Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008228

Physical Location & Seq

Genomic Coordinates Reverse (-)

11432873 .. 11442009

Gene Structure 9137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g13890.33

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3300 bp

ATGGCCGCGTCACGTGGTTCGTCGTCTTCCACGAACGGGTTGTTGCCGACATCGTTGTCGGAGCGGAACCACCACGACATGGAGGCCGGGGGAGGGGGAGGAGGGGAAAGGGTGGGATTGGAGACCGAGTTCGACGACGACGACGCTGCCGCGCCGACCGATCCCTTCGACATTGCCCACACCAAGAACGCGCCTCCCGCGACGCTCAGGAGATGGAGGCAAGCGGCACTAGTGTTAAATGCTTCCAGGCGGTTCAGGTACACTATGGACTTGAAAGCGGAAGAAGAAAAAGAAAATAGCAGGCGGATGATTAGATCCCATGCACAAGTCATAAGAGCAGCATTGCTTTTCAGATTGGCAGGAGAACGGGAACTTGGGATTGGCACAACAGTTGCGCCCCCAACTCCCAGTGGTGATTATGGAATTGCACTAGATGAACTTGTTACATTGACCAGGGAGAACAACGTTACCGCTTTACAGCAATATGGAGGGGTTAAAGGCATATCAGCGTTGCTAAAATCGAATGCGGAGAAGGGAATTGATGGGGTTGAAACAGATGTAGTAAAACGAAAGGAAGTGTTTGGATCGAATACGTATCCTCGGAAAAAAGGGCGGAGTTTCTTGAGGTTCCTTTGGGAAGCTTGGCAAGACTTAACTCTTATAATCTTGATCATAGCTGCAGTGGTGTCATTGGGACTCGGAATAAAAACTGAGGGTCTGGAGGAAGGATGGTATGATGGAGGAAGCATTTTCTTTGCTGTGTTTCTTGTTATAATTGTTACAGCTGTTAGTGATTATCGGCAATCTCTTCAGTTCCAAAATCTTAACTCGGAAAAGCAAAATATACAACTGGAGGTACTGAGAGGCGGTAGATCAGTAAAGATCTCAATATTTGATATTGTGGTTGGTGATGTTGTACCACTCAGAATAGGTGATCAAGTCCCTGCTGATGGAATCTTAATCACTGGTCATTCACTTGCTATCGATGAATCTAGCATGACTGGTGAAAGCAAGATTGTTCACAAGGATCAGAAAGCACCTTTCTTAATGTCAGGTTGCAAAGTGGCTGATGGAGTGGGTACTATGCTGGTAACTGGTGTTGGGATCAATACTGAATGGGGATTGTTGATGGCAAGCATCTCAGAGGATACTGGTGAAGAAACTCCTTTACAGGTGCGTTTGAATGGAGTTGCAACTTTTATAGGCATAGTTGGGCTTTCAGTAGCTGTTTTGGTGCTTGCCGTCCTTTGGGGCAGATACTTTACTGGAAATACAAGAGATCTAGATGGAAAAGTCCAGTTTATAGCTGGTCAGACTAGAATTGGCAAAGCTTTTGATGGAGCAGTAAAAATTTTCACAATTGCTGTAACCATTGTGGTTGTTGCAGTCCCTGAGGGGCTACCTTTGGCCGTTACCTTGACGCTAGCATACTCAATGAAGAAAATGATGGCAGATAAGGCATTGGTGCGTAGACTGTCAGCCTGTGAAACTATGGGGTCAGCAACAACGATTTGCAGTGATAAAACTGGGACATTGACTTTAAATCAGATGACTGTGGTTGAGGCATATGTTGGGAGAAAGAAGATAAATCCACCAGATGATTCCTCACAGCTGCATCCACTGGTTTCCACTCTGTTAAGTGAGGGTGTTGCGCAGAATACCACTGGCAATGTATTTGAGCCAACGGGTGGTGAAGTAGAGATTTCTGGATCTCCTACGGAAAAGGCTATACTTTCTTGGGCATTCAAGTTGGGGATGAAGTTTGGTATTATCAGATCGGAGTCTACAGTCCTTCATGTCTTCCCTTTCAACTCAGAGAAAAAGCGAGGTGGTGTTGCAGTAAAGCAGGCTGACTCTAAAGTTCATATACATTGGAAAGGAGCAGCGGAGATACTTTTAGCCTCGTGCACAGAGTACCTTGACTCAGATGGTTGCTCGCATAATATTAAAGATGACAAGGAATTTTTCGTGACAGCTATTAATGACATGGCAGAGAGCAGTTTGCGGTGTGTTGCCGTTGCATATAGACCATATGGATTGGATAAAATTCCTACCGATGAAGAGCAATTAAGTCAATGGGCATTACCAGAAGATAACCTTGTCCTGCTTGCTATTGTTGGTATAAAGGATCCTTGTCGTCCTGGTGTCAGAGATGCAGTGAAACAATGCACAGAAGCTGGTGTCAAGGTACGCATGGTCACTGGAGACAATCTTCAAACAGCAAAAGCCATCGCGTTAGAGTGTGGAATACTACTTTCACTTGAAGATGCTACTGAACCTACTATCATTGAAGGAAAAGTGTTCCGTGAATTGTCTGAAAGGGAAAGGGAACAACTTGCCAAGAAAATAACAGTAATGGGCAGATCTTCTCCCAATGACAAGTTGTTGCTTGTGCAAGCATTGCGTAAGGGGGGTGAAGTTGTTGCAGTAACAGGGGATGGCACTAATGATGCTCCGGCACTTCATGAGGCAGATATTGGTCTTTCTATGGGCATTCAAGGAACTGAAGTTGCTAAGGAAAGTTCGGATATTGTTATCTTGGATGATAATTTTGCGTCTGTTGTAAAGGTTGTTCGCTGGGGACGTTCTGTGTATGCAAATATTCAGAAATTTATCCAATTCCAACTTACTGTTAATGTTGCTGCTCTTGTAATTAATGTTGTGGCCGCAATCTCTTCTGGTCGTGTTCCTTTAAATGCAGTACAGCTTCTCTGGGTTAACTTGATCATGGATACTCTAGGAGCACTTGCGTTGGCTACCGAACCACCTACAGACAACCTTATGCATAGAACACCAGTTGGCCGAAGGGCACCTCTTATAACGAACATCATGTGGAGGAACCTACTCATTCAGGCAATGTATCAAGTTACCGTCCTCCTTGTCCTCAACTTTTTGGGAAATAGCATTCTTGGTCTGCAGCAGGATGTCCCAAAGCATGCCGTTGGTGTGAAGAATACTGTCATATTCAATGCATTCGTCTTTTGTCAAATTTTCAACGAGTTCAATGCTCGAAAGCCTGAAGAAATAAATGTCTTCACTGGAGTGACCAAAAACTACCTCTTCATGGGAATAATAGGAATTACATTTGTACTTCAGATAATCATCGTCATGTTCCTCGGAAAATTTACAAAAACGGTTAGACTATCATGGCAGCAATGGCTCATATGCTTGGGAATTGCCATTGTCAGTTGGCCTCTTGCTATTATTGGAAAACTAATTCCGGTCCCAAGGACTCCGTTCTCCCAGTACTTCAGCCGGCCTATTAAGCGGTGCAGAAATTCTCGTAATCGTAATACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007275 GO:0007338 GO:0008150 GO:0008324 GO:0009555 GO:0009566 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0019953 GO:0022414 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044703 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0051704 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

1100

Amino Acids

119.6

Weight (kDa)

7.21

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21180
fragaria_vesca	FvH4_6g37190 FvH4_6g37190 FvH4_6g37190 FvH4_6g37190
malus_domestica	MD09G1160300.v1.1 MD17G1146100.v1.1
prunus_persica	Prupe.3G018900_v2.0.a1 Prupe.3G018900_v2.0.a1 Prupe.3G018900_v2.0.a1 Prupe.3G018900_v2.0.a1 Prupe.3G018900_v2.0.a1
pyrus_communis	pycom09g07890 pycom17g13890
rosa_chinensis	RchiOBHm_Chr2g0149841
rosa_laevigata	RLG00000020450
