 685
HindII GTYRAC 1 cut(s) 685
HinfI GANTC 3 cut(s) 280, 482, 496
HpaII CCGG 3 cut(s) 787, 1207, 1296
HphI GGTGA 6 cut(s) 130, 145, 491, 949, 1191, 1196
Hpy166II GTNNAC 3 cut(s) 598, 685, 1234
Hpy188I TCNGA 3 cut(s) 893, 915, 1008
Hpy188III TCNNGA 8 cut(s) 290, 361, 382, 542, 654, 694, 904, 1311
Hpy8I GTNNAC 3 cut(s) 598, 685, 1234
Hpy99I CGWCG 1 cut(s) 683
HpyAV CCTTC 2 cut(s) 486, 920
HpyCH4III ACNGT 2 cut(s) 898, 1229
HpyCH4IV ACGT 5 cut(s) 681, 866, 941, 953, 1262
HpyCH4V TGCA 5 cut(s) 86, 324, 351, 505, 770
HpyF10VI GCNNNNNNNGC 3 cut(s) 511, 696, 1248
HpyF3I CTNAG 5 cut(s) 435, 543, 706, 735, 1163
HpySE526I ACGT 5 cut(s) 681, 866, 941, 953, 1262
Hsp92I GRCGYC 1 cut(s) 681
Hsp92II CATG 8 cut(s) 58, 355, 385, 562, 605, 697, 853, 1216
HspAI GCGC 1 cut(s) 589
Ksp22I TGATCA 2 cut(s) 330, 337
Kzo9I GATC 2 cut(s) 330, 337
LmnI GCTCC 2 cut(s) 445, 1084
Lsp1109I GCAGC 2 cut(s) 418, 1106
LweI GCATC 3 cut(s) 31, 418, 649
MaeI CTAG 4 cut(s) 131, 239, 654, 1043
MaeII ACGT 5 cut(s) 681, 866, 941, 953, 1262
MaeIII GTNAC 4 cut(s) 532, 827, 937, 963
MalI GATC 2 cut(s) 332, 339
MboI GATC 2 cut(s) 330, 337
MboII GAAGA 5 cut(s) 119, 254, 260, 775, 1043
MhlI GDGCHC 3 cut(s) 637, 717, 1302
MlsI TGGCCA 1 cut(s) 675
MluCI AATT 7 cut(s) 28, 44, 325, 346, 745, 1000, 1127
MluNI TGGCCA 1 cut(s) 675
MmeI TCCRAC 1 cut(s) 257
Mox20I TGGCCA 1 cut(s) 675
MscI TGGCCA 1 cut(s) 675
MseI TTAA 4 cut(s) 230, 648, 1089, 1136
Msp20I TGGCCA 1 cut(s) 675
MspA1I CMGCKG 1 cut(s) 793
MspI CCGG 3 cut(s) 787, 1207, 1296
MspR9I CCNGG 2 cut(s) 1248, 1297
MvaI CCWGG 1 cut(s) 1248
MvnI CGCG 1 cut(s) 816
MwoI GCNNNNNNNGC 3 cut(s) 511, 696, 1248
NciI CCSGG 1 cut(s) 1297
NdeII GATC 2 cut(s) 330, 337
NlaIII CATG 8 cut(s) 58, 355, 385, 562, 605, 697, 853, 1216
NlaIV GGNNCC 5 cut(s) 37, 636, 908, 917, 1252
NmuCI GTSAC 4 cut(s) 532, 827, 937, 963
NspI RCATGY 1 cut(s) 562
NspV TTCGAA 1 cut(s) 972
PagI TCATGA 2 cut(s) 381, 693
PceI AGGCCT 3 cut(s) 1018, 1122, 1168
PciI ACATGT 1 cut(s) 558
PcsI WCGNNNNNNNCGW 2 cut(s) 366, 959
PfeI GAWTC 3 cut(s) 280, 482, 496
PflFI GACNNNGTC 1 cut(s) 1229
PkrI GCNGC 3 cut(s) 433, 792, 1096
Ppu21I YACGTR 2 cut(s) 867, 1263
PpuMI RGGWCCY 1 cut(s) 906
PscI ACATGT 1 cut(s) 558
Psp5II RGGWCCY 1 cut(s) 906
Psp6I CCWGG 1 cut(s) 1246
PspGI CCWGG 1 cut(s) 1246
PspN4I GGNNCC 5 cut(s) 37, 636, 908, 917, 1252
PspPI GGNCC 4 cut(s) 296, 366, 906, 1250
PspPPI RGGWCCY 1 cut(s) 906
PstI CTGCAG 1 cut(s) 772
PsyI GACNNNGTC 1 cut(s) 1229
RsaI GTAC 3 cut(s) 869, 878, 1052
RsaNI GTAC 3 cut(s) 868, 877, 1051
SaqAI TTAA 4 cut(s) 230, 648, 1089, 1136
SatI GCNGC 3 cut(s) 432, 791, 1095
Sau3AI GATC 2 cut(s) 330, 337
Sau96I GGNCC 4 cut(s) 296, 366, 906, 1250
ScrFI CCNGG 2 cut(s) 1248, 1297
SduI GDGCHC 3 cut(s) 637, 717, 1302
SfaNI GCATC 3 cut(s) 31, 418, 649
SfcI CTRYAG 2 cut(s) 486, 768
SfuI TTCGAA 1 cut(s) 972
SinI GGWCC 2 cut(s) 296, 906
Sse9I AATT 7 cut(s) 28, 44, 325, 346, 745, 1000, 1127
SseBI AGGCCT 3 cut(s) 1018, 1122, 1168
SsiI CCGC 2 cut(s) 791, 837
SspI AATATT 1 cut(s) 264
SspMI CTAG 4 cut(s) 131, 239, 654, 1043
StuI AGGCCT 3 cut(s) 1018, 1122, 1168
StyD4I CCNGG 2 cut(s) 1246, 1295
TaaI ACNGT 2 cut(s) 898, 1229
TaiI ACGT 5 cut(s) 684, 869, 944, 956, 1265
TaqI TCGA 4 cut(s) 360, 426, 750, 972
TasI AATT 7 cut(s) 28, 44, 325, 346, 745, 1000, 1127
TauI GCSGC 1 cut(s) 793
TfiI GAWTC 3 cut(s) 280, 482, 496
Tru1I TTAA 4 cut(s) 230, 648, 1089, 1136
Tru9I TTAA 4 cut(s) 230, 648, 1089, 1136
TscAI CASTG 3 cut(s) 229, 903, 1241
TseFI GTSAC 4 cut(s) 532, 827, 937, 963
TseI GCWGC 2 cut(s) 431, 1094
Tsp45I GTSAC 4 cut(s) 532, 827, 937, 963
TspDTI ATGAA 9 cut(s) 71, 261, 330, 368, 370, 398, 866, 1052, 1127
TspGWI ACGGA 3 cut(s) 389, 951, 1206
TspRI CASTG 3 cut(s) 229, 903, 1241
Tth111I GACNNNGTC 1 cut(s) 1229
VpaK11BI GGWCC 2 cut(s) 296, 906
XapI RAATTY 2 cut(s) 745, 1127
XbaI TCTAGA 1 cut(s) 653
XceI RCATGY 1 cut(s) 562
XcmI CCANNNNNNNNNTGG 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 597
XspI CTAG 4 cut(s) 131, 239, 654, 1043
ZraI GACGTC 1 cut(s) 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.