pycom17g11350

This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP- glucose from Glc-1-P and ATP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0011236
Physical Location & Seq
Forward (+)
8900199 .. 8901143
945 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 690 bp
ATGGGTGGCTACAAAAATGAAGGCTTTGTTGAGGTTCTTGCTGCCCAGCAGAGCCCTGAGAATCCCAATTGGTTTCAGGGTACTGCGGATGCCGTGAGACAGTACTCGTGGTTGTTTGAGGAGCACAATGTGTTGGAATTTTTGGTTCTTGCTGGGGATCATTTGTATAGGATGGACTATGAGAGGTTTATTCAGGCGCATAGAGAAACTGATGCAGACATCACTGTGGCTGCTCTGCCCATGGATGAGAAGCGCACTACCGCCTTTGGTTTGATGAAGATCGATGAAGAGGGAAGGATAATTGAGTTTGCTGAGAAACCAAAAGGGGAGCAACTCAAAGCTATGAAGGTTGATACAACTATCCTGGGTCTTGATGATGAGAGAGCTAAAGAGATGCCTTATATTGCCAGCATGGGTATATATGTTGTGAGCAAAAATGTCATGTTAGATCTACTTAGAGACAAGTTTCCTGGTGCAAATGATTTCAGGAGTGAAGTTATTCCAGGCGCAACTTCCATTGGTTTGAGAGTAAGTTTTCATTCATATATTTTGTTCTGTAATTTCTACGAAAGATCAATCAAAAGAGGTGGAAAAGATTGGAATAGTTGTTGGTATTACATAATTGCAAATATCTTTCATTCGAAACTGAACAAATCCCTTTGTACTGAAAAAGATAGTATCCTAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko00520 ko01100 ko01110 ko02026 map00500 map00520 map01100 map01110 map02026
Pfam Domains
Protein Families
NTP_transferase

Protein Analysis

230

Amino Acids

26.29

Weight (kDa)

5.34

Isoelectric Point (pI)

38.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTP_transferase PF00483 10 - 171 2.1e-30 Nucleotidyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011236)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48300
fragaria_vesca FvH4_6g40220
malus_domestica MD09G1133900.v1.1 MD17G1122400.v1.1 MD17G1122900.v1.1
prunus_persica Prupe.3G192600_v2.0.a1
pyrus_communis pycom09g05520 pycom17g11260 pycom17g11350 pycom17g11450
rosa_chinensis RchiOBHm_Chr2g0155241
rosa_laevigata RLG00000020829
rosa_multiflora Rmu_sc0012066.1_g000006
rosa_roxburghii Rroxscaffold_2G00093840
rosa_rugosa Rorug02G0446300
rosa_samantha Rh2AG512700 Rh2BG523300 Rh2CG497700 Rh2DG533000
rosa_wichuraiana Rw2G042120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 86, 261
AclWI GGATC 1 cut(s) 165
AcsI RAATTY 1 cut(s) 137
AdeI CACNNNGTG 1 cut(s) 130
AfaI GTAC 3 cut(s) 82, 104, 664
AjnI CCWGG 3 cut(s) 363, 469, 502
AluBI AGCT 2 cut(s) 341, 386
AluI AGCT 2 cut(s) 341, 386
Alw21I GWGCWC 1 cut(s) 126
Alw26I GTCTC 2 cut(s) 91, 453
AlwI GGATC 1 cut(s) 165
ApeKI GCWGC 2 cut(s) 41, 230
ApoI RAATTY 1 cut(s) 137
Asp700I GAANNNNTTC 1 cut(s) 498
AspLEI GCGC 3 cut(s) 199, 255, 509
AsuII TTCGAA 1 cut(s) 641
BanII GRGCYC 1 cut(s) 56
BauI CACGAG 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 126
BbvI GCAGC 2 cut(s) 28, 217
BccI CCATC 1 cut(s) 166
BceAI ACGGC 1 cut(s) 77
BciT130I CCWGG 3 cut(s) 365, 471, 504
BciVI GTATCC 1 cut(s) 689
BcoDI GTCTC 2 cut(s) 91, 453
BfuI GTATCC 1 cut(s) 689
BglII AGATCT 1 cut(s) 448
BisI GCNGC 2 cut(s) 42, 231
BlsI GCNGC 2 cut(s) 43, 232
BmcAI AGTACT 1 cut(s) 104
Bme1390I CCNGG 3 cut(s) 365, 471, 504
BmrFI CCNGG 3 cut(s) 365, 471, 504
BmsI GCATC 3 cut(s) 79, 202, 384
Bpu14I TTCGAA 1 cut(s) 641
Bsa29I ATCGAT 1 cut(s) 282
BsaBI GATNNNNATC 1 cut(s) 278
BsaJI CCNNGG 2 cut(s) 240, 364
Bse8I GATNNNNATC 1 cut(s) 278
BseBI CCWGG 3 cut(s) 365, 471, 504
BseCI ATCGAT 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 240, 364
BseGI GGATG 3 cut(s) 94, 177, 250
BseJI GATNNNNATC 1 cut(s) 278
BseMII CTCAG 2 cut(s) 48, 303
BseRI GAGGAG 1 cut(s) 134
BseXI GCAGC 2 cut(s) 28, 217
BseYI CCCAGC 2 cut(s) 45, 152
BshVI ATCGAT 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 126
BsmAI GTCTC 2 cut(s) 91, 453
Bsp119I TTCGAA 1 cut(s) 641
Bsp1286I GDGCHC 2 cut(s) 56, 126
Bsp143I GATC 4 cut(s) 157, 279, 448, 572
Bsp19I CCATGG 1 cut(s) 240
BspACI CCGC 2 cut(s) 86, 261
BspCNI CTCAG 2 cut(s) 49, 304
BspDI ATCGAT 1 cut(s) 282
BspPI GGATC 1 cut(s) 165
BspT104I TTCGAA 1 cut(s) 641
BssECI CCNNGG 2 cut(s) 240, 364
BssMI GATC 4 cut(s) 157, 279, 448, 572
BssSI CACGAG 1 cut(s) 106
BssT1I CCWWGG 1 cut(s) 240
Bst2BI CACGAG 1 cut(s) 106
Bst2UI CCWGG 3 cut(s) 365, 471, 504
Bst4CI ACNGT 2 cut(s) 102, 226
Bst6I CTCTTC 1 cut(s) 282
BstBI TTCGAA 1 cut(s) 641
BstC8I GCNNGC 1 cut(s) 409
BstDEI CTNAG 3 cut(s) 57, 312, 455
BstDSI CCRYGG 1 cut(s) 240
BstF5I GGATG 3 cut(s) 94, 177, 250
BstHHI GCGC 3 cut(s) 199, 255, 509
BstKTI GATC 4 cut(s) 160, 282, 451, 575
BstMAI GTCTC 2 cut(s) 91, 453
BstMBI GATC 4 cut(s) 157, 279, 448, 572
BstNI CCWGG 3 cut(s) 365, 471, 504
BstSCI CCNGG 3 cut(s) 363, 469, 502
BstV1I GCAGC 2 cut(s) 28, 217
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
Bsu15I ATCGAT 1 cut(s) 282
BsuI GTATCC 1 cut(s) 689
BsuTUI ATCGAT 1 cut(s) 282
BtgI CCRYGG 1 cut(s) 240
BtsCI GGATG 3 cut(s) 94, 177, 250