rosa_multiflora	Rmu_ssc0000308.1_g000029
rosa_roxburghii	Rroxscaffold_2G00097600
rosa_rugosa	Rorug02G0417000
rosa_samantha	Rh2BG487700 Rh2CG461600 Rh2DG496500
rosa_wichuraiana	Rw2G038820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	662, 773, 2819
AasI	GACNNNNNNGTC	1 cut(s)	55
Acc16I	TGCGCA	1 cut(s)	1653
AccB1I	GGYRCC	1 cut(s)	2809
AccB7I	CCANNNNNTGG	2 cut(s)	79, 1688
AccBSI	CCGCTC	1 cut(s)	64
AccI	GTMKAC	2 cut(s)	1471, 1784
AccII	CGCG	5 cut(s)	8, 152, 191, 200, 2234
AclI	AACGTT	1 cut(s)	465
AclWI	GGATC	8 cut(s)	155, 309, 592, 1035, 1112, 1717, 2123, 2136
AcoI	YGGCCR	4 cut(s)	3, 1407, 2664, 2800
AcsI	RAATTY	7 cut(s)	1350, 1961, 2046, 2609, 2988, 3122, 3277
AcuI	CTGAAG	5 cut(s)	794, 2526, 3039, 3077, 3235
AcvI	CACGTG	1 cut(s)	14
AfaI	GTAC	9 cut(s)	260, 858, 918, 1081, 1916, 2190, 2703, 3090, 3248
AfiI	CCNNNNNNNGG	7 cut(s)	36, 79, 93, 950, 1248, 1688, 3064
AhlI	ACTAGT	1 cut(s)	229
AjnI	CCWGG	3 cut(s)	245, 452, 2140
AjuI	GAANNNNNNNTTGG	4 cut(s)	357, 363, 389, 395
AleI	CACNNNNGTG	1 cut(s)	3041
AloI	GAACNNNNNNTCC	2 cut(s)	113, 145
Alw21I	GWGCWC	2 cut(s)	1910, 2746
Alw26I	GTCTC	2 cut(s)	116, 2199
Alw44I	GTGCAC	1 cut(s)	1906
AlwI	GGATC	8 cut(s)	155, 309, 592, 1035, 1112, 1717, 2123, 2136
AlwNI	CAGNNNCTG	3 cut(s)	1226, 1391, 2177
AoxI	GGCC	7 cut(s)	3, 84, 1407, 2664, 2800, 3191, 3257
ApaLI	GTGCAC	1 cut(s)	1906
ApeKI	GCWGC	8 cut(s)	146, 338, 677, 1612, 1883, 2642, 2917, 3151
ApoI	RAATTY	7 cut(s)	1350, 1961, 2046, 2609, 2988, 3122, 3277
AseI	ATTAAT	2 cut(s)	1980, 2655
AspLEI	GCGC	4 cut(s)	154, 193, 397, 1654
AspS9I	GGNCC	1 cut(s)	3223
AsuC2I	CCSGG	1 cut(s)	88
AsuHPI	GGTGA	7 cut(s)	425, 920, 944, 1016, 1166, 1703, 2426
AsuNHI	GCTAGC	1 cut(s)	1423
AvaII	GGWCC	1 cut(s)	3223
AxyI	CCTNAGG	1 cut(s)	1392
BaeGI	GKGCMC	2 cut(s)	1910, 2812
BamHI	GGATCC	1 cut(s)	2128
BanI	GGYRCC	1 cut(s)	2809
BauI	CACGAG	1 cut(s)	1903
BbrPI	CACGTG	1 cut(s)	14
BbsI	GAAGAC	3 cut(s)	18, 1792, 3025
Bbv12I	GWGCWC	2 cut(s)	1910, 2746
BbvI	GCAGC	8 cut(s)	133, 350, 664, 1599, 1895, 2629, 2929, 3163
BceAI	ACGGC	4 cut(s)	1226, 1394, 2000, 2924
BcgI	CGANNNNNNTGC	4 cut(s)	128, 162, 2987, 3021
BciT130I	CCWGG	3 cut(s)	247, 454, 2142
BciVI	GTATCC	3 cut(s)	606, 1141, 2725
BclI	TGATCA	3 cut(s)	669, 934, 2724
