Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0013411

Physical Location & Seq

Genomic Coordinates Reverse (-)

8509373 .. 8509840

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGGTCTCTCAAGTCTACCAGCTCCATCAGAAGGAGTTCTATGTGTGCTTTTAGTAAACACAGCCCTATCAGTCTCCATTATCAAGGGGATAATCCGATCAGTCCTGCAAGTAGTTGGTATCCGTCTCACATCAGCCTCCTCATCTTCTTTCCCATCAGAAGACTCTGCTGAAAACCTCTCAGAATCATTTGAGTTCCATGTCAATCCTTCGGCTAGTTACATTGAGGACATCAGGAGCCATATCCCAGCAATTCGGTTTGACGCTGTGTGTAGCTTCAAGCAGCAGAAACACGAATGCTCTGTCTGCCTAACCGAGTTTGAACCTGAATCAGAGATCAACCGCTTGTCTTGTGGCCATATTTTCCATCAACATTGCTTAGAGAAGTGGTTGAATTACTCGAACGTTACATGCCCTCTTTGTAGGACTCCGTTTATGCCTGGGGAGGACGCACCCTGCTTCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006066 GO:0006082 GO:0006464 GO:0006508 GO:0006511 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009739 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019752 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0032787 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043412 GO:0043436 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044424 GO:0044464 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0080167 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1901615 GO:1901698 GO:1901700 GO:1902644 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

156

Amino Acids

17.15

Weight (kDa)

5.26

Isoelectric Point (pI)

69.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	96 - 142	5.3e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	99 - 142	2.9e-14	Ring finger domain
zf-RING_11	PF17123	99 - 127	2.5e-09	RING-like zinc finger
zf-RING_5	PF14634	99 - 143	5.1e-09	zinc-RING finger domain
zf-C3HC4_2	PF13923	99 - 141	3.3e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	100 - 141	1.4e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	100 - 139	6.5e-07	RING-type zinc-finger
zf-ANAPC11	PF12861	117 - 145	8.3e-06	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

