pycom17g12640

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0006895
Physical Location & Seq
Reverse (-)
10395959 .. 10398961
3003 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 969 bp
ATGAGGCGGCCGTTTGACTGCGTCCGCTCTTGTTTTTATTTTTTATTTTTTTATATATATTCGAGTCCCGCACGCCATTCAGTGTTAATTTTTAGACTTGTCCTCTGCAACTTCAGCGCTCTGCACGCATATGCCATAACAATTCATAATCCATCAGCAAAACCCATCATCCTCTGCATCTTCTCTCTTGCTCTAATCTCATCTGATCAGTGTGTAGCAGCAATGCCTGAGAAAATGACTGCCGAGGATCTTTTGAACAACATTGTGGGCACACTTGCTGATAAAAAACAGAAATCTGGTTCTTTTTTTGGGGAAGAGACATCAAGCTCAGTCACTACTCAGTTCAACTTCAACCGGCTGTTTGGACGCCAGAAACCTGTCCACCACATTCTGGGTGGAGGAAAATCTGCTGATGTCTTGTTGTGGAGGAACAAAAAAATTTCGGCTAGTGTTTTAACTGCTGCGACTGTTGTCTGGGTGCTCTTCGAATGGCTCAATTATCATTTCTTGACTCTTGTGGGGTTTGGTTTGGTTCTTGGCATGATTGCTCAGTTTCTGTGGTCAAATTTTTCGGGCATGATTAACAGGTCCCCATCTAAAGTACCTCGACTTGTTCTGCCTAAGGACTTATTTGTCAATATTGCCGTCTCAATTGGTGCTGAAATTAATCGAGGGTTGGCATTTGTTCAAGATGTGGCATGTGAAGGAAATGTGAAGCAATTTCTTGTGGTTGTAGTAAGCTTGTGGATTGCTGCTGTGATAGGAAGCTGGTGCAATTTTCTGACCGTTGTGTACATTGGTTTTGTTGCTGCTCACACATTGCCGGTTCTGTATGAGAGATATGAGGATCAGGTTGACAACTTTGTATATCAGGTCCTCGGGCAGCTTCAACACAATTACCGGAAGTTGGATACTGGCGTCCTCAGCAAGATCCCTAGTGCAAAGCTGAACTGGAAGAAGAACGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Reticulon

Protein Analysis

323

Amino Acids

36.17

Weight (kDa)

9.29

Isoelectric Point (pI)