BcnI	CCSGG	1 cut(s)	88
BcoDI	GTCTC	2 cut(s)	116, 2199
BcuI	ACTAGT	1 cut(s)	229
BfaI	CTAG	7 cut(s)	230, 431, 993, 1283, 1317, 1424, 2738
BfmI	CTRYAG	4 cut(s)	678, 1785, 2769, 2915
BfuI	GTATCC	3 cut(s)	606, 1141, 2725
BglII	AGATCT	3 cut(s)	882, 1279, 2363
BmcAI	AGTACT	1 cut(s)	3248
Bme1390I	CCNGG	4 cut(s)	88, 247, 454, 2142
Bme18I	GGWCC	1 cut(s)	3223
BmgT120I	GGNCC	1 cut(s)	3223
BmiI	GGNNCC	6 cut(s)	68, 629, 2130, 2811, 2840, 3225
BmrFI	CCNGG	4 cut(s)	88, 247, 454, 2142
BmrI	ACTGGG	3 cut(s)	402, 1536, 3238
BmsI	GCATC	5 cut(s)	1146, 1624, 2143, 2257, 2440
BmtI	GCTAGC	1 cut(s)	1427
BmuI	ACTGGG	3 cut(s)	402, 1536, 3238
BpiI	GAAGAC	3 cut(s)	18, 1792, 3025
BpmI	CTGGAG	4 cut(s)	740, 872, 2223, 3060
Bpu10I	CCTNAGC	2 cut(s)	206, 2514
BpuEI	CTTGAG	1 cut(s)	643
BpuMI	CCSGG	1 cut(s)	88
Bsa29I	ATCGAT	1 cut(s)	984
BsaAI	YACGTR	2 cut(s)	14, 594
BsaBI	GATNNNNATC	1 cut(s)	3101
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	5 cut(s)	87, 453, 599, 3115, 3227
BsaWI	WCCGGW	1 cut(s)	3220
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	7 cut(s)	36, 79, 93, 950, 1248, 1688, 3064
Bse118I	RCCGGY	1 cut(s)	3255
Bse21I	CCTNAGG	1 cut(s)	1392
Bse3DI	GCAATG	6 cut(s)	171, 341, 1675, 2399, 2862, 3161
Bse8I	GATNNNNATC	1 cut(s)	3101
BseBI	CCWGG	3 cut(s)	247, 454, 2142
BseCI	ATCGAT	1 cut(s)	984
BseDI	CCNNGG	5 cut(s)	87, 453, 599, 3115, 3227
BseGI	GGATG	7 cut(s)	312, 734, 1615, 1761, 2443, 2548, 2929
BseJI	GATNNNNATC	1 cut(s)	3101
BseLI	CCNNNNNNNGG	7 cut(s)	36, 79, 93, 950, 1248, 1688, 3064
BseMI	GCAATG	6 cut(s)	171, 341, 1675, 2399, 2862, 3161
BseMII	CTCAG	8 cut(s)	220, 702, 851, 937, 1155, 1383, 1827, 1938
BseRI	GAGGAG	1 cut(s)	114
BseSI	GKGCMC	2 cut(s)	1910, 2812
BseXI	GCAGC	8 cut(s)	133, 350, 664, 1599, 1895, 2629, 2929, 3163
BseYI	CCCAGC	1 cut(s)	2577
BsgI	GTGCAG	1 cut(s)	3292
Bsh1236I	CGCG	5 cut(s)	8, 152, 191, 200, 2234
Bsh1285I	CGRYCG	1 cut(s)	159
BshFI	GGCC	7 cut(s)	5, 86, 1409, 2666, 2802, 3193, 3259
BshNI	GGYRCC	1 cut(s)	2809
BshVI	ATCGAT	1 cut(s)	984
BsiEI	CGRYCG	1 cut(s)	159
BsiHKAI	GWGCWC	2 cut(s)	1910, 2746
BsiSI	CCGG	4 cut(s)	87, 2456, 3221, 3256
BslFI	GGGAC	7 cut(s)	708, 926, 1373, 1543, 2595, 2912, 3209
BslI	CCNNNNNNNGG	7 cut(s)	36, 79, 93, 950, 1248, 1688, 3064
BsmAI	GTCTC	2 cut(s)	116, 2199
