pycom17g07330

Protein trichome birefringence-like 19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0013701
Physical Location & Seq
Forward (+)
5279976 .. 5281503
1528 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1284 bp
ATGAATTCCTCACAATTCTCCACCATGAAGTCTCAAGCCATTGGTCTGCCTAATGCAAAATACACACAACCAAACAACACCTACAAAAAGGGTATTCTTCTAGCCCTCACCTTGCTTCTGCTCACCACAATCCCTCTCTGTATAAACAATAGCACAACTTCTCCATTGCCATCTCCTAACAGCAACATTACCAGTGGATTAAAAACCCTAGAAGATGAAGACCAATGCCAAATACTTAGTGGGAGTTGGATTCCATATCCAGATGGACCTGGTTACTACACAAATGAAACTTGCAATTTCATCATTGATCAGCAGAACTGCATGAAGTTCGGGAGGCCTGACGCGGAGTTCATGAAATGGAGGTGGAAGCCCGAAGATTGTGAGTTGCCATTGTTCGATTCTGCTCAGTTCTTGGAGCTTGTTAGAGGGACGTCATTAGCATTTCTTGGTGATTCTGTAGGAGGGAATCAAATGCAGTCCTTGCTCTGCCTTTTGTCCAATGTGACTTATCCTGAGGACATTTCTCGCAAGTATTCAACAAACACAGATTACTCCAAGCGCTATGTATACCATGACTACAACTTCACTATGGCATATTTCTGGGCACCCTACTTGGTTAAATCTAGAGATGCCGACCTGAATGGCCACGGCCTCAACAGCCTCACGAGTCTCTACTTAGACGAGCCCGACGAGAGATGGGAAACTGAGGTTGAAAATTTCGATTATGTCATCGTCTCAGGAGGGCAATGGTTCTTCCGGCCGCTGATATACTACGAAAATGGTCGCGTCATTGGGTGTCACAAGTGCGGACGAGACGACATGAAATCTTTTCTCACGTACTACGGGTACAAAAAAGCATTCCGAACAGTGTTTAGGACCCTTCGGAACCTCAAAAACTACAAGGGGGTGACGTTTTTGAGGACGTTTTCTCCGTCACACTTCGAAAACGGGGCGTGGAACGAGGGAGGGAATTGTCCGAGGACGAGGCCTTTTAGCAAGGAAGAAATTAAGCTAGATGGGTACACTTCGGAGATGTATTTGACACAAGTGGAGGAGCTAAAAGCAGCAGAAAAGAAAGGTATGAAAAGAGGCCTTGAATTTAGGTTAATGGATACAACCGAAGCTATGTTGCTGAGGCCTGATGGACATCCAAACTTCTACGGACACTCACCTCACCGGAACATGACTATTGCTGACTGTGTCCACTGGTGCTTGCCTGGCCCCATTGATACGTGGAATGAGATTTTGCTGTATATGTTGAAATCCGGGCACAAAACATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

428

Amino Acids

49.11

Weight (kDa)

6.33

Isoelectric Point (pI)

35.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 75 - 128 1.1e-18 PMR5 N terminal Domain
PC-Esterase PF13839 129 - 418 3.6e-91 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013701)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g45620
malus_domestica MD17G1072300.v1.1
prunus_persica Prupe.3G242400_v2.0.a1 Prupe.3G242900_v2.0.a1 Prupe.8G194900_v2.0.a1
pyrus_communis pycom09g00780 pycom17g07180 pycom17g07330
rosa_chinensis RchiOBHm_Chr2g0163771
rosa_laevigata RLG00000021414
rosa_multiflora Rmu_sc0004918.1_g000002
rosa_roxburghii Rroxscaffold_2G00087060
rosa_rugosa Rorug02G0504500
rosa_samantha Rh2AG572400 Rh2BG583000 Rh2CG553900 Rh2DG592700
rosa_wichuraiana Rw2G047310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 434
AccB1I GGYRCC 1 cut(s) 604
AccI GTMKAC 1 cut(s) 567
AccII CGCG 2 cut(s) 344, 786
AciI CCGC 3 cut(s) 344, 761, 807
