Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0012169

Physical Location & Seq

Genomic Coordinates Reverse (-)

7271644 .. 7272827

Gene Structure 1184 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGCTCGACCGGTGGCTCGCCCTCCAGCTCCTCCCCACTGTCAAGATTGGTGTGCTGCAGCCCCTGGAGGAGATTTTCCTCCATTCTTTTGCATACCCTTCTTTTCTTGTCAGTGGAGACTACAACCAGCTTTACCAGTTTATAGAAGAACATGGTAAAGAAGTAGTAAAGAGAGGTGAAACCGATTTCGGACTGACCAAAGAAGAAACAATTCACAACCTTCTCTTTGTACTTGGTTTCAATGCGTTTGGTGGGTTTTCTGTCTTTCTGCCAAGTTTGATAGGCACAATAGCAAGCGACACCACCGGTTTACAGGCCAAAATAGTCAAAGAAGTCAGAGAAAACGCCGGTTCAACTTTGAGTTTCGACTCGGTGAAAAATTTGCAACTGGTTCAGTCCGTAGTGTGCGAAGCCCTCCGGTTCAACCCACCGGTTCCACTCCAATTTGCGCGGGCCAGAAAGGACTTCCAACTGAGTTCACACGACTCAATCTTTGACATCAAGAAGGGTGAGTTGCTCTGTGGGTTTCAACAACAGGTCATGAGGGATGAGAAAGTCTTCGATGAACCGGACACGTTTAAACCGGACCGGTTCATGAAAAACAAAGAGTTACTGAACTACTTGTACTGGTCCAACGGACCGCAGACCGGTTCACCAAGTGAGTCCAACAAGCAATGCGCTGCGAAGGACTATGTGACCCTCACTGCTGTTTTGCTTGTTGCGTATGCATTTCAAAGATATGATTCAATCACAGGAACCGGTACTTCAATCACAGCCCTTGAGAAGGCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0008150 GO:0008152 GO:0008202 GO:0009507 GO:0009526 GO:0009536 GO:0009611 GO:0009941 GO:0009987 GO:0016125 GO:0016491 GO:0019752 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

265

Amino Acids

29.67

Weight (kDa)