BsmFI	GGGAC	7 cut(s)	708, 926, 1373, 1543, 2595, 2912, 3209
BsmI	GAATGC	5 cut(s)	529, 1742, 2493, 2904, 2972
BsnI	GGCC	7 cut(s)	5, 86, 1409, 2666, 2802, 3193, 3259
Bso31I	GGTCTC	1 cut(s)	116
Bsp1286I	GDGCHC	3 cut(s)	1910, 2746, 2812
BspANI	GGCC	7 cut(s)	5, 86, 1409, 2666, 2802, 3193, 3259
BspCNI	CTCAG	8 cut(s)	219, 703, 852, 936, 1154, 1384, 1826, 1937
BspDI	ATCGAT	1 cut(s)	984
BspFNI	CGCG	5 cut(s)	8, 152, 191, 200, 2234
BspHI	TCATGA	1 cut(s)	2464
BspLI	GGNNCC	6 cut(s)	68, 629, 2130, 2811, 2840, 3225
BspMAI	CTGCAG	2 cut(s)	682, 2919
BspOI	GCTAGC	1 cut(s)	1427
BspPI	GGATC	8 cut(s)	155, 309, 592, 1035, 1112, 1717, 2123, 2136
BspQI	GCTCTTC	1 cut(s)	2055
BspT107I	GGYRCC	1 cut(s)	2809
BspTNI	GGTCTC	1 cut(s)	116
BsrBI	CCGCTC	1 cut(s)	64
BsrDI	GCAATG	6 cut(s)	171, 341, 1675, 2399, 2862, 3161
BsrFI	RCCGGY	1 cut(s)	3255
BssAI	RCCGGY	1 cut(s)	3255
BssECI	CCNNGG	5 cut(s)	87, 453, 599, 3115, 3227
BssSI	CACGAG	1 cut(s)	1903
BssT1I	CCWWGG	1 cut(s)	3227
Bst2BI	CACGAG	1 cut(s)	1903
Bst2UI	CCWGG	3 cut(s)	247, 454, 2142
Bst4CI	ACNGT	9 cut(s)	391, 1476, 1555, 1789, 2353, 2632, 2872, 2959, 3136
Bst6I	CTCTTC	4 cut(s)	813, 2055, 2680, 3065
BstAPI	GCANNNNNTGC	1 cut(s)	2401
BstBAI	YACGTR	2 cut(s)	14, 594
BstDEI	CTNAG	9 cut(s)	206, 711, 860, 923, 1141, 1392, 1813, 1924, 2514
BstF5I	GGATG	7 cut(s)	312, 734, 1615, 1761, 2443, 2548, 2929
BstFNI	CGCG	5 cut(s)	8, 152, 191, 200, 2234
BstHHI	GCGC	4 cut(s)	154, 193, 397, 1654
BstMAI	GTCTC	2 cut(s)	116, 2199
BstMCI	CGRYCG	1 cut(s)	159
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 1457, 2401, 3157, 3265
BstNI	CCWGG	3 cut(s)	247, 454, 2142
BstNSI	RCATGY	1 cut(s)	2939
BstSCI	CCNGG	4 cut(s)	86, 245, 452, 2140
BstSFI	CTRYAG	4 cut(s)	678, 1785, 2769, 2915
BstSLI	GKGCMC	2 cut(s)	1910, 2812
BstSNI	TACGTA	1 cut(s)	594
BstUI	CGCG	5 cut(s)	8, 152, 191, 200, 2234
BstV1I	GCAGC	8 cut(s)	133, 350, 664, 1599, 1895, 2629, 2929, 3163
BstV2I	GAAGAC	3 cut(s)	18, 1792, 3025
BstX2I	RGATCY	6 cut(s)	314, 882, 1279, 1709, 2128, 2363
BstYI	RGATCY	6 cut(s)	314, 882, 1279, 1709, 2128, 2363
Bsu15I	ATCGAT	1 cut(s)	984
Bsu36I	CCTNAGG	1 cut(s)	1392
BsuI	GTATCC	3 cut(s)	606, 1141, 2725
BsuRI	GGCC	7 cut(s)	5, 86, 1409, 2666, 2802, 3193, 3259
BsuTUI	ATCGAT	1 cut(s)	984
