Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0012643

Physical Location & Seq

Genomic Coordinates Reverse (-)

6831643 .. 6834394

Gene Structure 2752 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGTCCCGAAAAATCGGAAGTCTTCGATGTTTGATTGTGATTCATTTGTTGCTCAACCAAGGGCTCAAACTTCTGGAACAGATGATATCGAAATGGGAAGGCCAGTGCCACATAGCTATTCCGATGCGGGGATGGATGCTTTCAATAAGCAGATACAAGAGGTTGAGAAACAGGTGGATAAGCTCTCTGGGCTTCTTAAAAAACTTAAGGATGCAAATGAGGAGTCGAAATCTGTTACAAAAGCATCTGCCATGAAAGGAATAAAAAAGCGGATGGAAAAAGATATTGATGAAGTAGGAAAGATTGCACGTGGTGTCAAAGCGAAAATAGAAGCAATAAGCAAAGATAACTTAGCCAACCGACAAAAACCTGGATGTGAGAAGGGAACTGGTGTTGATAGATCACGTATGAACATGACAAATTCGTTGACAAAAAAGTTTAGGGAGATAATGGTCGAGTTTCAGACCCTCAGACAACGAATCCAAGATGAATATCGTGAGGTTGTGGAGAGAAGAGTCATTACAGTTACGGGAACCAGACCAGATGAAGAGACAATTGACAACCTAATAGAAACTGGAAATAGTGAGCAAATATTCCAAAAGGCAGTTCAAGAACAGGGACGAGGACAGGTACTAAGTACAGTGGAAGAAATTCAAGAGAGGCATGACGCCGTGAAGGAAATTGAGAAAAAGCTTCTTGACTTGCATCAGATCTACCTCGATATGGCAGTCTTGGTCGATGCTCAAGGAGAGATTTTAGACAATATCGAAACTCAGGTTACAAATGCAGTCGATCGATGTTCAATCTGGGAACACTGCGCTTCAAAAAGCAAAGAAACTCCAGAAGAACTCCCGAAAATGGATGTGCATTGCAATCATTATTCTATTAATAATAGTAGCTATAATAGTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

305

Amino Acids

34.52

Weight (kDa)