5.66

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	104 - 203	3e-16	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0012169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15440
fragaria_vesca	FvH4_6g42740
malus_domestica	MD09G1071400.v1.1 MD17G1100800.v1.1
prunus_persica	Prupe.3G213800_v2.0.a1
pyrus_communis	pycom09g03470 pycom17g09550
rosa_chinensis	RchiOBHm_Chr2g0158631
rosa_laevigata	RLG00000021101
rosa_multiflora	Rmu_co8067608.1_g000001 Rmu_sc0004188.1_g000015 Rmu_sc0034116.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091160
rosa_rugosa	Rorug02G0471000
rosa_samantha	Rh2AG536700 Rh2BG549900 Rh2CG520400 Rh2DG559500
rosa_wichuraiana	Rw2G044430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	451
AciI	CCGC	2 cut(s)	451, 641
AcsI	RAATTY	1 cut(s)	379
AdeI	CACNNNGTG	1 cut(s)	659
AfaI	GTAC	3 cut(s)	231, 626, 763
AfiI	CCNNNNNNNGG	2 cut(s)	647, 784
AflIII	ACRYGT	1 cut(s)	573
AgeI	ACCGGT	6 cut(s)	9, 305, 430, 588, 647, 758
AgsI	TTSAA	7 cut(s)	241, 354, 424, 530, 734, 747, 768
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	2 cut(s)	28, 130
AluI	AGCT	2 cut(s)	28, 130
Alw26I	GTCTC	1 cut(s)	111
AlwNI	CAGNNNCTG	1 cut(s)	64
AoxI	GGCC	3 cut(s)	315, 453, 786
ApeKI	GCWGC	3 cut(s)	55, 58, 680
ApoI	RAATTY	1 cut(s)	379
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
AsiGI	ACCGGT	6 cut(s)	9, 305, 430, 588, 647, 758
Asp700I	GAANNNNTTC	2 cut(s)	210, 557
AspLEI	GCGC	2 cut(s)	451, 680
AspS9I	GGNCC	4 cut(s)	453, 586, 630, 638
AsuHPI	GGTGA	4 cut(s)	188, 385, 521, 645
AvaII	GGWCC	3 cut(s)	586, 630, 638
BbsI	GAAGAC	1 cut(s)	550
BbvI	GCAGC	3 cut(s)	42, 70, 667
BciT130I	CCWGG	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	111
BfmI	CTRYAG	1 cut(s)	56
BisI	GCNGC	3 cut(s)	56, 59, 681
BlsI	GCNGC	3 cut(s)	57, 60, 682
Bme1390I	CCNGG	1 cut(s)	65
Bme18I	GGWCC	3 cut(s)	586, 630, 638
BmgT120I	GGNCC	4 cut(s)	453, 586, 630, 638
BmiI	GGNNCC	2 cut(s)	435, 757
BmrFI	CCNGG	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	550
BpmI	CTGGAG	2 cut(s)	8, 86
BsaJI	CCNNGG	1 cut(s)	63
BsaWI	WCCGGW	9 cut(s)	9, 305, 417, 430, 568, 583, 588, 647, 758
Bsc4I	CCNNNNNNNGG	2 cut(s)	647, 784
Bse118I	RCCGGY	7 cut(s)	9, 305, 347, 430, 588, 647, 758
Bse1I	ACTGG	3 cut(s)	136, 393, 632
Bse3DI	GCAATG	1 cut(s)	680
BseBI	CCWGG	1 cut(s)	65
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	553
BseLI	CCNNNNNNNGG	2 cut(s)	647, 784
BseMI	GCAATG	1 cut(s)	680
BseMII	CTCAG	1 cut(s)	464
BseNI	ACTGG	3 cut(s)	136, 393, 632
BseRI	GAGGAG	2 cut(s)	20, 83
BseXI	GCAGC	3 cut(s)	42, 70, 667
Bsh1236I	CGCG	1 cut(s)	451
Bsh1285I	CGRYCG	1 cut(s)	10
BshFI	GGCC	3 cut(s)	317, 455, 788
