pycom17g10140

Protein of unknown function (DUF1664)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0010965
Physical Location & Seq
Forward (+)
7808132 .. 7810922
2791 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 963 bp
ATGGCGTTGCAGACGGGGGTTTCCGGCTCCAAGGTTCTCATCCTCGTCGGAGCAGGCTTGACCAGTTCGATAGTTTTGAGGAGCGGGCGATTGTCTGAACTTATTGCACAGCTTCAGGATATACTGAAGGGTGTAAATGAAGCTGATATCTTGCCTGAGAAGTTTGATAGTGCAATTATCAGAGCTCAGATTCAACAATTGGCTCGAGAAATCAGGGAGTTAACCTCATCTGGCCCTGTAACTGTCTACAATGAGAATTCTTCCTCTAGTGCAGGGAGTTATGCTTCATATTTAGTTCCAGCTGCTGCAATTGGTGCAATGGGCTATTGTTACATGTGGTGGAAGGGCTGGTCATTTTCTGATGTAATGTTTGTAACAAGGCATAATATGGCAAATGCTGTTGCAACCGTGTCCAAACAATTAGAGAATGTGCATGAAACATTGGCCAGTACAAAAAGGCATCTGTCGAAGAAGCTGGAAAACTTGGATTGGAAGGTGGAGGAGCAGAAGGAAATAACTCAGCTTATCGCAAATGATGTGAATGAGGTGAAAACAAACCTTTCTCAAATTGGGTTTGATGTAGAAATGATTCATCAGATGGTGTCTGGGTTGGAAGAGAAGGTCGACTTTATTGAGAGCAAACAGGATGCAACCAACTCAGGTCTGTTGTATCTATGCCAAGTAGCAGACGGCGTCAAAGGTCAGCTGGATACTAAACCCTTACAGAATGTCTCAGCTAAGCTAGGAAAGCATTCACCAATGGCAATAGAGGATAAATCACCCAAGGGCCTTCAATTCTTTGCTGACAACGAAGAACGGAGCACAACGGAGAAATCAATGACAAAAAAGAATGATCCCAACATCTTCCCTGGAGAAAAAGTTCCAGCAATAAAAACAAGAATACACCGGTCGTATCCAGTTGGGATTTCTTTGACCCAGGACAAAATGGGCTCGGGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1664

Protein Analysis

321

Amino Acids

35.14

Weight (kDa)

6.34

Isoelectric Point (pI)