5.98

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	43 - 203	5.2e-51	Syntaxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012643)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43430 FvH4_6g43430 FvH4_6g43430 FvH4_6g43430
malus_domestica	MD09G1106700.v1.1
prunus_persica	Prupe.3G218900_v2.0.a1 Prupe.3G218900_v2.0.a1
pyrus_communis	pycom09g02930 pycom17g09110
rosa_chinensis	RchiOBHm_Chr2g0159801
rosa_laevigata	RLG00000021182
rosa_multiflora	Rmu_sc0002508.1_g000006 Rmu_sc0016393.1_g000005
rosa_roxburghii	Rroxscaffold_2G00090230
rosa_rugosa	Rorug02G0478700 Rorug02G0478800
rosa_samantha	Rh2BG558400 Rh2DG567500
rosa_wichuraiana	Rw2G045090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	128, 271
AcsI	RAATTY	2 cut(s)	421, 651
AcvI	CACGTG	1 cut(s)	311
AcyI	GRCGYC	1 cut(s)	669
AdeI	CACNNNGTG	1 cut(s)	314
AfaI	GTAC	2 cut(s)	633, 640
AfiI	CCNNNNNNNGG	3 cut(s)	129, 724, 859
AflII	CTTAAG	1 cut(s)	206
AgsI	TTSAA	5 cut(s)	145, 611, 656, 804, 825
AjnI	CCWGG	1 cut(s)	370
AjuI	GAANNNNNNNTTGG	2 cut(s)	591, 623
AluBI	AGCT	4 cut(s)	117, 184, 694, 900
AluI	AGCT	4 cut(s)	117, 184, 694, 900
Alw26I	GTCTC	1 cut(s)	545
AoxI	GGCC	1 cut(s)	101
ApoI	RAATTY	2 cut(s)	421, 651
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AseI	ATTAAT	1 cut(s)	888
Asp700I	GAANNNNTTC	1 cut(s)	651
AspLEI	GCGC	1 cut(s)	821
AspS9I	GGNCC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	67
BarI	GAAGNNNNNNTAC	2 cut(s)	505, 537
BbrPI	CACGTG	1 cut(s)	311
BbsI	GAAGAC	1 cut(s)	15
BccI	CCATC	2 cut(s)	127, 268
BceAI	ACGGC	1 cut(s)	656
BciT130I	CCWGG	1 cut(s)	372
BcoDI	GTCTC	1 cut(s)	545
BfrI	CTTAAG	1 cut(s)	206
BglII	AGATCT	1 cut(s)	711
Bme1390I	CCNGG	1 cut(s)	372
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	6, 535
BmrFI	CCNGG	1 cut(s)	372
BmsI	GCATC	6 cut(s)	115, 127, 202, 254, 715, 730
BpiI	GAAGAC	1 cut(s)	15
BpmI	CTGGAG	1 cut(s)	825
BpuEI	CTTGAG	1 cut(s)	729
Bsa29I	ATCGAT	1 cut(s)	796
BsaAI	YACGTR	2 cut(s)	311, 407
BsaBI	GATNNNNATC	1 cut(s)	492
BsaHI	GRCGYC	1 cut(s)	669
BsaJI	CCNNGG	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	3 cut(s)	129, 724, 859
Bse1I	ACTGG	3 cut(s)	104, 394, 580
Bse3DI	GCAATG	1 cut(s)	868
Bse8I	GATNNNNATC	1 cut(s)	492
BseBI	CCWGG	1 cut(s)	372
BseCI	ATCGAT	1 cut(s)	796
BseDI	CCNNGG	1 cut(s)	59
BseGI	GGATG	6 cut(s)	138, 142, 217, 279, 380, 868
BseJI	GATNNNNATC	1 cut(s)	492
BseLI	CCNNNNNNNGG	3 cut(s)	129, 724, 859
BseMI	GCAATG	1 cut(s)	868
BseMII	CTCAG	2 cut(s)	484, 788
BseNI	ACTGG	3 cut(s)	104, 394, 580
BseRI	GAGGAG	1 cut(s)	236
Bsh1285I	CGRYCG	1 cut(s)	796
BshFI	GGCC	1 cut(s)	103
BshVI	ATCGAT	1 cut(s)	796
BsiEI	CGRYCG	1 cut(s)	796
BslFI	GGGAC	1 cut(s)	633
BslI	CCNNNNNNNGG	3 cut(s)	129, 724, 859
BsmAI	GTCTC	1 cut(s)	545
BsmFI	GGGAC	1 cut(s)	633
BsnI	GGCC	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	3 cut(s)	401, 711, 793
BspACI	CCGC	2 cut(s)	128, 271
BspANI	GGCC	1 cut(s)	103
BspCNI	CTCAG	2 cut(s)	483, 787
BspDI	ATCGAT	1 cut(s)	796
BspLI	GGNNCC	2 cut(s)	6, 535
BspTI	CTTAAG	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	868
BsrI	ACTGG	3 cut(s)	104, 394, 580
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	3 cut(s)	401, 711, 793
BssNI	GRCGYC	1 cut(s)	669
BssT1I	CCWWGG	1 cut(s)	59
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	2 cut(s)	526, 643
Bst6I	CTCTTC	2 cut(s)	508, 543
BstACI	GRCGYC	1 cut(s)	669
BstAFI	CTTAAG	1 cut(s)	206
BstBAI	YACGTR	2 cut(s)	311, 407
BstDEI	CTNAG	4 cut(s)	352, 470, 635, 774
BstF5I	GGATG	6 cut(s)	138, 142, 217, 279, 380, 868
BstHHI	GCGC	1 cut(s)	821
BstKTI	GATC	3 cut(s)	404, 714, 796
BstMAI	GTCTC	1 cut(s)	545
BstMBI	GATC	3 cut(s)	401, 711, 793
BstMCI	CGRYCG	1 cut(s)	796
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	370
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	1 cut(s)	711
BstYI	RGATCY	1 cut(s)	711
Bsu15I	ATCGAT	1 cut(s)	796
BsuRI	GGCC	1 cut(s)	103
BsuTUI	ATCGAT	1 cut(s)	796
BtsCI	GGATG	6 cut(s)	138, 142, 217, 279, 380, 868
BtsI	GCAGTG	1 cut(s)	814
BtsIMutI	CAGTG	3 cut(s)	111, 648, 814
CfoI	GCGC	1 cut(s)	821
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	796
CseI	GACGC	1 cut(s)	677
Csp6I	GTAC	2 cut(s)	632, 639
CviAII	CATG	3 cut(s)	253, 415, 665
CviJI	RGCY	8 cut(s)	65, 103, 117, 184, 193, 356, 694, 900