38.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Reticulon PF02453 137 - 292 2.8e-54 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 632
AccB7I CCANNNNNTGG 1 cut(s) 391
AccBSI CCGCTC 1 cut(s) 27
AciI CCGC 3 cut(s) 7, 25, 69
AclWI GGATC 3 cut(s) 255, 855, 925
AcoI YGGCCR 1 cut(s) 8
AcsI RAATTY 2 cut(s) 438, 565
AcuI CTGAAG 1 cut(s) 97
AcyI GRCGYC 2 cut(s) 367, 918
AfaI GTAC 2 cut(s) 603, 794
AfeI AGCGCT 1 cut(s) 118
AfiI CCNNNNNNNGG 2 cut(s) 391, 907
AgsI TTSAA 5 cut(s) 256, 346, 352, 689, 890
AluBI AGCT 5 cut(s) 327, 741, 768, 886, 946
AluI AGCT 5 cut(s) 327, 741, 768, 886, 946
Alw21I GWGCWC 1 cut(s) 483
Alw26I GTCTC 2 cut(s) 311, 652
AlwI GGATC 3 cut(s) 255, 855, 925
AlwNI CAGNNNCTG 1 cut(s) 556
Ama87I CYCGRG 1 cut(s) 878
Aor51HI AGCGCT 1 cut(s) 118
AoxI GGCC 1 cut(s) 8
ApeKI GCWGC 5 cut(s) 218, 461, 752, 809, 883
ApoI RAATTY 2 cut(s) 438, 565
AseI ATTAAT 1 cut(s) 666
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 2 cut(s) 588, 874
AsuII TTCGAA 1 cut(s) 486
AvaI CYCGRG 1 cut(s) 878
AvaII GGWCC 2 cut(s) 588, 874
AxyI CCTNAGG 1 cut(s) 621
BaeGI GKGCMC 1 cut(s) 272
BaeI ACNNNNGTAYC 2 cut(s) 903, 936
Bbv12I GWGCWC 1 cut(s) 483
BbvCI CCTCAGC 1 cut(s) 923
BbvI GCAGC 5 cut(s) 230, 448, 739, 796, 895
BccI CCATC 3 cut(s) 160, 173, 601
BceAI ACGGC 1 cut(s) 629
BciVI GTATCC 1 cut(s) 904
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 2 cut(s) 311, 652
BfaI CTAG 2 cut(s) 447, 936
BfoI RGCGCY 1 cut(s) 120
BfuI GTATCC 1 cut(s) 904
BisI GCNGC 6 cut(s) 8, 219, 462, 753, 810, 884
BlsI GCNGC 6 cut(s) 9, 220, 463, 754, 811, 885
Bme18I GGWCC 2 cut(s) 588, 874
BmeT110I CYCGRG 1 cut(s) 878
BmgT120I GGNCC 2 cut(s) 588, 874
BmiI GGNNCC 1 cut(s) 590
BmsI GCATC 1 cut(s) 186
BoxI GACNNNNGTC 1 cut(s) 470
Bpu10I CCTNAGC 1 cut(s) 923
Bpu14I TTCGAA 1 cut(s) 486
BsaHI GRCGYC 2 cut(s) 367, 918
BsaJI CCNNGG 2 cut(s) 243, 877
BsaWI WCCGGW 1 cut(s) 900
Bsc4I CCNNNNNNNGG 2 cut(s) 391, 907
Bse118I RCCGGY 2 cut(s) 354, 823
Bse1I ACTGG 2 cut(s) 919, 956
Bse21I CCTNAGG 1 cut(s) 621
Bse3DI GCAATG 2 cut(s) 228, 818
BseDI CCNNGG 2 cut(s) 243, 877
BseGI GGATG 1 cut(s) 168
BseLI CCNNNNNNNGG 2 cut(s) 391, 907
BseMI GCAATG 2 cut(s) 228, 818
BseMII CTCAG 5 cut(s) 219, 342, 353, 563, 937
BseNI ACTGG 2 cut(s) 919, 956
BseSI GKGCMC 1 cut(s) 272
BseX3I CGGCCG 1 cut(s) 8
BseXI GCAGC 5 cut(s) 230, 448, 739, 796, 895
BsgI GTGCAG 1 cut(s) 107
Bsh1285I CGRYCG 1 cut(s) 11
BshFI GGCC 1 cut(s) 10
BsiEI CGRYCG 1 cut(s) 11
BsiHKAI GWGCWC 1 cut(s) 483
BsiHKCI CYCGRG 1 cut(s) 878
BsiSI CCGG 3 cut(s) 355, 824, 901
BslFI GGGAC 2 cut(s) 51, 574
BslI CCNNNNNNNGG 2 cut(s) 391, 907
BsmAI GTCTC 2 cut(s) 311, 652
BsmBI CGTCTC 1 cut(s) 652
BsmFI GGGAC 2 cut(s) 51, 574
BsnI GGCC 1 cut(s) 10
BsoBI CYCGRG 1 cut(s) 878
Bsp119I TTCGAA 1 cut(s) 486
Bsp1286I GDGCHC 2 cut(s) 272, 483
Bsp1407I TGTACA 1 cut(s) 792
Bsp143I GATC 4 cut(s) 205, 247, 847, 930
BspACI CCGC 3 cut(s) 7, 25, 69
BspANI GGCC 1 cut(s) 10
BspCNI CTCAG 5 cut(s) 220, 341, 352, 562, 936
BspLI GGNNCC 1 cut(s) 590
BspPI GGATC 3 cut(s) 255, 855, 925