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Orthologous Genes (Group: OG0013411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04240 AT2G04240
fragaria_vesca	FvH4_6g40400
malus_domestica	MD09G1131400.v1.1 MD17G1105700.v1.1
prunus_persica	Prupe.3G194800_v2.0.a1
pyrus_communis	pycom09g05360 pycom17g10980
rosa_chinensis	RchiOBHm_Chr2g0155621
rosa_laevigata	RLG00000020849
rosa_multiflora	Rmu_sc0003971.1_g000006
rosa_roxburghii	Rroxscaffold_2G00093610
rosa_rugosa	Rorug02G0448500
rosa_samantha	Rh2AG514700 Rh2BG525500 Rh2CG499600 Rh2DG534500
rosa_wichuraiana	Rw2G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	16
AciI	CCGC	1 cut(s)	343
AclI	AACGTT	1 cut(s)	405
AcoI	YGGCCR	1 cut(s)	355
AfiI	CCNNNNNNNGG	2 cut(s)	32, 462
AgsI	TTSAA	3 cut(s)	280, 323, 394
AjnI	CCWGG	1 cut(s)	439
AluBI	AGCT	2 cut(s)	23, 276
AluI	AGCT	2 cut(s)	23, 276
Alw26I	GTCTC	3 cut(s)	11, 79, 131
AoxI	GGCC	1 cut(s)	355
ApeKI	GCWGC	1 cut(s)	283
ArsI	GACNNNNNNTTYG	2 cut(s)	288, 320
Asp700I	GAANNNNTTC	1 cut(s)	36
BalI	TGGCCA	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	3 cut(s)	34, 163, 375
BciT130I	CCWGG	1 cut(s)	441
BciVI	GTATCC	1 cut(s)	131
BcoDI	GTCTC	3 cut(s)	11, 79, 131
BfaI	CTAG	1 cut(s)	216
BfuI	GTATCC	1 cut(s)	131
BisI	GCNGC	1 cut(s)	284
BlsI	GCNGC	1 cut(s)	285
Bme1390I	CCNGG	1 cut(s)	441
BmiI	GGNNCC	1 cut(s)	239
BmrFI	CCNGG	1 cut(s)	441
BpiI	GAAGAC	1 cut(s)	168
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	440
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 462
Bse3DI	GCAATG	1 cut(s)	373
BseBI	CCWGG	1 cut(s)	441
BseDI	CCNNGG	1 cut(s)	440
BseLI	CCNNNNNNNGG	2 cut(s)	32, 462
BseMI	GCAATG	1 cut(s)	373
BseMII	CTCAG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	130
BseXI	GCAGC	1 cut(s)	295
BseYI	CCCAGC	1 cut(s)	247
BshFI	GGCC	1 cut(s)	357
BslI	CCNNNNNNNGG	2 cut(s)	32, 462
BsmAI	GTCTC	3 cut(s)	11, 79, 131
BsmBI	CGTCTC	1 cut(s)	131
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	357
Bso31I	GGTCTC	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	98, 336
BspACI	CCGC	1 cut(s)	343
BspANI	GGCC	1 cut(s)	357
BspCNI	CTCAG	1 cut(s)	194
BspLI	GGNNCC	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	373
BssECI	CCNNGG	1 cut(s)	440
BssMI	GATC	2 cut(s)	98, 336
Bst2UI	CCWGG	1 cut(s)	441
BstDEI	CTNAG	2 cut(s)	181, 379
BstKTI	GATC	2 cut(s)	101, 339
BstMAI	GTCTC	3 cut(s)	11, 79, 131
BstMBI	GATC	2 cut(s)	98, 336
BstMWI	GCNNNNNNNGC	1 cut(s)	306
BstNI	CCWGG	1 cut(s)	441
BstNSI	RCATGY	1 cut(s)	414
BstSCI	CCNGG	1 cut(s)	439
BstV1I	GCAGC	1 cut(s)	295
BstV2I	GAAGAC	1 cut(s)	168
BsuI	GTATCC	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	357
CseI	GACGC	2 cut(s)	272, 458
CviAII	CATG	2 cut(s)	200, 411
CviJI	RGCY	7 cut(s)	23, 65, 137, 215, 240, 276, 357
CviKI_1	RGCY	7 cut(s)	23, 65, 137, 215, 240, 276, 357
DdeI	CTNAG	2 cut(s)	181, 379
DpnI	GATC	2 cut(s)	100, 338
DpnII	GATC	2 cut(s)	98, 336
EaeI	YGGCCR	1 cut(s)	355
Eco31I	GGTCTC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	439
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	2 cut(s)	203, 414
FaiI	YATR	6 cut(s)	43, 201, 243, 360, 412, 437
FatI	CATG	2 cut(s)	199, 410
FblI	GTMKAC	1 cut(s)	16
Fnu4HI	GCNGC	1 cut(s)	284
Fsp4HI	GCNGC	1 cut(s)	284
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	1 cut(s)	284
GsaI	CCCAGC	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	357
HgaI	GACGC	2 cut(s)	272, 458
Hin1II	CATG	2 cut(s)	203, 414
HinfI	GANTC	4 cut(s)	164, 185, 329, 427
Hpy166II	GTNNAC	2 cut(s)	17, 58
Hpy188I	TCNGA	5 cut(s)	31, 98, 160, 184, 334
Hpy188III	TCNNGA	1 cut(s)	235
Hpy8I	GTNNAC	2 cut(s)	17, 58
HpyAV	CCTTC	2 cut(s)	26, 219
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	1 cut(s)	109
HpyF10VI	GCNNNNNNNGC	1 cut(s)	306
HpyF3I	CTNAG	2 cut(s)	181, 379
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	2 cut(s)	203, 414
Kzo9I	GATC	2 cut(s)	98, 336
LmnI	GCTCC	2 cut(s)	28, 237
LpnPI	CCDG	8 cut(s)	33, 119, 220, 261, 339, 426, 448, 453
Lsp1109I	GCAGC	1 cut(s)	295
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	2 cut(s)	218, 406
MalI	GATC	2 cut(s)	100, 338
MboI	GATC	2 cut(s)	98, 336
MboII	GAAGA	2 cut(s)	138, 173
MlsI	TGGCCA	1 cut(s)	357
MluCI	AATT	2 cut(s)	252, 394
MluNI	TGGCCA	1 cut(s)	357
MlyI	GAGTC	2 cut(s)	158, 421
MnlI	CCTC	6 cut(s)	148, 151, 188, 220, 426, 439
Mox20I	TGGCCA	1 cut(s)	357
MroXI	GAANNNNTTC	1 cut(s)	36
MscI	TGGCCA	1 cut(s)	357
Msp20I	TGGCCA	1 cut(s)	357
MspR9I	CCNGG	1 cut(s)	441
Mva1269I	GAATGC	1 cut(s)	302
MvaI	CCWGG	1 cut(s)	441
MwoI	GCNNNNNNNGC	1 cut(s)	306
NdeII	GATC	2 cut(s)	98, 336
NlaIII	CATG	2 cut(s)	203, 414
NlaIV	GGNNCC	1 cut(s)	239
NspI	RCATGY	1 cut(s)	414
PctI	GAATGC	1 cut(s)	302
PdmI	GAANNNNTTC	1 cut(s)	36
PfeI	GAWTC	2 cut(s)	185, 329
PkrI	GCNGC	1 cut(s)	285
PleI	GAGTC	2 cut(s)	158, 421
PpsI	GAGTC	2 cut(s)	158, 421
Psp1406I	AACGTT	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	439
PspFI	CCCAGC	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	1 cut(s)	239
SatI	GCNGC	1 cut(s)	284
Sau3AI	GATC	2 cut(s)	98, 336
SchI	GAGTC	2 cut(s)	158, 421
ScrFI	CCNGG	1 cut(s)	441
SetI	ASST	5 cut(s)	25, 180, 278, 328, 408
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	2 cut(s)	252, 394
SsiI	CCGC	1 cut(s)	343
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	439
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	1 cut(s)	401
TasI	AATT	2 cut(s)	252, 394
TfiI	GAWTC	2 cut(s)	185, 329
TseI	GCWGC	1 cut(s)	283
TspGWI	ACGGA	2 cut(s)	113, 420
XceI	RCATGY	1 cut(s)	414
XmiI	GTMKAC	1 cut(s)	16
XmnI	GAANNNNTTC	1 cut(s)	36
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.