Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006321

Physical Location & Seq

Genomic Coordinates Forward (+)

10302157 .. 10303177

Gene Structure 1021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGAGTCTGGCGAGTACGAGGAAGGCATGGTGGTTGAATTCTCTGCAAATGGGAATTCCATGAAAGCAACTGAGGTTCAGGCCAAGCTTGATGAAGGAAACATTCAGGAGGCAGAATCTTCGTTACGAGAAGGGCTATCACTCAATTTCGAGGAAGCAAGAGCCCTTCTTGGAAAGCTGGAGTATCAAAGAGGTAACCTAGAAGGTGCACTTCGTGTGTTTGATGGCATTGATCTTCAAGATGCCATAGGGCGATTGCAACCTAATCTTGCTGAGAAAACACCTTCTAAGAAGGGCCGAACTCGTTCTGACTCACAGCATACAGTCTCACAGCATGCTGCTACTCTCATTCTTGATGCCATATACTTAAAAGCCAAGTCTCTACAAAAGCTTGGGAGATTAAAAGAAGCTGCTAATGAATGCAACAATGTGCTTGATGCTGTGGAAAAAATATTCCATCAGGGCATACCTGATGCACAAGTAGATAGTAGATTACAAGAGACAGTCAGCCAAGCTGTGGAGCTTCTTCCTGAGCTTTGGAAGCAATCTGGCCACCCTCAAGAAGCAATATCTACTTATAGACGTGCCCTACTTAGTCAATGGAACCTTGACAATGACCGCTGTGCAAGAATTCAGAAAGGATTTGCGGTGTTTTTGCTGTACAGTGGAGTAGAGGCTGGTCCACCCAGTTTAGGTGCTCAGGTTGAAGGCTCATGTGTCCCTAAAAATAACCTGGAGGAGGCTATTCTGCTTTTGAGATCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005516

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_7 TPR_8

Protein Analysis

256

Amino Acids

28.09

Weight (kDa)

5.12

Isoelectric Point (pI)