BtgZI	GCGATG	1 cut(s)	2215
BtsCI	GGATG	7 cut(s)	312, 734, 1615, 1761, 2443, 2548, 2929
BtsI	GCAGTG	3 cut(s)	687, 1522, 2163
BtsIMutI	CAGTG	9 cut(s)	415, 687, 963, 1522, 1619, 1662, 2163, 2199, 3036
CaiI	CAGNNNCTG	3 cut(s)	1226, 1391, 2177
CciI	TCATGA	1 cut(s)	2464
CfoI	GCGC	4 cut(s)	154, 193, 397, 1654
Cfr10I	RCCGGY	1 cut(s)	3255
Cfr13I	GGNCC	1 cut(s)	3223
ClaI	ATCGAT	1 cut(s)	984
CseI	GACGC	4 cut(s)	152, 211, 1429, 2544
Csp6I	GTAC	9 cut(s)	259, 857, 917, 1080, 1915, 2189, 2702, 3089, 3247
CviQI	GTAC	9 cut(s)	259, 857, 917, 1080, 1915, 2189, 2702, 3089, 3247
DdeI	CTNAG	9 cut(s)	206, 711, 860, 923, 1141, 1392, 1813, 1924, 2514
DraI	TTTAAA	2 cut(s)	1542, 2694
DrdI	GACNNNNNNGTC	1 cut(s)	55
DseDI	GACNNNNNNGTC	1 cut(s)	55
EaeI	YGGCCR	4 cut(s)	3, 1407, 2664, 2800
Eam1104I	CTCTTC	4 cut(s)	813, 2055, 2680, 3065
EarI	CTCTTC	4 cut(s)	813, 2055, 2680, 3065
EciI	GGCGGA	2 cut(s)	319, 628
Eco105I	TACGTA	1 cut(s)	594
Eco130I	CCWWGG	1 cut(s)	3227
Eco31I	GGTCTC	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	3223
Eco57I	CTGAAG	5 cut(s)	794, 2526, 3039, 3077, 3235
Eco72I	CACGTG	1 cut(s)	14
Eco81I	CCTNAGG	1 cut(s)	1392
EcoRII	CCWGG	3 cut(s)	245, 452, 2140
EcoT14I	CCWWGG	1 cut(s)	3227
EcoT22I	ATGCAT	2 cut(s)	2787, 2974
ErhI	CCWWGG	1 cut(s)	3227
FalI	AAGNNNNNCTT	2 cut(s)	2082, 2114
FaqI	GGGAC	7 cut(s)	708, 926, 1373, 1543, 2595, 2912, 3209
FauI	CCCGC	1 cut(s)	205
FauNDI	CATATG	3 cut(s)	1567, 2032, 3164
FbaI	TGATCA	3 cut(s)	669, 934, 2724
FblI	GTMKAC	2 cut(s)	1471, 1784
FokI	GGATG	7 cut(s)	319, 741, 1602, 1768, 2450, 2555, 2936
FspBI	CTAG	7 cut(s)	230, 431, 993, 1283, 1317, 1424, 2738
FspI	TGCGCA	1 cut(s)	1653
GlaI	GCGC	4 cut(s)	153, 192, 396, 1653
GsaI	CCCAGC	1 cut(s)	2581
GsuI	CTGGAG	4 cut(s)	740, 872, 2223, 3060
HaeIII	GGCC	7 cut(s)	5, 86, 1409, 2666, 2802, 3193, 3259
HapII	CCGG	4 cut(s)	87, 2456, 3221, 3256
HgaI	GACGC	4 cut(s)	152, 211, 1429, 2544
HhaI	GCGC	4 cut(s)	154, 193, 397, 1654
Hin6I	GCGC	4 cut(s)	152, 191, 395, 1652
HinP1I	GCGC	4 cut(s)	152, 191, 395, 1652
HincII	GTYRAC	1 cut(s)	2719
HindII	GTYRAC	1 cut(s)	2719
HindIII	AAGCTT	2 cut(s)	639, 1329
HinfI	GANTC	8 cut(s)	696, 954, 989, 1601, 1781, 1853, 1922, 3232
HpaI	GTTAAC	1 cut(s)	2719
HpaII	CCGG	4 cut(s)	87, 2456, 3221, 3256
