pycom17g10490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0006873
Physical Location & Seq
Reverse (-)
8086749 .. 8087138
390 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 390 bp
ATGGGCAGCCAAAGTGATTCTGATCCAACCGTGGCTTCACTTTCCTCCATTGCTCTGTTGCAAGAGAGGTTCAGGCAGCTTGAGAAAGTAAAGGAGAGGAGGGAGGAGCAGCAGCTTCTGCAGAAGTTATCTGAGACTGATCATCAAAGGGTTGTTTGCACAACAAGGCATTTTGATCATCAGCCTGCAAAGTTCCCATTCGATTCCGATATAGTCGTTCCGGTTTGTCCAAGTGCTCCTGCAGATCATTCACTCTCTCTAGGGCTTAATCTGCAGCCATCTTCCACACACTCATGGCCTAACAACACAAAAGCAGCTGCTGCCGCAGCAAGTGCTTCTGCAAAAAGTTTTGACAACTCAGACCTTATTGACACCTCTCTTCATCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.14

Weight (kDa)

5.8

Isoelectric Point (pI)

62.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 324
AclWI GGATC 1 cut(s) 17
AjuI GAANNNNNNNTTGG 2 cut(s) 19, 51
AluBI AGCT 3 cut(s) 79, 115, 317
AluI AGCT 3 cut(s) 79, 115, 317
Alw21I GWGCWC 1 cut(s) 238
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 1 cut(s) 17
AlwNI CAGNNNCTG 2 cut(s) 118, 320
AoxI GGCC 1 cut(s) 296
ApeKI GCWGC 9 cut(s) 6, 76, 109, 112, 274, 314, 317, 320, 326
Bbv12I GWGCWC 1 cut(s) 238
BbvI GCAGC 9 cut(s) 18, 88, 121, 124, 286, 304, 307, 326, 338
BccI CCATC 1 cut(s) 286
BclI TGATCA 2 cut(s) 139, 175
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 1 cut(s) 260
BfmI CTRYAG 4 cut(s) 119, 240, 272, 386
BpuEI CTTGAG 1 cut(s) 101
BsaBI GATNNNNATC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 30
BsaWI WCCGGW 1 cut(s) 220
Bse3DI GCAATG 1 cut(s) 48
Bse8I GATNNNNATC 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 30
BseJI GATNNNNATC 1 cut(s) 21
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 2 cut(s) 123, 372
BseRI GAGGAG 2 cut(s) 112, 119
BseXI GCAGC 9 cut(s) 18, 88, 121, 124, 286, 304, 307, 326, 338
BshFI GGCC 1 cut(s) 298
BsiHKAI GWGCWC 1 cut(s) 238
BsiSI CCGG 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 128
BsnI GGCC 1 cut(s) 298
Bsp1286I GDGCHC 1 cut(s) 238
Bsp143I GATC 4 cut(s) 22, 139, 175, 244
BspACI CCGC 1 cut(s) 324
BspANI GGCC 1 cut(s) 298
BspCNI CTCAG 2 cut(s) 124, 371
BspMAI CTGCAG 3 cut(s) 123, 244, 276
BspPI GGATC 1 cut(s) 17
BsrDI GCAATG 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 4 cut(s) 22, 139, 175, 244
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 384
BstAPI GCANNNNNTGC 3 cut(s) 118, 320, 332
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 2 cut(s) 132, 358
BstDSI CCRYGG 1 cut(s) 30
BstKTI GATC 4 cut(s) 25, 142, 178, 247
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 4 cut(s) 22, 139, 175, 244
BstMWI GCNNNNNNNGC 6 cut(s) 118, 271, 320, 323, 326, 332
BstSFI CTRYAG 4 cut(s) 119, 240, 272, 386
BstV1I GCAGC 9 cut(s) 18, 88, 121, 124, 286, 304, 307, 326, 338
BsuRI GGCC 1 cut(s) 298
BtgI CCRYGG 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 186
CaiI CAGNNNCTG 2 cut(s) 118, 320
CviAII CATG 1 cut(s) 294
CviJI RGCY 9 cut(s) 9, 35, 79, 115, 184, 265, 277, 298, 317
CviKI_1 RGCY 9 cut(s) 9, 35, 79, 115, 184, 265, 277, 298, 317
DdeI CTNAG 2 cut(s) 132, 358
DpnI GATC 4 cut(s) 24, 141, 177, 246
DpnII GATC 4 cut(s) 22, 139, 175, 244
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
FaeI CATG 1 cut(s) 297
FaiI YATR 2 cut(s) 212, 295
FatI CATG 1 cut(s) 293
FbaI TGATCA 2 cut(s) 139, 175
FspBI CTAG 1 cut(s) 260
HaeIII GGCC 1 cut(s) 298
HapII CCGG 1 cut(s) 221
Hin1II CATG 1 cut(s) 297
HinfI GANTC 2 cut(s) 17, 203
HpaII CCGG 1 cut(s) 221
Hpy188I TCNGA 4 cut(s) 22, 133, 208, 361
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4V TGCA 7 cut(s) 61, 121, 159, 188, 242, 274, 341
HpyF10VI GCNNNNNNNGC 6 cut(s) 118, 271, 320, 323, 326, 332
HpyF3I CTNAG 2 cut(s) 132, 358
Hsp92II CATG 1 cut(s) 297
Ksp22I TGATCA 2 cut(s) 139, 175
Kzo9I GATC 4 cut(s) 22, 139, 175, 244
LmnI GCTCC 2 cut(s) 106, 241
LpnPI CCDG 4 cut(s) 58, 198, 234, 252
Lsp1109I GCAGC 9 cut(s) 18, 88, 121, 124, 286, 304, 307, 326, 338
MaeI CTAG 1 cut(s) 260
MalI GATC 4 cut(s) 24, 141, 177, 246
MboI GATC 4 cut(s) 22, 139, 175, 244
MboII GAAGA 2 cut(s) 273, 371
MhlI GDGCHC 1 cut(s) 238
MmeI TCCRAC 1 cut(s) 50
MnlI CCTC 6 cut(s) 55, 60, 90, 93, 97, 385
MseI TTAA 1 cut(s) 267
MslI CAYNNNNRTG 1 cut(s) 292
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 1 cut(s) 221
MwoI GCNNNNNNNGC 6 cut(s) 118, 271, 320, 323, 326, 332
NdeII GATC 4 cut(s) 22, 139, 175, 244
NlaIII CATG 1 cut(s) 297
PfeI GAWTC 2 cut(s) 17, 203
PstI CTGCAG 3 cut(s) 123, 244, 276
PstNI CAGNNNCTG 2 cut(s) 118, 320
PvuII CAGCTG 1 cut(s) 317
RseI CAYNNNNRTG 1 cut(s) 292
SaqAI TTAA 1 cut(s) 267
Sau3AI GATC 4 cut(s) 22, 139, 175, 244
SduI GDGCHC 1 cut(s) 238
SetI ASST 6 cut(s) 71, 81, 117, 319, 366, 377
SfcI CTRYAG 4 cut(s) 119, 240, 272, 386
SmiMI CAYNNNNRTG 1 cut(s) 292
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
SsiI CCGC 1 cut(s) 324
SspMI CTAG 1 cut(s) 260
TaaI ACNGT 1 cut(s) 31
TaqI TCGA 1 cut(s) 201
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 2 cut(s) 17, 203
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TseI GCWGC 9 cut(s) 6, 76, 109, 112, 274, 314, 317, 320, 326
TspDTI ATGAA 1 cut(s) 371
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.