AcoI YGGCCR 2 cut(s) 643, 758
AcsI RAATTY 3 cut(s) 4, 715, 1097
AcyI GRCGYC 1 cut(s) 431
AfaI GTAC 3 cut(s) 839, 848, 1022
AfeI AGCGCT 1 cut(s) 560
AgsI TTSAA 4 cut(s) 537, 713, 1097, 1261
AjnI CCWGG 2 cut(s) 268, 1216
AluBI AGCT 4 cut(s) 418, 1012, 1057, 1124
AluI AGCT 4 cut(s) 418, 1012, 1057, 1124
Alw26I GTCTC 4 cut(s) 36, 674, 739, 807
Aor51HI AGCGCT 1 cut(s) 560
AoxI GGCC 8 cut(s) 335, 643, 649, 758, 986, 1090, 1136, 1219
ApeKI GCWGC 1 cut(s) 1064
ApoI RAATTY 3 cut(s) 4, 715, 1097
AspLEI GCGC 1 cut(s) 561
AspS9I GGNCC 3 cut(s) 266, 876, 1220
AsuC2I CCSGG 1 cut(s) 1267
AsuHPI GGTGA 6 cut(s) 100, 115, 461, 919, 1161, 1166
AsuII TTCGAA 1 cut(s) 942
AvaII GGWCC 2 cut(s) 266, 876
AxyI CCTNAGG 1 cut(s) 513
BaeGI GKGCMC 2 cut(s) 607, 1272
BalI TGGCCA 1 cut(s) 645
BanI GGYRCC 1 cut(s) 604
BanII GRGCYC 1 cut(s) 687
BauI CACGAG 1 cut(s) 664
BbsI GAAGAC 1 cut(s) 225
BbvCI CCTCAGC 1 cut(s) 1133
BbvI GCAGC 1 cut(s) 1076
BccI CCATC 5 cut(s) 178, 257, 690, 1010, 1136
BceAI ACGGC 1 cut(s) 664
BcgI CGANNNNNNTGC 2 cut(s) 310, 344
BciT130I CCWGG 2 cut(s) 270, 1218
BciVI GTATCC 1 cut(s) 1105
BclI TGATCA 1 cut(s) 307
BcnI CCSGG 1 cut(s) 1267
BcoDI GTCTC 4 cut(s) 36, 674, 739, 807
BfaI CTAG 4 cut(s) 101, 209, 624, 1013
BfmI CTRYAG 1 cut(s) 456
BfoI RGCGCY 1 cut(s) 562
BfuI GTATCC 1 cut(s) 1105
BisI GCNGC 2 cut(s) 761, 1065
BlsI GCNGC 2 cut(s) 762, 1066
Bme1390I CCNGG 3 cut(s) 270, 1218, 1267
Bme18I GGWCC 2 cut(s) 266, 876
BmgT120I GGNCC 3 cut(s) 266, 876, 1220
BmiI GGNNCC 4 cut(s) 606, 878, 887, 1222
BmrFI CCNGG 3 cut(s) 270, 1218, 1267
BmsI GCATC 1 cut(s) 619
BpiI GAAGAC 1 cut(s) 225
Bpu10I CCTNAGC 1 cut(s) 1133
Bpu14I TTCGAA 1 cut(s) 942
BpuEI CTTGAG 1 cut(s) 18
BpuMI CCSGG 1 cut(s) 1267
BsaAI YACGTR 2 cut(s) 837, 1233
BsaBI GATNNNNATC 1 cut(s) 1146
BsaHI GRCGYC 1 cut(s) 431
BsaJI CCNNGG 2 cut(s) 646, 977
BsaWI WCCGGW 1 cut(s) 1176
BsaXI ACNNNNNCTCC 4 cut(s) 145, 175, 913, 943
Bse1I ACTGG 2 cut(s) 192, 1211
Bse21I CCTNAGG 1 cut(s) 513
Bse3DI GCAATG 2 cut(s) 164, 752
Bse8I GATNNNNATC 1 cut(s) 1146
BseBI CCWGG 2 cut(s) 270, 1218
BseDI CCNNGG 2 cut(s) 646, 977
BseGI GGATG 2 cut(s) 1147, 1277
BseJI GATNNNNATC 1 cut(s) 1146
BseMI GCAATG 2 cut(s) 164, 752
BseMII CTCAG 5 cut(s) 419, 504, 696, 750, 1124
BseNI ACTGG 2 cut(s) 192, 1211
BseRI GAGGAG 1 cut(s) 1067
BseSI GKGCMC 2 cut(s) 607, 1272
BseX3I CGGCCG 1 cut(s) 758
BseXI GCAGC 1 cut(s) 1076
Bsh1236I CGCG 2 cut(s) 344, 786
Bsh1285I CGRYCG 1 cut(s) 761
BshFI GGCC 8 cut(s) 337, 645, 651, 760, 988, 1092, 1138, 1221