44.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43040 AT2G43040
fragaria_vesca	FvH4_6g38960 FvH4_6g38960 FvH4_6g38960 FvH4_6g38960 FvH4_6g38960
malus_domestica	MD09G1145800.v1.1 MD17G1132300.v1.1
prunus_persica	Prupe.3G180000_v2.0.a1 Prupe.3G180000_v2.0.a1 Prupe.3G180000_v2.0.a1
pyrus_communis	pycom09g06610 pycom17g12580 pycom17g12590
rosa_chinensis	RchiOBHm_Chr2g0152551
rosa_laevigata	RLG00000020645
rosa_multiflora	Rmu_co8464321.1_g000001 Rmu_sc0014904.1_g000001 Rmu_sc0027677.1_g000002
rosa_roxburghii	Rroxscaffold_2G00095610
rosa_rugosa	Rorug02G0434500
rosa_samantha	Rh2AG495700 Rh2BG507500 Rh2CG481900 Rh2DG518800
rosa_wichuraiana	Rw2G040780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	517
AciI	CCGC	2 cut(s)	619, 647
AclWI	GGATC	1 cut(s)	753
AcoI	YGGCCR	1 cut(s)	550
AcsI	RAATTY	3 cut(s)	38, 55, 630
AdeI	CACNNNGTG	1 cut(s)	215
AfaI	GTAC	2 cut(s)	17, 662
AfiI	CCNNNNNNNGG	3 cut(s)	517, 692, 739
AgsI	TTSAA	3 cut(s)	38, 239, 707
AjiI	CACGTC	1 cut(s)	584
AjnI	CCWGG	1 cut(s)	732
AluBI	AGCT	7 cut(s)	88, 178, 391, 410, 515, 523, 535
AluI	AGCT	7 cut(s)	88, 178, 391, 410, 515, 523, 535
Alw21I	GWGCWC	2 cut(s)	211, 700
Alw26I	GTCTC	3 cut(s)	331, 384, 494
Alw44I	GTGCAC	1 cut(s)	207
AlwI	GGATC	1 cut(s)	753
AoxI	GGCC	3 cut(s)	81, 295, 550
ApaLI	GTGCAC	1 cut(s)	207
ApeKI	GCWGC	2 cut(s)	338, 410
ApoI	RAATTY	3 cut(s)	38, 55, 630
Asp700I	GAANNNNTTC	1 cut(s)	304
AspS9I	GGNCC	2 cut(s)	295, 680
AvaII	GGWCC	1 cut(s)	680
BaeGI	GKGCMC	2 cut(s)	211, 589
BalI	TGGCCA	1 cut(s)	552
BanII	GRGCYC	1 cut(s)	166
Bbv12I	GWGCWC	2 cut(s)	211, 700
BbvI	GCAGC	2 cut(s)	325, 397
BccI	CCATC	2 cut(s)	218, 465
BcgI	CGANNNNNNTGC	2 cut(s)	102, 136
BciT130I	CCWGG	1 cut(s)	734
BcoDI	GTCTC	3 cut(s)	331, 384, 494
BfaI	CTAG	1 cut(s)	200
BisI	GCNGC	2 cut(s)	339, 411
BlsI	GCNGC	2 cut(s)	340, 412
Bme1390I	CCNGG	1 cut(s)	734
Bme18I	GGWCC	1 cut(s)	680
BmgBI	CACGTC	1 cut(s)	584
BmgT120I	GGNCC	2 cut(s)	295, 680
BmiI	GGNNCC	1 cut(s)	605
BmrFI	CCNGG	1 cut(s)	734
BmrI	ACTGGG	1 cut(s)	681
BmsI	GCATC	4 cut(s)	232, 346, 427, 463
BmuI	ACTGGG	1 cut(s)	681
BpmI	CTGGAG	2 cut(s)	200, 755
Bpu10I	CCTNAGC	2 cut(s)	531, 699
BpuEI	CTTGAG	1 cut(s)	543
Bsc4I	CCNNNNNNNGG	3 cut(s)	517, 692, 739
Bse1I	ACTGG	1 cut(s)	687
BseBI	CCWGG	1 cut(s)	734
BseLI	CCNNNNNNNGG	3 cut(s)	517, 692, 739
BseMII	CTCAG	4 cut(s)	63, 264, 522, 713
BseNI	ACTGG	1 cut(s)	687
BseRI	GAGGAG	1 cut(s)	752
BseSI	GKGCMC	2 cut(s)	211, 589
BseXI	GCAGC	2 cut(s)	325, 397
BshFI	GGCC	3 cut(s)	83, 297, 552
BsiHKAI	GWGCWC	2 cut(s)	211, 700
BslFI	GGGAC	1 cut(s)	704
BslI	CCNNNNNNNGG	3 cut(s)	517, 692, 739
BsmAI	GTCTC	3 cut(s)	331, 384, 494