45.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1664 PF07889 92 - 215 1.8e-50 Protein of unknown function (DUF1664)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010965)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04960 AT1G04960
fragaria_vesca FvH4_6g41750 FvH4_6g41750
malus_domestica MD09G1117500.v1.1 MD17G1108700.v1.1
prunus_persica Prupe.3G206300_v2.0.a1 Prupe.3G206300_v2.0.a1
pyrus_communis pycom17g10140
rosa_chinensis RchiOBHm_Chr2g0157541
rosa_laevigata RLG00000020996
rosa_multiflora Rmu_sc0000195.1_g000040
rosa_roxburghii Rroxscaffold_2G00092140
rosa_rugosa Rorug02G0461900
rosa_samantha Rh2AG526000 Rh2BG540700 Rh2CG510700 Rh2DG549200 Rh4BG150000
rosa_wichuraiana Rw2G043570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 84
AccI GTMKAC 2 cut(s) 246, 624
AciI CCGC 1 cut(s) 84
AclWI GGATC 1 cut(s) 848
AcoI YGGCCR 1 cut(s) 444
AcsI RAATTY 1 cut(s) 256
AcuI CTGAAG 2 cut(s) 98, 146
AcyI GRCGYC 1 cut(s) 693
AfaI GTAC 1 cut(s) 451
AflIII ACRYGT 1 cut(s) 333
AgeI ACCGGT 1 cut(s) 906
AgsI TTSAA 2 cut(s) 194, 794
AjnI CCWGG 2 cut(s) 868, 936
AloI GAACNNNNNNTCC 2 cut(s) 864, 896
AluBI AGCT 9 cut(s) 112, 143, 185, 302, 475, 523, 706, 737, 742
AluI AGCT 9 cut(s) 112, 143, 185, 302, 475, 523, 706, 737, 742
Alw21I GWGCWC 2 cut(s) 187, 824
Alw26I GTCTC 1 cut(s) 736
AlwI GGATC 1 cut(s) 848
AlwNI CAGNNNCTG 1 cut(s) 305
Ama87I CYCGRG 2 cut(s) 204, 952
AoxI GGCC 3 cut(s) 232, 444, 787
ApeKI GCWGC 2 cut(s) 302, 305
ApoI RAATTY 1 cut(s) 256
AsiGI ACCGGT 1 cut(s) 906
Asp700I GAANNNNTTC 3 cut(s) 588, 751, 879
AspS9I GGNCC 2 cut(s) 233, 787
AsuHPI GGTGA 3 cut(s) 559, 747, 771
AvaI CYCGRG 2 cut(s) 204, 952
BalI TGGCCA 1 cut(s) 446
BanII GRGCYC 2 cut(s) 187, 953
Bbv12I GWGCWC 2 cut(s) 187, 824
BbvI GCAGC 2 cut(s) 289, 292
BccI CCATC 1 cut(s) 592
BceAI ACGGC 1 cut(s) 706
BciT130I CCWGG 2 cut(s) 870, 938
BciVI GTATCC 2 cut(s) 703, 924
BcoDI GTCTC 1 cut(s) 736
BfaI CTAG 2 cut(s) 267, 743
BfuI GTATCC 2 cut(s) 703, 924
BisI GCNGC 2 cut(s) 303, 306
BlpI GCTNAGC 1 cut(s) 738
BlsI GCNGC 2 cut(s) 304, 307
Bme1390I CCNGG 2 cut(s) 870, 938
BmeT110I CYCGRG 2 cut(s) 204, 952
BmgT120I GGNCC 2 cut(s) 233, 787
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 2 cut(s) 870, 938
BmsI GCATC 2 cut(s) 469, 637
BplI GAGNNNNNCTC 2 cut(s) 209, 241
BpmI CTGGAG 1 cut(s) 891
Bpu1102I GCTNAGC 1 cut(s) 738
BsaHI GRCGYC 1 cut(s) 693
BsaJI CCNNGG 4 cut(s) 30, 783, 868, 936
BsaWI WCCGGW 1 cut(s) 906
BsaXI ACNNNNNCTCC 2 cut(s) 864, 894
Bse118I RCCGGY 1 cut(s) 906
Bse1I ACTGG 3 cut(s) 63, 447, 917
Bse3DI GCAATG 1 cut(s) 324
BseBI CCWGG 2 cut(s) 870, 938
BseDI CCNNGG 4 cut(s) 30, 783, 868, 936
BseGI GGATG 2 cut(s) 39, 652
BseMI GCAATG 1 cut(s) 324
BseMII CTCAG 5 cut(s) 147, 200, 533, 672, 747
BseNI ACTGG 3 cut(s) 63, 447, 917
BseRI GAGGAG 2 cut(s) 94, 515
BseXI GCAGC 2 cut(s) 289, 292
BsgI GTGCAG 1 cut(s) 291
Bsh1285I CGRYCG 1 cut(s) 911
BshFI GGCC 3 cut(s) 234, 446, 789
BshTI ACCGGT 1 cut(s) 906
BsiEI CGRYCG 1 cut(s) 911
BsiHKAI GWGCWC 2 cut(s) 187, 824
BsiHKCI CYCGRG 2 cut(s) 204, 952
BsiSI CCGG 2 cut(s) 24, 907