HphI	GGTGA	7 cut(s)	425, 920, 944, 1016, 1166, 1703, 2426
Hpy166II	GTNNAC	6 cut(s)	261, 1021, 1472, 1785, 1908, 2719
Hpy188III	TCNNGA	8 cut(s)	208, 622, 667, 719, 1283, 1707, 1969, 2465
Hpy8I	GTNNAC	6 cut(s)	261, 1021, 1472, 1785, 1908, 2719
Hpy99I	CGWCG	6 cut(s)	25, 137, 140, 143, 146, 205
HpyAV	CCTTC	6 cut(s)	175, 526, 719, 1802, 2285, 2799
HpyCH4III	ACNGT	9 cut(s)	391, 1476, 1555, 1789, 2353, 2632, 2872, 2959, 3136
HpyCH4IV	ACGT	4 cut(s)	13, 465, 593, 2584
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 1457, 2401, 3157, 3265
HpyF3I	CTNAG	9 cut(s)	206, 711, 860, 923, 1141, 1392, 1813, 1924, 2514
HpySE526I	ACGT	4 cut(s)	13, 465, 593, 2584
HspAI	GCGC	4 cut(s)	152, 191, 395, 1652
KroI	GCCGGC	1 cut(s)	3255
KroNI	GCCGGC	1 cut(s)	3257
Ksp22I	TGATCA	3 cut(s)	669, 934, 2724
KspAI	GTTAAC	1 cut(s)	2719
LguI	GCTCTTC	1 cut(s)	2055
LmnI	GCTCC	5 cut(s)	61, 1340, 1880, 2458, 2741
Lsp1109I	GCAGC	8 cut(s)	133, 350, 664, 1599, 1895, 2629, 2929, 3163
LweI	GCATC	5 cut(s)	1146, 1624, 2143, 2257, 2440
MaeI	CTAG	7 cut(s)	230, 431, 993, 1283, 1317, 1424, 2738
MaeII	ACGT	4 cut(s)	13, 465, 593, 2584
MbiI	CCGCTC	1 cut(s)	64
MfeI	CAATTG	1 cut(s)	1359
MflI	RGATCY	6 cut(s)	314, 882, 1279, 1709, 2128, 2363
MhlI	GDGCHC	3 cut(s)	1910, 2746, 2812
MlyI	GAGTC	5 cut(s)	690, 1790, 1847, 1916, 3226
MmeI	TCCRAC	2 cut(s)	39, 2647
Mph1103I	ATGCAT	2 cut(s)	2787, 2974
MroNI	GCCGGC	1 cut(s)	3255
MslI	CAYNNNNRTG	2 cut(s)	3041, 3107
MspA1I	CMGCKG	3 cut(s)	785, 1612, 1886
MspI	CCGG	4 cut(s)	87, 2456, 3221, 3256
MspR9I	CCNGG	4 cut(s)	88, 247, 454, 2142
MunI	CAATTG	1 cut(s)	1359
Mva1269I	GAATGC	5 cut(s)	529, 1742, 2493, 2904, 2972
MvaI	CCWGG	3 cut(s)	247, 454, 2142
MvnI	CGCG	5 cut(s)	8, 152, 191, 200, 2234
MwoI	GCNNNNNNNGC	5 cut(s)	197, 1457, 2401, 3157, 3265
NaeI	GCCGGC	1 cut(s)	3257
NciI	CCSGG	1 cut(s)	88
NdeI	CATATG	3 cut(s)	1567, 2032, 3164
NgoMIV	GCCGGC	1 cut(s)	3255
NheI	GCTAGC	1 cut(s)	1423
NlaIV	GGNNCC	6 cut(s)	68, 629, 2130, 2811, 2840, 3225
NmuCI	GTSAC	4 cut(s)	9, 1969, 2197, 3043
NsbI	TGCGCA	1 cut(s)	1653
NsiI	ATGCAT	2 cut(s)	2787, 2974
NspI	RCATGY	1 cut(s)	2939
OliI	CACNNNNGTG	1 cut(s)	3041
PaeI	GCATGC	1 cut(s)	2939
PagI	TCATGA	1 cut(s)	2464
PciSI	GCTCTTC	1 cut(s)	2055
PcsI	WCGNNNNNNNCGW	3 cut(s)	29, 138, 2581
