pycom17g11260

This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP- glucose from Glc-1-P and ATP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0011236
Physical Location & Seq
Forward (+)
8803659 .. 8805355
1697 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 897 bp
ATGCGAGCCGGTGTGTTGGGGATTATCCTGGGTGGGGGAGCTGGGACGAGGCTTTACCCATTGACCAAGAAGCGTGCGAAGCCTGCTGTTCCATTGGGAGCAAACTACAGGCTGATCGATATCCCAGTCAGTAATTGCCTCAACAGCAACGTGTCCAAGATCTATGTGCTGACCCAGTTCAATTCCGCTTCGCTCAATCGCCATCTTTCTCGTGCTTATGCTACTAATATGGGTGGCTACAAAAATGAAGGCTTTGTTGAGGTTCTTGCTGCCCAGCAGAGCCCTGAGAATCCCAATTGGTTTCAGGGTACTGTGGATGCCGTGAGACAGTACTTGTGGTTGTTTGAGGAGCACAATGTGTTGGAATTTTTGGTTCTTGCTGGGGATCATTTGTATAGGATGGACTATGAGAGGTTTATTCAGGCGCATAGAGAAACTGATGCAGACATCACTGTGGCTGCTCTGCCCATGGATGAGAAGCGCACTACCACCTTTGGTTTGATGAAGATTGATGAAGAGGGAAGGATTATTGAGTTTGCTGAGAAACCAAAAGGGGAGCAACTCAAAGCTATGAAGGTTGATACAGCCATCCTGGGTCTTGATGATGAGAGAGCTAAAGAGATGCCTTATATTGCCAGCATGGGTATATATGTTGTGAGCAAAAATGTCATGTTAGATCTACTTCGAGACAAGTTTCCTGGTGCAAATGATTTCGGGAGTGAAGTTATTCCAGGCGCAACTTCCATTGGTTTGAGAACTGATGCTAACAGGAGGTTCCTTTCTGCGAAGGGCAGCGTTCCAATTGGTATTGGCAAGAATTCCCACATTAGGAGAGCTATAATTGATAAGAATGCGCGAATTGGAGAGAATGTTAAGGTAAGCATGGTATCATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko00520 ko01100 ko01110 ko02026 map00500 map00520 map01100 map01110 map02026
Pfam Domains
Protein Families
NTP_transferase

Protein Analysis

299

Amino Acids

32.99

Weight (kDa)

8.99

Isoelectric Point (pI)