BspQI GCTCTTC 1 cut(s) 488
BspT104I TTCGAA 1 cut(s) 486
BsrBI CCGCTC 1 cut(s) 27
BsrDI GCAATG 2 cut(s) 228, 818
BsrFI RCCGGY 2 cut(s) 354, 823
BsrGI TGTACA 1 cut(s) 792
BsrI ACTGG 2 cut(s) 919, 956
BssAI RCCGGY 2 cut(s) 354, 823
BssECI CCNNGG 2 cut(s) 243, 877
BssMI GATC 4 cut(s) 205, 247, 847, 930
BssNI GRCGYC 2 cut(s) 367, 918
Bst4CI ACNGT 2 cut(s) 469, 787
Bst6I CTCTTC 2 cut(s) 309, 488
BstACI GRCGYC 2 cut(s) 367, 918
BstAUI TGTACA 1 cut(s) 792
BstBI TTCGAA 1 cut(s) 486
BstC8I GCNNGC 2 cut(s) 73, 126
BstDEI CTNAG 6 cut(s) 228, 328, 339, 549, 621, 923
BstF5I GGATG 1 cut(s) 168
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 4 cut(s) 208, 250, 850, 933
BstMAI GTCTC 2 cut(s) 311, 652
BstMBI GATC 4 cut(s) 205, 247, 847, 930
BstMCI CGRYCG 1 cut(s) 11
BstMWI GCNNNNNNNGC 3 cut(s) 114, 125, 924
BstNSI RCATGY 1 cut(s) 702
BstPAI GACNNNNGTC 1 cut(s) 470
BstSLI GKGCMC 1 cut(s) 272
BstV1I GCAGC 5 cut(s) 230, 448, 739, 796, 895
BstX2I RGATCY 2 cut(s) 247, 930
BstYI RGATCY 2 cut(s) 247, 930
BstZI CGGCCG 1 cut(s) 8
Bsu36I CCTNAGG 1 cut(s) 621
BsuI GTATCC 1 cut(s) 904
BsuRI GGCC 1 cut(s) 10
BtsCI GGATG 1 cut(s) 168
BtsIMutI CAGTG 2 cut(s) 87, 215
Cac8I GCNNGC 2 cut(s) 73, 126
CaiI CAGNNNCTG 1 cut(s) 556
CfoI GCGC 1 cut(s) 119
Cfr10I RCCGGY 2 cut(s) 354, 823
Cfr13I GGNCC 2 cut(s) 588, 874
CseI GACGC 3 cut(s) 10, 375, 907
Csp6I GTAC 2 cut(s) 602, 793
CviAII CATG 3 cut(s) 541, 577, 699
CviJI RGCY 9 cut(s) 10, 327, 358, 446, 493, 741, 768, 886, 946
CviKI_1 RGCY 9 cut(s) 10, 327, 358, 446, 493, 741, 768, 886, 946
CviQI GTAC 2 cut(s) 602, 793
DdeI CTNAG 6 cut(s) 228, 328, 339, 549, 621, 923
DpnI GATC 4 cut(s) 207, 249, 849, 932
DpnII GATC 4 cut(s) 205, 247, 847, 930
DrdI GACNNNNNNGTC 1 cut(s) 632
DseDI GACNNNNNNGTC 1 cut(s) 632
EaeI YGGCCR 1 cut(s) 8
EagI CGGCCG 1 cut(s) 8
Eam1104I CTCTTC 2 cut(s) 309, 488
EarI CTCTTC 2 cut(s) 309, 488
EclXI CGGCCG 1 cut(s) 8
Eco47I GGWCC 2 cut(s) 588, 874
Eco47III AGCGCT 1 cut(s) 118
Eco52I CGGCCG 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 97
Eco81I CCTNAGG 1 cut(s) 621
Eco88I CYCGRG 1 cut(s) 878
EcoO109I RGGNCCY 2 cut(s) 588, 874
Esp3I CGTCTC 1 cut(s) 652
FaeI CATG 3 cut(s) 544, 580, 702
FaqI GGGAC 2 cut(s) 51, 574
FatI CATG 3 cut(s) 540, 576, 698
FauI CCCGC 1 cut(s) 76
FauNDI CATATG 1 cut(s) 130
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 6 cut(s) 8, 219, 462, 753, 810, 884
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 6 cut(s) 8, 219, 462, 753, 810, 884
FspBI CTAG 2 cut(s) 447, 936
GlaI GCGC 1 cut(s) 118
GluI GCNGC 6 cut(s) 8, 219, 462, 753, 810, 884
HaeII RGCGCY 1 cut(s) 120
HaeIII GGCC 1 cut(s) 10
HapII CCGG 3 cut(s) 355, 824, 901
HgaI GACGC 3 cut(s) 10, 375, 907
HhaI GCGC 1 cut(s) 119
Hin1I GRCGYC 2 cut(s) 367, 918
Hin1II CATG 3 cut(s) 544, 580, 702
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HincII GTYRAC 1 cut(s) 856
HindII GTYRAC 1 cut(s) 856
HindIII AAGCTT 1 cut(s) 739
HinfI GANTC 2 cut(s) 64, 511
HpaII CCGG 3 cut(s) 355, 824, 901
Hpy166II GTNNAC 3 cut(s) 382, 793, 856