BshNI GGYRCC 1 cut(s) 604
BsiEI CGRYCG 1 cut(s) 761
BsiSI CCGG 3 cut(s) 757, 1177, 1266
BslFI GGGAC 1 cut(s) 442
BsmAI GTCTC 4 cut(s) 36, 674, 739, 807
BsmBI CGTCTC 2 cut(s) 739, 807
BsmFI GGGAC 1 cut(s) 442
BsmI GAATGC 1 cut(s) 857
BsnI GGCC 8 cut(s) 337, 645, 651, 760, 988, 1092, 1138, 1221
Bsp119I TTCGAA 1 cut(s) 942
Bsp1286I GDGCHC 3 cut(s) 607, 687, 1272
Bsp143I GATC 1 cut(s) 307
BspACI CCGC 3 cut(s) 344, 761, 807
BspANI GGCC 8 cut(s) 337, 645, 651, 760, 988, 1092, 1138, 1221
BspCNI CTCAG 5 cut(s) 418, 505, 697, 749, 1125
BspFNI CGCG 2 cut(s) 344, 786
BspHI TCATGA 1 cut(s) 351
BspLI GGNNCC 4 cut(s) 606, 878, 887, 1222
BspT104I TTCGAA 1 cut(s) 942
BspT107I GGYRCC 1 cut(s) 604
BsrDI GCAATG 2 cut(s) 164, 752
BsrI ACTGG 2 cut(s) 192, 1211
BssECI CCNNGG 2 cut(s) 646, 977
BssMI GATC 1 cut(s) 307
BssNAI GTATAC 1 cut(s) 568
BssNI GRCGYC 1 cut(s) 431
BssSI CACGAG 1 cut(s) 664
Bst1107I GTATAC 1 cut(s) 568
Bst2BI CACGAG 1 cut(s) 664
Bst2UI CCWGG 2 cut(s) 270, 1218
Bst4CI ACNGT 2 cut(s) 868, 1199
BstACI GRCGYC 1 cut(s) 431
BstAPI GCANNNNNTGC 1 cut(s) 481
BstBAI YACGTR 2 cut(s) 837, 1233
BstBI TTCGAA 1 cut(s) 942
BstC8I GCNNGC 1 cut(s) 1214
BstDEI CTNAG 7 cut(s) 236, 405, 513, 676, 705, 736, 1133
BstDSI CCRYGG 1 cut(s) 646
BstF5I GGATG 2 cut(s) 1147, 1277
BstFNI CGCG 2 cut(s) 344, 786
BstH2I RGCGCY 1 cut(s) 562
BstHHI GCGC 1 cut(s) 561
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 4 cut(s) 36, 674, 739, 807
BstMBI GATC 1 cut(s) 307
BstMCI CGRYCG 1 cut(s) 761
BstMWI GCNNNNNNNGC 3 cut(s) 481, 657, 1218
BstNI CCWGG 2 cut(s) 270, 1218
BstSCI CCNGG 3 cut(s) 268, 1216, 1265
BstSFI CTRYAG 1 cut(s) 456
BstSLI GKGCMC 2 cut(s) 607, 1272
BstUI CGCG 2 cut(s) 344, 786
BstV1I GCAGC 1 cut(s) 1076
BstV2I GAAGAC 1 cut(s) 225
BstZ17I GTATAC 1 cut(s) 568
BstZI CGGCCG 1 cut(s) 758
Bsu36I CCTNAGG 1 cut(s) 513
BsuI GTATCC 1 cut(s) 1105
BsuRI GGCC 8 cut(s) 337, 645, 651, 760, 988, 1092, 1138, 1221
BtgI CCRYGG 1 cut(s) 646
BtsCI GGATG 2 cut(s) 1147, 1277
BtsIMutI CAGTG 3 cut(s) 199, 873, 1204
Cac8I GCNNGC 1 cut(s) 1214
CciI TCATGA 1 cut(s) 351
CfoI GCGC 1 cut(s) 561
Cfr13I GGNCC 3 cut(s) 266, 876, 1220
CseI GACGC 2 cut(s) 350, 775
CsiI ACCWGGT 1 cut(s) 268
Csp6I GTAC 3 cut(s) 838, 847, 1021
CviAII CATG 6 cut(s) 25, 322, 352, 572, 820, 1183
CviQI GTAC 3 cut(s) 838, 847, 1021
DdeI CTNAG 7 cut(s) 236, 405, 513, 676, 705, 736, 1133
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
EaeI YGGCCR 2 cut(s) 643, 758
EagI CGGCCG 1 cut(s) 758
EclXI CGGCCG 1 cut(s) 758
Eco147I AGGCCT 4 cut(s) 337, 988, 1092, 1138