29.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTP_transferase PF00483 7 - 248 7.3e-56 Nucleotidyl transferase
LbH_GLGC PF25247 254 - 295 1.5e-10 GLGC left-handed parallel beta-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011236)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48300
fragaria_vesca FvH4_6g40220
malus_domestica MD09G1133900.v1.1 MD17G1122400.v1.1 MD17G1122900.v1.1
prunus_persica Prupe.3G192600_v2.0.a1
pyrus_communis pycom09g05520 pycom17g11260 pycom17g11350 pycom17g11450
rosa_chinensis RchiOBHm_Chr2g0155241
rosa_laevigata RLG00000020829
rosa_multiflora Rmu_sc0012066.1_g000006
rosa_roxburghii Rroxscaffold_2G00093840
rosa_rugosa Rorug02G0446300
rosa_samantha Rh2AG512700 Rh2BG523300 Rh2CG497700 Rh2DG533000
rosa_wichuraiana Rw2G042120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 856
AciI CCGC 1 cut(s) 186
AclWI GGATC 1 cut(s) 393
AcsI RAATTY 2 cut(s) 365, 817
AdeI CACNNNGTG 1 cut(s) 358
AfaI GTAC 2 cut(s) 310, 332
AfiI CCNNNNNNNGG 2 cut(s) 34, 828
AflIII ACRYGT 1 cut(s) 150
AgsI TTSAA 1 cut(s) 181
AjnI CCWGG 4 cut(s) 27, 591, 697, 730
AluBI AGCT 4 cut(s) 41, 569, 614, 836
AluI AGCT 4 cut(s) 41, 569, 614, 836
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 2 cut(s) 319, 681
AlwI GGATC 1 cut(s) 393
ApeKI GCWGC 3 cut(s) 269, 458, 792
ApoI RAATTY 2 cut(s) 365, 817
Asp700I GAANNNNTTC 1 cut(s) 726
AspLEI GCGC 4 cut(s) 427, 483, 737, 856
BanII GRGCYC 1 cut(s) 284
BauI CACGAG 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 3 cut(s) 256, 445, 804
BccI CCATC 3 cut(s) 210, 394, 596
BceAI ACGGC 1 cut(s) 305
BciT130I CCWGG 4 cut(s) 29, 593, 699, 732
BcoDI GTCTC 2 cut(s) 319, 681
BfmI CTRYAG 1 cut(s) 106
BglII AGATCT 2 cut(s) 159, 676
BisI GCNGC 3 cut(s) 270, 459, 793
BlsI GCNGC 3 cut(s) 271, 460, 794
BmcAI AGTACT 1 cut(s) 332
Bme1390I CCNGG 4 cut(s) 29, 593, 699, 732
BmiI GGNNCC 1 cut(s) 776
BmrFI CCNGG 4 cut(s) 29, 593, 699, 732
BmrI ACTGGG 2 cut(s) 119, 169
BmsI GCATC 4 cut(s) 307, 430, 612, 751
BmuI ACTGGG 2 cut(s) 119, 169
Bsa29I ATCGAT 1 cut(s) 117
BsaBI GATNNNNATC 1 cut(s) 119
BsaJI CCNNGG 3 cut(s) 28, 468, 592
BsaXI ACNNNNNCTCC 2 cut(s) 855, 885
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 828
Bse118I RCCGGY 1 cut(s) 8
Bse1I ACTGG 2 cut(s) 125, 175
Bse8I GATNNNNATC 1 cut(s) 119
BseBI CCWGG 4 cut(s) 29, 593, 699, 732
BseCI ATCGAT 1 cut(s) 117
BseDI CCNNGG 3 cut(s) 28, 468, 592
BseGI GGATG 4 cut(s) 322, 405, 478, 588
BseJI GATNNNNATC 1 cut(s) 119
BseLI CCNNNNNNNGG 2 cut(s) 34, 828
BseMII CTCAG 2 cut(s) 276, 531
BseNI ACTGG 2 cut(s) 125, 175
BseRI GAGGAG 1 cut(s) 362
BseXI GCAGC 3 cut(s) 256, 445, 804
BseYI CCCAGC 3 cut(s) 41, 273, 380
Bsh1236I CGCG 1 cut(s) 856
BshVI ATCGAT 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 354