CviKI_1	RGCY	8 cut(s)	65, 103, 117, 184, 193, 356, 694, 900
CviQI	GTAC	2 cut(s)	632, 639
DdeI	CTNAG	4 cut(s)	352, 470, 635, 774
DpnI	GATC	3 cut(s)	403, 713, 795
DpnII	GATC	3 cut(s)	401, 711, 793
DraIII	CACNNNGTG	1 cut(s)	314
Eam1104I	CTCTTC	2 cut(s)	508, 543
EarI	CTCTTC	2 cut(s)	508, 543
Eco130I	CCWWGG	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	67
Eco32I	GATATC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	4
Eco72I	CACGTG	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	370
EcoRV	GATATC	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	59
EcoT38I	GRGCYC	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	59
FaeI	CATG	3 cut(s)	256, 418, 668
FaiI	YATR	7 cut(s)	114, 254, 410, 416, 666, 725, 903
FaqI	GGGAC	1 cut(s)	633
FatI	CATG	3 cut(s)	252, 414, 664
FauI	CCCGC	1 cut(s)	121
FokI	GGATG	6 cut(s)	145, 149, 224, 286, 387, 875
FriOI	GRGCYC	1 cut(s)	67
GlaI	GCGC	1 cut(s)	820
GsuI	CTGGAG	1 cut(s)	825
HaeIII	GGCC	1 cut(s)	103
HgaI	GACGC	1 cut(s)	677
HhaI	GCGC	1 cut(s)	821
Hin1I	GRCGYC	1 cut(s)	669
Hin1II	CATG	3 cut(s)	256, 418, 668
Hin6I	GCGC	1 cut(s)	819
HinP1I	GCGC	1 cut(s)	819
HincII	GTYRAC	1 cut(s)	429
HindII	GTYRAC	1 cut(s)	429
HindIII	AAGCTT	1 cut(s)	692
HinfI	GANTC	4 cut(s)	41, 224, 480, 516
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188I	TCNGA	5 cut(s)	18, 124, 465, 473, 711
Hpy188III	TCNNGA	8 cut(s)	7, 75, 497, 611, 656, 698, 842, 853
Hpy8I	GTNNAC	1 cut(s)	429
HpyAV	CCTTC	3 cut(s)	93, 376, 670
HpyCH4III	ACNGT	2 cut(s)	526, 643
HpyCH4IV	ACGT	2 cut(s)	310, 406
HpyCH4V	TGCA	6 cut(s)	215, 308, 706, 788, 868, 873
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
HpyF3I	CTNAG	4 cut(s)	352, 470, 635, 774
HpySE526I	ACGT	2 cut(s)	310, 406
Hsp92I	GRCGYC	1 cut(s)	669
Hsp92II	CATG	3 cut(s)	256, 418, 668
HspAI	GCGC	1 cut(s)	819
Kzo9I	GATC	3 cut(s)	401, 711, 793
LweI	GCATC	6 cut(s)	115, 127, 202, 254, 715, 730
MaeII	ACGT	2 cut(s)	310, 406
MaeIII	GTNAC	3 cut(s)	235, 526, 778
MalI	GATC	3 cut(s)	403, 713, 795
MboI	GATC	3 cut(s)	401, 711, 793
MboII	GAAGA	5 cut(s)	15, 525, 560, 659, 857
MfeI	CAATTG	1 cut(s)	555
MflI	RGATCY	1 cut(s)	711
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	4 cut(s)	421, 555, 651, 681
MlyI	GAGTC	2 cut(s)	233, 525
MnlI	CCTC	7 cut(s)	154, 214, 479, 493, 617, 654, 728
MroXI	GAANNNNTTC	1 cut(s)	651
MseI	TTAA	3 cut(s)	198, 207, 888
MspCI	CTTAAG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	372
MunI	CAATTG	1 cut(s)	555
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	1 cut(s)	190
NdeII	GATC	3 cut(s)	401, 711, 793
NlaIII	CATG	3 cut(s)	256, 418, 668
NlaIV	GGNNCC	2 cut(s)	6, 535
PdmI	GAANNNNTTC	1 cut(s)	651
PfeI	GAWTC	2 cut(s)	41, 480
Ple19I	CGATCG	1 cut(s)	796
PleI	GAGTC	2 cut(s)	232, 524
PmaCI	CACGTG	1 cut(s)	311
PmlI	CACGTG	1 cut(s)	311
PpsI	GAGTC	2 cut(s)	232, 524
Ppu21I	YACGTR	2 cut(s)	311, 407
PshBI	ATTAAT	1 cut(s)	888
Psp6I	CCWGG	1 cut(s)	370
PspCI	CACGTG	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	2 cut(s)	6, 535
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	711
PvuI	CGATCG	1 cut(s)	796
RsaI	GTAC	2 cut(s)	633, 640
RsaNI	GTAC	2 cut(s)	632, 639
SaqAI	TTAA	3 cut(s)	198, 207, 888
Sau3AI	GATC	3 cut(s)	401, 711, 793
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	233, 525
ScrFI	CCNGG	1 cut(s)	372
SduI	GDGCHC	1 cut(s)	67
SfaNI	GCATC	6 cut(s)	115, 127, 202, 254, 715, 730
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	2 cut(s)	206, 744
SmoI	CTYRAG	2 cut(s)	206, 744
Sse9I	AATT	4 cut(s)	421, 555, 651, 681
SsiI	CCGC	2 cut(s)	128, 271
SspI	AATATT	1 cut(s)	594
StyD4I	CCNGG	1 cut(s)	370
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	2 cut(s)	526, 643
TaiI	ACGT	2 cut(s)	313, 409
TaqI	TCGA	9 cut(s)	26, 90, 227, 456, 720, 738, 768, 792, 796
TasI	AATT	4 cut(s)	421, 555, 651, 681
TatI	WGTACW	1 cut(s)	638
TfiI	GAWTC	2 cut(s)	41, 480
Tru1I	TTAA	3 cut(s)	198, 207, 888
Tru9I	TTAA	3 cut(s)	198, 207, 888
TscAI	CASTG	3 cut(s)	111, 648, 821
TspDTI	ATGAA	6 cut(s)	33, 269, 306, 425, 504, 561
TspRI	CASTG	3 cut(s)	111, 648, 821
Vha464I	CTTAAG	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	4
VspI	ATTAAT	1 cut(s)	888
XapI	RAATTY	2 cut(s)	421, 651
XmnI	GAANNNNTTC	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.