Eco24I GRGCYC 1 cut(s) 687
Eco47I GGWCC 2 cut(s) 266, 876
Eco47III AGCGCT 1 cut(s) 560
Eco52I CGGCCG 1 cut(s) 758
Eco81I CCTNAGG 1 cut(s) 513
EcoO109I RGGNCCY 1 cut(s) 876
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 268, 1216
EcoT38I GRGCYC 1 cut(s) 687
Esp3I CGTCTC 2 cut(s) 739, 807
FaeI CATG 6 cut(s) 28, 325, 355, 575, 823, 1186
FaqI GGGAC 1 cut(s) 442
FatI CATG 6 cut(s) 24, 321, 351, 571, 819, 1182
FbaI TGATCA 1 cut(s) 307
FblI GTMKAC 1 cut(s) 567
Fnu4HI GCNGC 2 cut(s) 761, 1065
FokI GGATG 2 cut(s) 1134, 1264
FriOI GRGCYC 1 cut(s) 687
Fsp4HI GCNGC 2 cut(s) 761, 1065
FspBI CTAG 4 cut(s) 101, 209, 624, 1013
GlaI GCGC 1 cut(s) 560
GluI GCNGC 2 cut(s) 761, 1065
HaeII RGCGCY 1 cut(s) 562
HaeIII GGCC 8 cut(s) 337, 645, 651, 760, 988, 1092, 1138, 1221
HapII CCGG 3 cut(s) 757, 1177, 1266
HgaI GACGC 2 cut(s) 350, 775
HhaI GCGC 1 cut(s) 561
Hin1I GRCGYC 1 cut(s) 431
Hin1II CATG 6 cut(s) 28, 325, 355, 575, 823, 1186
Hin6I GCGC 1 cut(s) 559
HinP1I GCGC 1 cut(s) 559
HinfI GANTC 5 cut(s) 250, 398, 452, 466, 667
HpaII CCGG 3 cut(s) 757, 1177, 1266
HphI GGTGA 6 cut(s) 100, 115, 461, 919, 1161, 1166
Hpy166II GTNNAC 3 cut(s) 568, 1023, 1204
Hpy188I TCNGA 4 cut(s) 863, 885, 978, 1030
Hpy188III TCNNGA 8 cut(s) 260, 331, 352, 512, 624, 664, 738, 1281
Hpy8I GTNNAC 3 cut(s) 568, 1023, 1204
Hpy99I CGWCG 1 cut(s) 692
HpyAV CCTTC 1 cut(s) 890
HpyCH4III ACNGT 2 cut(s) 868, 1199
HpyCH4IV ACGT 5 cut(s) 431, 836, 911, 923, 1232
HpyCH4V TGCA 4 cut(s) 56, 294, 321, 475
HpyF10VI GCNNNNNNNGC 3 cut(s) 481, 657, 1218
HpyF3I CTNAG 7 cut(s) 236, 405, 513, 676, 705, 736, 1133
HpySE526I ACGT 5 cut(s) 431, 836, 911, 923, 1232
Hsp92I GRCGYC 1 cut(s) 431
Hsp92II CATG 6 cut(s) 28, 325, 355, 575, 823, 1186
HspAI GCGC 1 cut(s) 559
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 1 cut(s) 307
LmnI GCTCC 2 cut(s) 415, 1054
Lsp1109I GCAGC 1 cut(s) 1076
LweI GCATC 1 cut(s) 619
MabI ACCWGGT 1 cut(s) 268
MaeI CTAG 4 cut(s) 101, 209, 624, 1013
MaeII ACGT 5 cut(s) 431, 836, 911, 923, 1232
MaeIII GTNAC 5 cut(s) 272, 502, 797, 907, 933
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 6 cut(s) 89, 224, 230, 386, 745, 1013
MhlI GDGCHC 3 cut(s) 607, 687, 1272
MlsI TGGCCA 1 cut(s) 645
MluCI AATT 7 cut(s) 4, 14, 295, 715, 970, 1005, 1097
MluNI TGGCCA 1 cut(s) 645
MlyI GAGTC 1 cut(s) 676
MmeI TCCRAC 1 cut(s) 227
Mox20I TGGCCA 1 cut(s) 645
MscI TGGCCA 1 cut(s) 645
MseI TTAA 4 cut(s) 200, 618, 1008, 1106
Msp20I TGGCCA 1 cut(s) 645
MspA1I CMGCKG 1 cut(s) 763