Hpy188I TCNGA 2 cut(s) 205, 783
Hpy188III TCNNGA 2 cut(s) 508, 689
Hpy8I GTNNAC 3 cut(s) 382, 793, 856
HpyAV CCTTC 1 cut(s) 698
HpyCH4III ACNGT 2 cut(s) 469, 787
HpyCH4V TGCA 5 cut(s) 108, 124, 177, 774, 941
HpyF10VI GCNNNNNNNGC 3 cut(s) 114, 125, 924
HpyF3I CTNAG 6 cut(s) 228, 328, 339, 549, 621, 923
Hsp92I GRCGYC 2 cut(s) 367, 918
Hsp92II CATG 3 cut(s) 544, 580, 702
HspAI GCGC 1 cut(s) 117
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 4 cut(s) 205, 247, 847, 930
LguI GCTCTTC 1 cut(s) 488
Lsp1109I GCAGC 5 cut(s) 230, 448, 739, 796, 895
LweI GCATC 1 cut(s) 186
MaeI CTAG 2 cut(s) 447, 936
MaeIII GTNAC 1 cut(s) 331
MalI GATC 4 cut(s) 207, 249, 849, 932
MbiI CCGCTC 1 cut(s) 27
MboI GATC 4 cut(s) 205, 247, 847, 930
MboII GAAGA 4 cut(s) 172, 326, 475, 967
MfeI CAATTG 1 cut(s) 651
MflI RGATCY 2 cut(s) 247, 930
MhlI GDGCHC 2 cut(s) 272, 483
MlyI GAGTC 2 cut(s) 73, 505
MmeI TCCRAC 1 cut(s) 888
MseI TTAA 4 cut(s) 86, 455, 582, 666
MslI CAYNNNNRTG 1 cut(s) 129
MspI CCGG 3 cut(s) 355, 824, 901
MunI CAATTG 1 cut(s) 651
MwoI GCNNNNNNNGC 3 cut(s) 114, 125, 924
NdeI CATATG 1 cut(s) 130
NdeII GATC 4 cut(s) 205, 247, 847, 930
NlaIII CATG 3 cut(s) 544, 580, 702
NlaIV GGNNCC 1 cut(s) 590
NmeAIII GCCGAG 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 331
NspI RCATGY 1 cut(s) 702
NspV TTCGAA 1 cut(s) 486
PciSI GCTCTTC 1 cut(s) 488
PflFI GACNNNGTC 1 cut(s) 20
PflMI CCANNNNNTGG 1 cut(s) 391
PkrI GCNGC 6 cut(s) 9, 220, 463, 754, 811, 885
PleI GAGTC 2 cut(s) 72, 505
PpsI GAGTC 2 cut(s) 72, 505
PpuMI RGGWCCY 2 cut(s) 588, 874
PshAI GACNNNNGTC 1 cut(s) 470
PshBI ATTAAT 1 cut(s) 666
Psp5II RGGWCCY 2 cut(s) 588, 874
PspN4I GGNNCC 1 cut(s) 590
PspPI GGNCC 2 cut(s) 588, 874
PspPPI RGGWCCY 2 cut(s) 588, 874
PstNI CAGNNNCTG 1 cut(s) 556
PsuI RGATCY 2 cut(s) 247, 930
PsyI GACNNNGTC 1 cut(s) 20
RsaI GTAC 2 cut(s) 603, 794
RsaNI GTAC 2 cut(s) 602, 793
RseI CAYNNNNRTG 1 cut(s) 129
SapI GCTCTTC 1 cut(s) 488
SaqAI TTAA 4 cut(s) 86, 455, 582, 666
SatI GCNGC 6 cut(s) 8, 219, 462, 753, 810, 884
Sau3AI GATC 4 cut(s) 205, 247, 847, 930
Sau96I GGNCC 2 cut(s) 588, 874
SchI GAGTC 2 cut(s) 73, 505
SduI GDGCHC 2 cut(s) 272, 483
SfaNI GCATC 1 cut(s) 186
SfuI TTCGAA 1 cut(s) 486
SinI GGWCC 2 cut(s) 588, 874
SmiMI CAYNNNNRTG 1 cut(s) 129
SsiI CCGC 3 cut(s) 7, 25, 69
SspI AATATT 1 cut(s) 640
SspMI CTAG 2 cut(s) 447, 936
TaaI ACNGT 2 cut(s) 469, 787
TaqI TCGA 4 cut(s) 62, 486, 607, 670
TatI WGTACW 1 cut(s) 792
TauI GCSGC 1 cut(s) 10
Tru1I TTAA 4 cut(s) 86, 455, 582, 666
Tru9I TTAA 4 cut(s) 86, 455, 582, 666
TscAI CASTG 2 cut(s) 87, 215
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 5 cut(s) 218, 461, 752, 809, 883
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 1 cut(s) 134
TspRI CASTG 2 cut(s) 87, 215
Tth111I GACNNNGTC 1 cut(s) 20
Van91I CCANNNNNTGG 1 cut(s) 391
VpaK11BI GGWCC 2 cut(s) 588, 874
VspI ATTAAT 1 cut(s) 666
XapI RAATTY 2 cut(s) 438, 565
XceI RCATGY 1 cut(s) 702
XcmI CCANNNNNNNNNTGG 1 cut(s) 392
XspI CTAG 2 cut(s) 447, 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.