BsmFI	GGGAC	1 cut(s)	704
BsmI	GAATGC	1 cut(s)	425
BsnI	GGCC	3 cut(s)	83, 297, 552
Bsp1286I	GDGCHC	4 cut(s)	166, 211, 589, 700
Bsp1407I	TGTACA	1 cut(s)	660
Bsp143I	GATC	2 cut(s)	232, 758
BspACI	CCGC	2 cut(s)	619, 647
BspANI	GGCC	3 cut(s)	83, 297, 552
BspCNI	CTCAG	4 cut(s)	64, 265, 523, 712
BspLI	GGNNCC	1 cut(s)	605
BspPI	GGATC	1 cut(s)	753
BsrGI	TGTACA	1 cut(s)	660
BsrI	ACTGG	1 cut(s)	687
BssMI	GATC	2 cut(s)	232, 758
Bst2UI	CCWGG	1 cut(s)	734
Bst4CI	ACNGT	3 cut(s)	325, 505, 665
BstAUI	TGTACA	1 cut(s)	660
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	6 cut(s)	72, 273, 288, 531, 593, 699
BstEII	GGTNACC	1 cut(s)	194
BstENI	CCTNNNNNAGG	1 cut(s)	737
BstKTI	GATC	2 cut(s)	235, 761
BstMAI	GTCTC	3 cut(s)	331, 384, 494
BstMBI	GATC	2 cut(s)	232, 758
BstMWI	GCNNNNNNNGC	1 cut(s)	541
BstNI	CCWGG	1 cut(s)	734
BstNSI	RCATGY	1 cut(s)	338
BstPI	GGTNACC	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	732
BstSLI	GKGCMC	2 cut(s)	211, 589
BstV1I	GCAGC	2 cut(s)	325, 397
BstX2I	RGATCY	1 cut(s)	758
BstYI	RGATCY	1 cut(s)	758
BsuRI	GGCC	3 cut(s)	83, 297, 552
BtrI	CACGTC	1 cut(s)	584
BtsIMutI	CAGTG	1 cut(s)	670
Cac8I	GCNNGC	1 cut(s)	336
Cfr13I	GGNCC	2 cut(s)	295, 680
Csp6I	GTAC	2 cut(s)	16, 661
CviAII	CATG	4 cut(s)	28, 61, 335, 714
CviQI	GTAC	2 cut(s)	16, 661
DdeI	CTNAG	6 cut(s)	72, 273, 288, 531, 593, 699
DpnI	GATC	2 cut(s)	234, 760
DpnII	GATC	2 cut(s)	232, 758
DraIII	CACNNNGTG	1 cut(s)	215
EaeI	YGGCCR	1 cut(s)	550
Eco24I	GRGCYC	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	680
Eco91I	GGTNACC	1 cut(s)	194
EcoNI	CCTNNNNNAGG	1 cut(s)	737
EcoO65I	GGTNACC	1 cut(s)	194
EcoRI	GAATTC	3 cut(s)	38, 55, 630
EcoRII	CCWGG	1 cut(s)	732
EcoT38I	GRGCYC	1 cut(s)	166
FaeI	CATG	4 cut(s)	31, 64, 338, 717
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FaqI	GGGAC	1 cut(s)	704
FatI	CATG	4 cut(s)	27, 60, 334, 713
Fnu4HI	GCNGC	2 cut(s)	339, 411
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	2 cut(s)	339, 411
FspBI	CTAG	1 cut(s)	200
GluI	GCNGC	2 cut(s)	339, 411
GsuI	CTGGAG	2 cut(s)	200, 755
HaeIII	GGCC	3 cut(s)	83, 297, 552
Hin1II	CATG	4 cut(s)	31, 64, 338, 717
HindIII	AAGCTT	2 cut(s)	86, 389
HinfI	GANTC	3 cut(s)	5, 116, 311
Hpy166II	GTNNAC	2 cut(s)	209, 683
Hpy188I	TCNGA	2 cut(s)	310, 636
Hpy188III	TCNNGA	5 cut(s)	107, 239, 353, 530, 560
Hpy8I	GTNNAC	2 cut(s)	209, 683
HpyAV	CCTTC	8 cut(s)	17, 89, 125, 176, 197, 286, 294, 701
HpyCH4III	ACNGT	3 cut(s)	325, 505, 665
HpyCH4IV	ACGT	1 cut(s)	583
HpyCH4V	TGCA	6 cut(s)	47, 209, 259, 423, 476, 626
HpyF10VI	GCNNNNNNNGC	1 cut(s)	541
HpyF3I	CTNAG	6 cut(s)	72, 273, 288, 531, 593, 699
HpySE526I	ACGT	1 cut(s)	583