MspI CCGG 3 cut(s) 757, 1177, 1266
MspR9I CCNGG 3 cut(s) 270, 1218, 1267
Mva1269I GAATGC 1 cut(s) 857
MvaI CCWGG 2 cut(s) 270, 1218
MvnI CGCG 2 cut(s) 344, 786
MwoI GCNNNNNNNGC 3 cut(s) 481, 657, 1218
NciI CCSGG 1 cut(s) 1267
NdeII GATC 1 cut(s) 307
NlaIII CATG 6 cut(s) 28, 325, 355, 575, 823, 1186
NlaIV GGNNCC 4 cut(s) 606, 878, 887, 1222
NmuCI GTSAC 4 cut(s) 502, 797, 907, 933
NspV TTCGAA 1 cut(s) 942
PagI TCATGA 1 cut(s) 351
PceI AGGCCT 4 cut(s) 337, 988, 1092, 1138
PcsI WCGNNNNNNNCGW 2 cut(s) 687, 929
PctI GAATGC 1 cut(s) 857
PfeI GAWTC 4 cut(s) 250, 398, 452, 466
PflFI GACNNNGTC 1 cut(s) 1199
PkrI GCNGC 2 cut(s) 762, 1066
PleI GAGTC 1 cut(s) 675
PpsI GAGTC 1 cut(s) 675
Ppu21I YACGTR 2 cut(s) 837, 1233
PpuMI RGGWCCY 1 cut(s) 876
Psp5II RGGWCCY 1 cut(s) 876
Psp6I CCWGG 2 cut(s) 268, 1216
PspGI CCWGG 2 cut(s) 268, 1216
PspN4I GGNNCC 4 cut(s) 606, 878, 887, 1222
PspPI GGNCC 3 cut(s) 266, 876, 1220
PspPPI RGGWCCY 1 cut(s) 876
PsyI GACNNNGTC 1 cut(s) 1199
RsaI GTAC 3 cut(s) 839, 848, 1022
RsaNI GTAC 3 cut(s) 838, 847, 1021
SaqAI TTAA 4 cut(s) 200, 618, 1008, 1106
SatI GCNGC 2 cut(s) 761, 1065
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 3 cut(s) 266, 876, 1220
SchI GAGTC 1 cut(s) 676
ScrFI CCNGG 3 cut(s) 270, 1218, 1267
SduI GDGCHC 3 cut(s) 607, 687, 1272
SexAI ACCWGGT 1 cut(s) 268
SfaNI GCATC 1 cut(s) 619
SfcI CTRYAG 1 cut(s) 456
SfuI TTCGAA 1 cut(s) 942
SinI GGWCC 2 cut(s) 266, 876
SmlI CTYRAG 1 cut(s) 33
SmoI CTYRAG 1 cut(s) 33
Sse9I AATT 7 cut(s) 4, 14, 295, 715, 970, 1005, 1097
SseBI AGGCCT 4 cut(s) 337, 988, 1092, 1138
SsiI CCGC 3 cut(s) 344, 761, 807
SspMI CTAG 4 cut(s) 101, 209, 624, 1013
StuI AGGCCT 4 cut(s) 337, 988, 1092, 1138
StyD4I CCNGG 3 cut(s) 268, 1216, 1265
TaaI ACNGT 2 cut(s) 868, 1199
TaiI ACGT 5 cut(s) 434, 839, 914, 926, 1235
TaqI TCGA 3 cut(s) 396, 720, 942
TasI AATT 7 cut(s) 4, 14, 295, 715, 970, 1005, 1097
TauI GCSGC 1 cut(s) 763
TfiI GAWTC 4 cut(s) 250, 398, 452, 466
Tru1I TTAA 4 cut(s) 200, 618, 1008, 1106
Tru9I TTAA 4 cut(s) 200, 618, 1008, 1106
TscAI CASTG 3 cut(s) 199, 873, 1211
TseFI GTSAC 4 cut(s) 502, 797, 907, 933
TseI GCWGC 1 cut(s) 1064
Tsp45I GTSAC 4 cut(s) 502, 797, 907, 933
TspGWI ACGGA 2 cut(s) 921, 1176
TspRI CASTG 3 cut(s) 199, 873, 1211
Tth111I GACNNNGTC 1 cut(s) 1199
VpaK11BI GGWCC 2 cut(s) 266, 876
XapI RAATTY 3 cut(s) 4, 715, 1097
XbaI TCTAGA 1 cut(s) 623
XcmI CCANNNNNNNNNTGG 1 cut(s) 236
XmiI GTMKAC 1 cut(s) 567
XspI CTAG 4 cut(s) 101, 209, 624, 1013
ZraI GACGTC 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.