BsiSI CCGG 1 cut(s) 9
BslFI GGGAC 1 cut(s) 58
BslI CCNNNNNNNGG 2 cut(s) 34, 828
BsmAI GTCTC 2 cut(s) 319, 681
BsmFI GGGAC 1 cut(s) 58
BsmI GAATGC 1 cut(s) 856
Bsp1286I GDGCHC 2 cut(s) 284, 354
Bsp143I GATC 4 cut(s) 114, 159, 385, 676
Bsp19I CCATGG 1 cut(s) 468
BspACI CCGC 1 cut(s) 186
BspCNI CTCAG 2 cut(s) 277, 532
BspDI ATCGAT 1 cut(s) 117
BspFNI CGCG 1 cut(s) 856
BspLI GGNNCC 1 cut(s) 776
BspPI GGATC 1 cut(s) 393
BsrFI RCCGGY 1 cut(s) 8
BsrI ACTGG 2 cut(s) 125, 175
BssAI RCCGGY 1 cut(s) 8
BssECI CCNNGG 3 cut(s) 28, 468, 592
BssMI GATC 4 cut(s) 114, 159, 385, 676
BssSI CACGAG 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 468
Bst2BI CACGAG 1 cut(s) 210
Bst2UI CCWGG 4 cut(s) 29, 593, 699, 732
Bst4CI ACNGT 3 cut(s) 313, 330, 454
Bst6I CTCTTC 1 cut(s) 510
BstC8I GCNNGC 4 cut(s) 6, 75, 84, 637
BstDEI CTNAG 2 cut(s) 285, 540
BstDSI CCRYGG 1 cut(s) 468
BstF5I GGATG 4 cut(s) 322, 405, 478, 588
BstFNI CGCG 1 cut(s) 856
BstHHI GCGC 4 cut(s) 427, 483, 737, 856
BstKTI GATC 4 cut(s) 117, 162, 388, 679
BstMAI GTCTC 2 cut(s) 319, 681
BstMBI GATC 4 cut(s) 114, 159, 385, 676
BstMWI GCNNNNNNNGC 3 cut(s) 79, 83, 144
BstNI CCWGG 4 cut(s) 29, 593, 699, 732
BstSCI CCNGG 4 cut(s) 27, 591, 697, 730
BstSFI CTRYAG 1 cut(s) 106
BstUI CGCG 1 cut(s) 856
BstV1I GCAGC 3 cut(s) 256, 445, 804
BstX2I RGATCY 2 cut(s) 159, 676
BstYI RGATCY 2 cut(s) 159, 676
Bsu15I ATCGAT 1 cut(s) 117
BsuTUI ATCGAT 1 cut(s) 117
BtgI CCRYGG 1 cut(s) 468
BtsCI GGATG 4 cut(s) 322, 405, 478, 588
BtsIMutI CAGTG 1 cut(s) 450
Cac8I GCNNGC 4 cut(s) 6, 75, 84, 637
CfoI GCGC 4 cut(s) 427, 483, 737, 856
Cfr10I RCCGGY 1 cut(s) 8
ClaI ATCGAT 1 cut(s) 117
Csp6I GTAC 2 cut(s) 309, 331
CviAII CATG 4 cut(s) 469, 640, 670, 883
CviQI GTAC 2 cut(s) 309, 331
DdeI CTNAG 2 cut(s) 285, 540
DpnI GATC 4 cut(s) 116, 161, 387, 678
DpnII GATC 4 cut(s) 114, 159, 385, 676
DraIII CACNNNGTG 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 510
EarI CTCTTC 1 cut(s) 510
Eco130I CCWWGG 1 cut(s) 468
Eco24I GRGCYC 1 cut(s) 284
Eco32I GATATC 1 cut(s) 121
EcoRI GAATTC 1 cut(s) 817
EcoRII CCWGG 4 cut(s) 27, 591, 697, 730
EcoRV GATATC 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 468
EcoT38I GRGCYC 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 468
FaeI CATG 4 cut(s) 472, 643, 673, 886
FaqI GGGAC 1 cut(s) 58
FatI CATG 4 cut(s) 468, 639, 669, 882
Fnu4HI GCNGC 3 cut(s) 270, 459, 793
FokI GGATG 4 cut(s) 329, 412, 485, 575
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 3 cut(s) 270, 459, 793
GlaI GCGC 4 cut(s) 426, 482, 736, 855
GluI GCNGC 3 cut(s) 270, 459, 793
GsaI CCCAGC 3 cut(s) 45, 277, 384
HapII CCGG 1 cut(s) 9
HhaI GCGC 4 cut(s) 427, 483, 737, 856
Hin1II CATG 4 cut(s) 472, 643, 673, 886
Hin6I GCGC 4 cut(s) 425, 481, 735, 854
HinP1I GCGC 4 cut(s) 425, 481, 735, 854