Hsp92II	CATG	4 cut(s)	31, 64, 338, 717
Kzo9I	GATC	2 cut(s)	232, 758
LmnI	GCTCC	1 cut(s)	520
Lsp1109I	GCAGC	2 cut(s)	325, 397
LweI	GCATC	4 cut(s)	232, 346, 427, 463
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	1 cut(s)	583
MaeIII	GTNAC	2 cut(s)	123, 194
MalI	GATC	2 cut(s)	234, 760
MboI	GATC	2 cut(s)	232, 758
MboII	GAAGA	3 cut(s)	111, 227, 518
MflI	RGATCY	1 cut(s)	758
MhlI	GDGCHC	4 cut(s)	166, 211, 589, 700
MlsI	TGGCCA	1 cut(s)	552
MluCI	AATT	4 cut(s)	38, 55, 145, 630
MluNI	TGGCCA	1 cut(s)	552
MlyI	GAGTC	2 cut(s)	14, 305
MnlI	CCTC	9 cut(s)	13, 67, 103, 145, 185, 567, 667, 730, 733
Mox20I	TGGCCA	1 cut(s)	552
MroXI	GAANNNNTTC	1 cut(s)	304
MscI	TGGCCA	1 cut(s)	552
MseI	TTAA	2 cut(s)	368, 401
Msp20I	TGGCCA	1 cut(s)	552
MspA1I	CMGCKG	1 cut(s)	621
MspR9I	CCNGG	1 cut(s)	734
Mva1269I	GAATGC	1 cut(s)	425
MvaI	CCWGG	1 cut(s)	734
MwoI	GCNNNNNNNGC	1 cut(s)	541
NdeII	GATC	2 cut(s)	232, 758
NlaIII	CATG	4 cut(s)	31, 64, 338, 717
NlaIV	GGNNCC	1 cut(s)	605
NspI	RCATGY	1 cut(s)	338
PaeI	GCATGC	1 cut(s)	338
PctI	GAATGC	1 cut(s)	425
PdmI	GAANNNNTTC	1 cut(s)	304
PfeI	GAWTC	1 cut(s)	116
PflMI	CCANNNNNTGG	1 cut(s)	517
PkrI	GCNGC	2 cut(s)	340, 412
PleI	GAGTC	2 cut(s)	13, 305
PpsI	GAGTC	2 cut(s)	13, 305
Psp6I	CCWGG	1 cut(s)	732
PspEI	GGTNACC	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	732
PspN4I	GGNNCC	1 cut(s)	605
PspPI	GGNCC	2 cut(s)	295, 680
PsuI	RGATCY	1 cut(s)	758
RsaI	GTAC	2 cut(s)	17, 662
RsaNI	GTAC	2 cut(s)	16, 661
SaqAI	TTAA	2 cut(s)	368, 401
SatI	GCNGC	2 cut(s)	339, 411
Sau3AI	GATC	2 cut(s)	232, 758
Sau96I	GGNCC	2 cut(s)	295, 680
SchI	GAGTC	2 cut(s)	14, 305
ScrFI	CCNGG	1 cut(s)	734
SduI	GDGCHC	4 cut(s)	166, 211, 589, 700
SfaNI	GCATC	4 cut(s)	232, 346, 427, 463
SinI	GGWCC	1 cut(s)	680
SmlI	CTYRAG	1 cut(s)	558
SmoI	CTYRAG	1 cut(s)	558
SphI	GCATGC	1 cut(s)	338
Sse9I	AATT	4 cut(s)	38, 55, 145, 630
SsiI	CCGC	2 cut(s)	619, 647
SspI	AATATT	1 cut(s)	453
SspMI	CTAG	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	732
TaaI	ACNGT	3 cut(s)	325, 505, 665
TaiI	ACGT	1 cut(s)	586
TaqI	TCGA	1 cut(s)	150
TasI	AATT	4 cut(s)	38, 55, 145, 630
TatI	WGTACW	1 cut(s)	660
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	2 cut(s)	368, 401
Tru9I	TTAA	2 cut(s)	368, 401
TscAI	CASTG	1 cut(s)	670
TseI	GCWGC	2 cut(s)	338, 410
TspDTI	ATGAA	3 cut(s)	77, 108, 432
TspRI	CASTG	1 cut(s)	670
Van91I	CCANNNNNTGG	1 cut(s)	517
VneI	GTGCAC	1 cut(s)	207
VpaK11BI	GGWCC	1 cut(s)	680
XagI	CCTNNNNNAGG	1 cut(s)	737
XapI	RAATTY	3 cut(s)	38, 55, 630
XceI	RCATGY	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	304
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.