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 409
CfoI GCGC 3 cut(s) 199, 255, 509
ClaI ATCGAT 1 cut(s) 282
Csp6I GTAC 3 cut(s) 81, 103, 663
CspCI CAANNNNNGTGG 2 cut(s) 568, 603
CviAII CATG 3 cut(s) 241, 412, 442
CviJI RGCY 6 cut(s) 9, 24, 54, 230, 341, 386
CviKI_1 RGCY 6 cut(s) 9, 24, 54, 230, 341, 386
CviQI GTAC 3 cut(s) 81, 103, 663
DdeI CTNAG 3 cut(s) 57, 312, 455
DpnI GATC 4 cut(s) 159, 281, 450, 574
DpnII GATC 4 cut(s) 157, 279, 448, 572
DraIII CACNNNGTG 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Eco130I CCWWGG 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 56
EcoRII CCWGG 3 cut(s) 363, 469, 502
EcoT14I CCWWGG 1 cut(s) 240
EcoT38I GRGCYC 1 cut(s) 56
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 3 cut(s) 244, 415, 445
FatI CATG 3 cut(s) 240, 411, 441
Fnu4HI GCNGC 2 cut(s) 42, 231
FokI GGATG 3 cut(s) 101, 184, 257
FriOI GRGCYC 1 cut(s) 56
Fsp4HI GCNGC 2 cut(s) 42, 231
GlaI GCGC 3 cut(s) 198, 254, 508
GluI GCNGC 2 cut(s) 42, 231
GsaI CCCAGC 2 cut(s) 49, 156
HhaI GCGC 3 cut(s) 199, 255, 509
Hin1II CATG 3 cut(s) 244, 415, 445
Hin6I GCGC 3 cut(s) 197, 253, 507
HinP1I GCGC 3 cut(s) 197, 253, 507
HinfI GANTC 1 cut(s) 61
Hpy188III TCNNGA 2 cut(s) 371, 487
HpyAV CCTTC 3 cut(s) 14, 288, 340
HpyCH4III ACNGT 2 cut(s) 102, 226
HpyCH4V TGCA 3 cut(s) 215, 476, 626
HpyF3I CTNAG 3 cut(s) 57, 312, 455
Hsp92II CATG 3 cut(s) 244, 415, 445
HspAI GCGC 3 cut(s) 197, 253, 507
Kzo9I GATC 4 cut(s) 157, 279, 448, 572
LmnI GCTCC 2 cut(s) 121, 328
Lsp1109I GCAGC 2 cut(s) 28, 217
LweI GCATC 3 cut(s) 79, 202, 384
MalI GATC 4 cut(s) 159, 281, 450, 574
MboI GATC 4 cut(s) 157, 279, 448, 572
MboII GAAGA 2 cut(s) 289, 299
MfeI CAATTG 1 cut(s) 67
MflI RGATCY 1 cut(s) 448
MhlI GDGCHC 2 cut(s) 56, 126
MluCI AATT 6 cut(s) 67, 137, 300, 559, 621, 685
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 5 cut(s) 25, 112, 177, 283, 578
MroXI GAANNNNTTC 1 cut(s) 498
MslI CAYNNNNRTG 1 cut(s) 224
MspR9I CCNGG 3 cut(s) 365, 471, 504
MunI CAATTG 1 cut(s) 67
MvaI CCWGG 3 cut(s) 365, 471, 504
NcoI CCATGG 1 cut(s) 240
NdeII GATC 4 cut(s) 157, 279, 448, 572
NlaIII CATG 3 cut(s) 244, 415, 445
NspV TTCGAA 1 cut(s) 641
PdmI GAANNNNTTC 1 cut(s) 498
PfeI GAWTC 1 cut(s) 61
PkrI GCNGC 2 cut(s) 43, 232
Psp6I CCWGG 3 cut(s) 363, 469, 502
PspFI CCCAGC 2 cut(s) 45, 152
PspGI CCWGG 3 cut(s) 363, 469, 502
PsuI RGATCY 1 cut(s) 448
RsaI GTAC 3 cut(s) 82, 104, 664
RsaNI GTAC 3 cut(s) 81, 103, 663
RseI CAYNNNNRTG 1 cut(s) 224
SatI GCNGC 2 cut(s) 42, 231
Sau3AI GATC 4 cut(s) 157, 279, 448, 572
ScaI AGTACT 1 cut(s) 104
ScrFI CCNGG 3 cut(s) 365, 471, 504
SduI GDGCHC 2 cut(s) 56, 126
SetI ASST 6 cut(s) 36, 188, 343, 351, 388, 589
SfaNI GCATC 3 cut(s) 79, 202, 384
SfuI TTCGAA 1 cut(s) 641
SmiMI CAYNNNNRTG 1 cut(s) 224
Sse9I AATT 6 cut(s) 67, 137, 300, 559, 621, 685
SsiI CCGC 2 cut(s) 86, 261
StyD4I CCNGG 3 cut(s) 363, 469, 502
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 2 cut(s) 102, 226
TaqI TCGA 2 cut(s) 282, 641
TasI AATT 6 cut(s) 67, 137, 300, 559, 621, 685
TatI WGTACW 2 cut(s) 102, 662
TfiI GAWTC 1 cut(s) 61
TscAI CASTG 1 cut(s) 229
TseI GCWGC 2 cut(s) 41, 230
TspDTI ATGAA 7 cut(s) 33, 290, 300, 359, 527, 531, 626
TspRI CASTG 1 cut(s) 229
XapI RAATTY 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 498
ZrmI AGTACT 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.