BshTI	ACCGGT	6 cut(s)	9, 305, 430, 588, 647, 758
BsiEI	CGRYCG	1 cut(s)	10
BslI	CCNNNNNNNGG	2 cut(s)	647, 784
BsmAI	GTCTC	1 cut(s)	111
BsnI	GGCC	3 cut(s)	317, 455, 788
BspACI	CCGC	2 cut(s)	451, 641
BspANI	GGCC	3 cut(s)	317, 455, 788
BspCNI	CTCAG	1 cut(s)	465
BspFNI	CGCG	1 cut(s)	451
BspHI	TCATGA	2 cut(s)	540, 594
BspLI	GGNNCC	2 cut(s)	435, 757
BspMAI	CTGCAG	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	680
BsrFI	RCCGGY	7 cut(s)	9, 305, 347, 430, 588, 647, 758
BsrI	ACTGG	3 cut(s)	136, 393, 632
BssAI	RCCGGY	7 cut(s)	9, 305, 347, 430, 588, 647, 758
BssECI	CCNNGG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	1 cut(s)	40
BstC8I	GCNNGC	3 cut(s)	18, 295, 453
BstDEI	CTNAG	1 cut(s)	473
BstENI	CCTNNNNNAGG	1 cut(s)	782
BstF5I	GGATG	1 cut(s)	553
BstFNI	CGCG	1 cut(s)	451
BstHHI	GCGC	2 cut(s)	451, 680
BstMAI	GTCTC	1 cut(s)	111
BstMCI	CGRYCG	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	63
BstSFI	CTRYAG	1 cut(s)	56
BstUI	CGCG	1 cut(s)	451
BstV1I	GCAGC	3 cut(s)	42, 70, 667
BstV2I	GAAGAC	1 cut(s)	550
BsuRI	GGCC	3 cut(s)	317, 455, 788
BtsCI	GGATG	1 cut(s)	553
BtsI	GCAGTG	1 cut(s)	702
BtsIMutI	CAGTG	3 cut(s)	36, 118, 702
Cac8I	GCNNGC	3 cut(s)	18, 295, 453
CaiI	CAGNNNCTG	1 cut(s)	64
CciI	TCATGA	2 cut(s)	540, 594
CfoI	GCGC	2 cut(s)	451, 680
Cfr10I	RCCGGY	7 cut(s)	9, 305, 347, 430, 588, 647, 758
Cfr13I	GGNCC	4 cut(s)	453, 586, 630, 638
CpoI	CGGWCCG	2 cut(s)	586, 638
Csp6I	GTAC	3 cut(s)	230, 625, 762
CspAI	ACCGGT	6 cut(s)	9, 305, 430, 588, 647, 758
CspI	CGGWCCG	2 cut(s)	586, 638
CviAII	CATG	3 cut(s)	152, 541, 595
CviJI	RGCY	9 cut(s)	16, 28, 61, 130, 317, 413, 455, 776, 788
CviKI_1	RGCY	9 cut(s)	16, 28, 61, 130, 317, 413, 455, 776, 788
CviQI	GTAC	3 cut(s)	230, 625, 762
DdeI	CTNAG	1 cut(s)	473
DraI	TTTAAA	1 cut(s)	580
DraIII	CACNNNGTG	1 cut(s)	659
Eco47I	GGWCC	3 cut(s)	586, 630, 638
EcoNI	CCTNNNNNAGG	1 cut(s)	782
EcoRII	CCWGG	1 cut(s)	63
EcoT22I	ATGCAT	1 cut(s)	730
FaeI	CATG	3 cut(s)	155, 544, 598
FaiI	YATR	8 cut(s)	94, 143, 153, 542, 596, 693, 726, 741
FatI	CATG	3 cut(s)	151, 540, 594
FauI	CCCGC	1 cut(s)	444
Fnu4HI	GCNGC	3 cut(s)	56, 59, 681
FokI	GGATG	1 cut(s)	560
Fsp4HI	GCNGC	3 cut(s)	56, 59, 681
GlaI	GCGC	2 cut(s)	450, 679
GluI	GCNGC	3 cut(s)	56, 59, 681
GsuI	CTGGAG	2 cut(s)	8, 86
HaeIII	GGCC	3 cut(s)	317, 455, 788
HhaI	GCGC	2 cut(s)	451, 680
Hin1II	CATG	3 cut(s)	155, 544, 598
Hin6I	GCGC	2 cut(s)	449, 678
HinP1I	GCGC	2 cut(s)	449, 678
HinfI	GANTC	4 cut(s)	368, 485, 662, 743
HphI	GGTGA	4 cut(s)	188, 385, 521, 645
Hpy166II	GTNNAC	3 cut(s)	311, 479, 653
Hpy188I	TCNGA	2 cut(s)	191, 338
Hpy188III	TCNNGA	4 cut(s)	43, 502, 541, 595