BsmAI GTCTC 1 cut(s) 736
BsmI GAATGC 1 cut(s) 751
BsnI GGCC 3 cut(s) 234, 446, 789
BsoBI CYCGRG 2 cut(s) 204, 952
Bsp1286I GDGCHC 3 cut(s) 187, 824, 953
Bsp143I GATC 1 cut(s) 853
Bsp1720I GCTNAGC 1 cut(s) 738
BspACI CCGC 1 cut(s) 84
BspANI GGCC 3 cut(s) 234, 446, 789
BspCNI CTCAG 5 cut(s) 148, 199, 532, 671, 746
BspLI GGNNCC 1 cut(s) 28
BspPI GGATC 1 cut(s) 848
BsrBI CCGCTC 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 324
BsrFI RCCGGY 1 cut(s) 906
BsrI ACTGG 3 cut(s) 63, 447, 917
BssAI RCCGGY 1 cut(s) 906
BssECI CCNNGG 4 cut(s) 30, 783, 868, 936
BssMI GATC 1 cut(s) 853
BssNI GRCGYC 1 cut(s) 693
BssT1I CCWWGG 2 cut(s) 30, 783
Bst2UI CCWGG 2 cut(s) 870, 938
Bst4CI ACNGT 2 cut(s) 244, 409
Bst6I CTCTTC 1 cut(s) 609
BstACI GRCGYC 1 cut(s) 693
BstAPI GCANNNNNTGC 1 cut(s) 314
BstC8I GCNNGC 2 cut(s) 55, 86
BstDEI CTNAG 6 cut(s) 156, 186, 519, 658, 733, 738
BstF5I GGATG 2 cut(s) 39, 652
BstKTI GATC 1 cut(s) 856
BstMAI GTCTC 1 cut(s) 736
BstMBI GATC 1 cut(s) 853
BstMCI CGRYCG 1 cut(s) 911
BstMWI GCNNNNNNNGC 2 cut(s) 314, 748
BstNI CCWGG 2 cut(s) 870, 938
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 2 cut(s) 868, 936
BstV1I GCAGC 2 cut(s) 289, 292
BsuI GTATCC 2 cut(s) 703, 924
BsuRI GGCC 3 cut(s) 234, 446, 789
BtsCI GGATG 2 cut(s) 39, 652
Cac8I GCNNGC 2 cut(s) 55, 86
CaiI CAGNNNCTG 1 cut(s) 305
Cfr10I RCCGGY 1 cut(s) 906
Cfr13I GGNCC 2 cut(s) 233, 787
CseI GACGC 1 cut(s) 682
Csp6I GTAC 1 cut(s) 450
CspAI ACCGGT 1 cut(s) 906
CviAII CATG 2 cut(s) 334, 434
CviQI GTAC 1 cut(s) 450
DdeI CTNAG 6 cut(s) 156, 186, 519, 658, 733, 738
DpnI GATC 1 cut(s) 855
DpnII GATC 1 cut(s) 853
EaeI YGGCCR 1 cut(s) 444
Eam1104I CTCTTC 1 cut(s) 609
EarI CTCTTC 1 cut(s) 609
Ecl136II GAGCTC 1 cut(s) 185
Eco130I CCWWGG 2 cut(s) 30, 783
Eco24I GRGCYC 2 cut(s) 187, 953
Eco32I GATATC 1 cut(s) 148
Eco53kI GAGCTC 1 cut(s) 185
Eco57I CTGAAG 2 cut(s) 98, 146
Eco88I CYCGRG 2 cut(s) 204, 952
EcoICRI GAGCTC 1 cut(s) 185
EcoO109I RGGNCCY 1 cut(s) 787
EcoRI GAATTC 1 cut(s) 256
EcoRII CCWGG 2 cut(s) 868, 936
EcoRV GATATC 1 cut(s) 148
EcoT14I CCWWGG 2 cut(s) 30, 783
EcoT38I GRGCYC 2 cut(s) 187, 953
ErhI CCWWGG 2 cut(s) 30, 783
FaeI CATG 2 cut(s) 337, 437
FaiI YATR 9 cut(s) 122, 282, 289, 335, 384, 389, 435, 676, 959
FalI AAGNNNNNCTT 2 cut(s) 611, 643
FatI CATG 2 cut(s) 333, 433
FauI CCCGC 1 cut(s) 77
FblI GTMKAC 2 cut(s) 246, 624
Fnu4HI GCNGC 2 cut(s) 303, 306
FokI GGATG 2 cut(s) 26, 659
FriOI GRGCYC 2 cut(s) 187, 953
Fsp4HI GCNGC 2 cut(s) 303, 306
FspBI CTAG 2 cut(s) 267, 743
GluI GCNGC 2 cut(s) 303, 306
GsuI CTGGAG 1 cut(s) 891
HaeIII GGCC 3 cut(s) 234, 446, 789
HapII CCGG 2 cut(s) 24, 907
HgaI GACGC 1 cut(s) 682
Hin1I GRCGYC 1 cut(s) 693
Hin1II CATG 2 cut(s) 337, 437
HincII GTYRAC 2 cut(s) 222, 625
HindII GTYRAC 2 cut(s) 222, 625
HinfI GANTC 2 cut(s) 190, 589
HpaI GTTAAC 1 cut(s) 222
HpaII CCGG 2 cut(s) 24, 907
HphI GGTGA 3 cut(s) 559, 747, 771
Hpy166II GTNNAC 3 cut(s) 222, 247, 625
Hpy188I TCNGA 6 cut(s) 50, 97, 182, 189, 361, 597
Hpy188III TCNNGA 2 cut(s) 116, 206
Hpy8I GTNNAC 3 cut(s) 222, 247, 625