HinfI GANTC 1 cut(s) 289
HpaII CCGG 1 cut(s) 9
Hpy188III TCNNGA 3 cut(s) 599, 686, 715
HpyAV CCTTC 4 cut(s) 242, 516, 568, 781
HpyCH4III ACNGT 3 cut(s) 313, 330, 454
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 2 cut(s) 443, 704
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 83, 144
HpyF3I CTNAG 2 cut(s) 285, 540
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 4 cut(s) 472, 643, 673, 886
HspAI GCGC 4 cut(s) 425, 481, 735, 854
Kzo9I GATC 4 cut(s) 114, 159, 385, 676
LmnI GCTCC 4 cut(s) 38, 98, 349, 556
Lsp1109I GCAGC 3 cut(s) 256, 445, 804
LweI GCATC 4 cut(s) 307, 430, 612, 751
MaeII ACGT 1 cut(s) 150
MalI GATC 4 cut(s) 116, 161, 387, 678
MboI GATC 4 cut(s) 114, 159, 385, 676
MboII GAAGA 2 cut(s) 517, 527
MfeI CAATTG 2 cut(s) 295, 801
MflI RGATCY 2 cut(s) 159, 676
MhlI GDGCHC 2 cut(s) 284, 354
MluCI AATT 8 cut(s) 133, 181, 295, 365, 801, 817, 840, 858
MmeI TCCRAC 1 cut(s) 342
MnlI CCTC 7 cut(s) 42, 149, 253, 340, 405, 511, 765
MroXI GAANNNNTTC 1 cut(s) 726
MseI TTAA 2 cut(s) 873, 895
MslI CAYNNNNRTG 1 cut(s) 452
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 4 cut(s) 29, 593, 699, 732
MunI CAATTG 2 cut(s) 295, 801
Mva1269I GAATGC 1 cut(s) 856
MvaI CCWGG 4 cut(s) 29, 593, 699, 732
MvnI CGCG 1 cut(s) 856
MwoI GCNNNNNNNGC 3 cut(s) 79, 83, 144
NcoI CCATGG 1 cut(s) 468
NdeII GATC 4 cut(s) 114, 159, 385, 676
NlaIII CATG 4 cut(s) 472, 643, 673, 886
NlaIV GGNNCC 1 cut(s) 776
PctI GAATGC 1 cut(s) 856
PdmI GAANNNNTTC 1 cut(s) 726
PfeI GAWTC 1 cut(s) 289
PkrI GCNGC 3 cut(s) 271, 460, 794
Psp6I CCWGG 4 cut(s) 27, 591, 697, 730
PspFI CCCAGC 3 cut(s) 41, 273, 380
PspGI CCWGG 4 cut(s) 27, 591, 697, 730
PspN4I GGNNCC 1 cut(s) 776
PsuI RGATCY 2 cut(s) 159, 676
RsaI GTAC 2 cut(s) 310, 332
RsaNI GTAC 2 cut(s) 309, 331
RseI CAYNNNNRTG 1 cut(s) 452
SaqAI TTAA 2 cut(s) 873, 895
SatI GCNGC 3 cut(s) 270, 459, 793
Sau3AI GATC 4 cut(s) 114, 159, 385, 676
ScaI AGTACT 1 cut(s) 332
ScrFI CCNGG 4 cut(s) 29, 593, 699, 732
SduI GDGCHC 2 cut(s) 284, 354
SfaNI GCATC 4 cut(s) 307, 430, 612, 751
SfcI CTRYAG 1 cut(s) 106
SmiMI CAYNNNNRTG 1 cut(s) 452
Sse9I AATT 8 cut(s) 133, 181, 295, 365, 801, 817, 840, 858
SsiI CCGC 1 cut(s) 186
StyD4I CCNGG 4 cut(s) 27, 591, 697, 730
StyI CCWWGG 1 cut(s) 468
TaaI ACNGT 3 cut(s) 313, 330, 454
TaiI ACGT 1 cut(s) 153
TaqI TCGA 2 cut(s) 117, 685
TasI AATT 8 cut(s) 133, 181, 295, 365, 801, 817, 840, 858
TatI WGTACW 1 cut(s) 330
TfiI GAWTC 1 cut(s) 289
Tru1I TTAA 2 cut(s) 873, 895
Tru9I TTAA 2 cut(s) 873, 895
TscAI CASTG 1 cut(s) 457
TseI GCWGC 3 cut(s) 269, 458, 792
TspDTI ATGAA 4 cut(s) 261, 518, 528, 587
TspRI CASTG 1 cut(s) 457
XapI RAATTY 2 cut(s) 365, 817
XmnI GAANNNNTTC 1 cut(s) 726
ZrmI AGTACT 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.