Hpy8I	GTNNAC	3 cut(s)	311, 479, 653
HpyAV	CCTTC	5 cut(s)	108, 230, 499, 679, 778
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	1 cut(s)	575
HpyCH4V	TGCA	4 cut(s)	58, 92, 385, 728
HpyF3I	CTNAG	1 cut(s)	473
HpySE526I	ACGT	1 cut(s)	575
Hsp92II	CATG	3 cut(s)	155, 544, 598
HspAI	GCGC	2 cut(s)	449, 678
LmnI	GCTCC	1 cut(s)	33
Lsp1109I	GCAGC	3 cut(s)	42, 70, 667
MaeII	ACGT	1 cut(s)	575
MaeIII	GTNAC	2 cut(s)	609, 694
MboII	GAAGA	3 cut(s)	158, 215, 550
MluCI	AATT	3 cut(s)	210, 379, 443
MlyI	GAGTC	3 cut(s)	362, 479, 671
MmeI	TCCRAC	3 cut(s)	493, 657, 690
MnlI	CCTC	8 cut(s)	32, 41, 61, 89, 167, 425, 537, 710
Mph1103I	ATGCAT	1 cut(s)	730
MroXI	GAANNNNTTC	2 cut(s)	210, 557
MseI	TTAA	1 cut(s)	579
MspR9I	CCNGG	1 cut(s)	65
MssI	GTTTAAAC	1 cut(s)	580
MvaI	CCWGG	1 cut(s)	65
MvnI	CGCG	1 cut(s)	451
NlaIII	CATG	3 cut(s)	155, 544, 598
NlaIV	GGNNCC	2 cut(s)	435, 757
NmuCI	GTSAC	1 cut(s)	694
NsiI	ATGCAT	1 cut(s)	730
PagI	TCATGA	2 cut(s)	540, 594
PdmI	GAANNNNTTC	2 cut(s)	210, 557
PfeI	GAWTC	1 cut(s)	743
PinAI	ACCGGT	6 cut(s)	9, 305, 430, 588, 647, 758
PkrI	GCNGC	3 cut(s)	57, 60, 682
PleI	GAGTC	3 cut(s)	362, 479, 670
PmeI	GTTTAAAC	1 cut(s)	580
PpsI	GAGTC	3 cut(s)	362, 479, 670
Psp6I	CCWGG	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	2 cut(s)	435, 757
PspPI	GGNCC	4 cut(s)	453, 586, 630, 638
PsrI	GAACNNNNNNTAC	2 cut(s)	608, 640
PstI	CTGCAG	1 cut(s)	60
PstNI	CAGNNNCTG	1 cut(s)	64
RsaI	GTAC	3 cut(s)	231, 626, 763
RsaNI	GTAC	3 cut(s)	230, 625, 762
Rsr2I	CGGWCCG	2 cut(s)	586, 638
RsrII	CGGWCCG	2 cut(s)	586, 638
SaqAI	TTAA	1 cut(s)	579
SatI	GCNGC	3 cut(s)	56, 59, 681
Sau96I	GGNCC	4 cut(s)	453, 586, 630, 638
SchI	GAGTC	3 cut(s)	362, 479, 671
ScrFI	CCNGG	1 cut(s)	65
SetI	ASST	6 cut(s)	30, 132, 178, 222, 540, 578
SfcI	CTRYAG	1 cut(s)	56
SinI	GGWCC	3 cut(s)	586, 630, 638
SmlI	CTYRAG	1 cut(s)	779
SmoI	CTYRAG	1 cut(s)	779
Sse9I	AATT	3 cut(s)	210, 379, 443
SsiI	CCGC	2 cut(s)	451, 641
StyD4I	CCNGG	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	1 cut(s)	578
TaqI	TCGA	3 cut(s)	6, 366, 561
TasI	AATT	3 cut(s)	210, 379, 443
TatI	WGTACW	2 cut(s)	229, 624
TfiI	GAWTC	1 cut(s)	743
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TscAI	CASTG	3 cut(s)	43, 118, 709
TseFI	GTSAC	1 cut(s)	694
TseI	GCWGC	3 cut(s)	55, 58, 680
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	3 cut(s)	579, 583, 611
TspGWI	ACGGA	2 cut(s)	388, 651
TspRI	CASTG	3 cut(s)	43, 118, 709
VpaK11BI	GGWCC	3 cut(s)	586, 630, 638
XagI	CCTNNNNNAGG	1 cut(s)	782
XapI	RAATTY	1 cut(s)	379
XmnI	GAANNNNTTC	2 cut(s)	210, 557
Zsp2I	ATGCAT	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.