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 6 cut(s) 121, 337, 487, 502, 613, 800
HpyCH4III ACNGT 2 cut(s) 244, 409
HpyCH4V TGCA 9 cut(s) 10, 107, 173, 272, 308, 317, 404, 433, 650
HpyF10VI GCNNNNNNNGC 2 cut(s) 314, 748
HpyF3I CTNAG 6 cut(s) 156, 186, 519, 658, 733, 738
Hsp92I GRCGYC 1 cut(s) 693
Hsp92II CATG 2 cut(s) 337, 437
KspAI GTTAAC 1 cut(s) 222
Kzo9I GATC 1 cut(s) 853
LmnI GCTCC 5 cut(s) 32, 50, 81, 502, 819
Lsp1109I GCAGC 2 cut(s) 289, 292
LweI GCATC 2 cut(s) 469, 637
MaeI CTAG 2 cut(s) 267, 743
MaeIII GTNAC 3 cut(s) 238, 329, 373
MalI GATC 1 cut(s) 855
MbiI CCGCTC 1 cut(s) 84
MboI GATC 1 cut(s) 853
MboII GAAGA 5 cut(s) 252, 481, 626, 824, 856
MfeI CAATTG 2 cut(s) 197, 309
MhlI GDGCHC 3 cut(s) 187, 824, 953
MlsI TGGCCA 1 cut(s) 446
MluCI AATT 7 cut(s) 174, 197, 256, 309, 419, 567, 794
MluNI TGGCCA 1 cut(s) 446
MmeI TCCRAC 2 cut(s) 28, 591
MnlI CCTC 7 cut(s) 53, 72, 235, 274, 493, 538, 763
Mox20I TGGCCA 1 cut(s) 446
MroXI GAANNNNTTC 3 cut(s) 588, 751, 879
MscI TGGCCA 1 cut(s) 446
MseI TTAA 1 cut(s) 221
Msp20I TGGCCA 1 cut(s) 446
MspA1I CMGCKG 2 cut(s) 302, 706
MspI CCGG 2 cut(s) 24, 907
MspR9I CCNGG 2 cut(s) 870, 938
MunI CAATTG 2 cut(s) 197, 309
Mva1269I GAATGC 1 cut(s) 751
MvaI CCWGG 2 cut(s) 870, 938
MwoI GCNNNNNNNGC 2 cut(s) 314, 748
NdeII GATC 1 cut(s) 853
NlaIII CATG 2 cut(s) 337, 437
NlaIV GGNNCC 1 cut(s) 28
NspI RCATGY 1 cut(s) 337
PaeR7I CTCGAG 1 cut(s) 204
PciI ACATGT 1 cut(s) 333
PctI GAATGC 1 cut(s) 751
PdmI GAANNNNTTC 3 cut(s) 588, 751, 879
PfeI GAWTC 2 cut(s) 190, 589
PflFI GACNNNGTC 1 cut(s) 692
PinAI ACCGGT 1 cut(s) 906
PkrI GCNGC 2 cut(s) 304, 307
PscI ACATGT 1 cut(s) 333
Psp124BI GAGCTC 1 cut(s) 187
Psp6I CCWGG 2 cut(s) 868, 936
PspGI CCWGG 2 cut(s) 868, 936
PspN4I GGNNCC 1 cut(s) 28
PspPI GGNCC 2 cut(s) 233, 787
PstNI CAGNNNCTG 1 cut(s) 305
PsyI GACNNNGTC 1 cut(s) 692
PvuII CAGCTG 2 cut(s) 302, 706
RsaI GTAC 1 cut(s) 451
RsaNI GTAC 1 cut(s) 450
SacI GAGCTC 1 cut(s) 187
SalI GTCGAC 1 cut(s) 623
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 2 cut(s) 303, 306
Sau3AI GATC 1 cut(s) 853
Sau96I GGNCC 2 cut(s) 233, 787
ScrFI CCNGG 2 cut(s) 870, 938
SduI GDGCHC 3 cut(s) 187, 824, 953
SfaNI GCATC 2 cut(s) 469, 637
Sfr274I CTCGAG 1 cut(s) 204
SlaI CTCGAG 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
Sse9I AATT 7 cut(s) 174, 197, 256, 309, 419, 567, 794
SsiI CCGC 1 cut(s) 84
SspMI CTAG 2 cut(s) 267, 743
SstI GAGCTC 1 cut(s) 187
StyD4I CCNGG 2 cut(s) 868, 936
StyI CCWWGG 2 cut(s) 30, 783
TaaI ACNGT 2 cut(s) 244, 409
TaqI TCGA 4 cut(s) 68, 205, 467, 624
TasI AATT 7 cut(s) 174, 197, 256, 309, 419, 567, 794
TatI WGTACW 1 cut(s) 449
TfiI GAWTC 2 cut(s) 190, 589
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TseI GCWGC 2 cut(s) 302, 305
TspDTI ATGAA 4 cut(s) 153, 276, 450, 581
TspGWI ACGGA 2 cut(s) 832, 842
Tth111I GACNNNGTC 1 cut(s) 692
XapI RAATTY 1 cut(s) 256
XceI RCATGY 1 cut(s) 337
XhoI CTCGAG 1 cut(s) 204
XmiI GTMKAC 2 cut(s) 246, 624
XmnI GAANNNNTTC 3 cut(s) 588, 751, 879
XspI CTAG 2 cut(s) 267, 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.