PctI	GAATGC	5 cut(s)	529, 1742, 2493, 2904, 2972
PdiI	GCCGGC	1 cut(s)	3257
PfeI	GAWTC	3 cut(s)	954, 989, 1601
PflMI	CCANNNNNTGG	2 cut(s)	79, 1688
PleI	GAGTC	5 cut(s)	690, 1789, 1847, 1916, 3226
PmaCI	CACGTG	1 cut(s)	14
PmlI	CACGTG	1 cut(s)	14
PpsI	GAGTC	5 cut(s)	690, 1789, 1847, 1916, 3226
Ppu21I	YACGTR	2 cut(s)	14, 594
PshBI	ATTAAT	2 cut(s)	1980, 2655
PsiI	TTATAA	3 cut(s)	662, 773, 2819
Psp1406I	AACGTT	1 cut(s)	465
Psp6I	CCWGG	3 cut(s)	245, 452, 2140
PspCI	CACGTG	1 cut(s)	14
PspFI	CCCAGC	1 cut(s)	2577
PspGI	CCWGG	3 cut(s)	245, 452, 2140
PspN4I	GGNNCC	6 cut(s)	68, 629, 2130, 2811, 2840, 3225
PspPI	GGNCC	1 cut(s)	3223
PsrI	GAACNNNNNNTAC	2 cut(s)	2556, 2588
PstI	CTGCAG	2 cut(s)	682, 2919
PstNI	CAGNNNCTG	3 cut(s)	1226, 1391, 2177
PsuI	RGATCY	6 cut(s)	314, 882, 1279, 1709, 2128, 2363
PvuII	CAGCTG	2 cut(s)	785, 1612
RsaI	GTAC	9 cut(s)	260, 858, 918, 1081, 1916, 2190, 2703, 3090, 3248
RsaNI	GTAC	9 cut(s)	259, 857, 917, 1080, 1915, 2189, 2702, 3089, 3247
RseI	CAYNNNNRTG	2 cut(s)	3041, 3107
SapI	GCTCTTC	1 cut(s)	2055
Sau96I	GGNCC	1 cut(s)	3223
ScaI	AGTACT	1 cut(s)	3248
SchI	GAGTC	5 cut(s)	690, 1790, 1847, 1916, 3226
ScrFI	CCNGG	4 cut(s)	88, 247, 454, 2142
SduI	GDGCHC	3 cut(s)	1910, 2746, 2812
SfaNI	GCATC	5 cut(s)	1146, 1624, 2143, 2257, 2440
SfcI	CTRYAG	4 cut(s)	678, 1785, 2769, 2915
SinI	GGWCC	1 cut(s)	3223
SmiMI	CAYNNNNRTG	2 cut(s)	3041, 3107
SmlI	CTYRAG	1 cut(s)	622
SmoI	CTYRAG	1 cut(s)	622
SnaBI	TACGTA	1 cut(s)	594
SpeI	ACTAGT	1 cut(s)	229
SphI	GCATGC	1 cut(s)	2939
SspI	AATATT	3 cut(s)	891, 1945, 2602
SspMI	CTAG	7 cut(s)	230, 431, 993, 1283, 1317, 1424, 2738
StyD4I	CCNGG	4 cut(s)	86, 245, 452, 2140
StyI	CCWWGG	1 cut(s)	3227
TaaI	ACNGT	9 cut(s)	391, 1476, 1555, 1789, 2353, 2632, 2872, 2959, 3136
TaiI	ACGT	4 cut(s)	16, 468, 596, 2587
TaqI	TCGA	6 cut(s)	132, 168, 521, 587, 984, 3010
TaqII	GACCGA	2 cut(s)	140, 173
TatI	WGTACW	3 cut(s)	2701, 3088, 3246
TauI	GCSGC	4 cut(s)	8, 152, 227, 2669
TfiI	GAWTC	3 cut(s)	954, 989, 1601
TscAI	CASTG	9 cut(s)	415, 687, 970, 1522, 1626, 1669, 2163, 2206, 3043
TseFI	GTSAC	4 cut(s)	9, 1969, 2197, 3043
TseI	GCWGC	8 cut(s)	146, 338, 677, 1612, 1883, 2642, 2917, 3151
Tsp45I	GTSAC	4 cut(s)	9, 1969, 2197, 3043
TspDTI	ATGAA	9 cut(s)	450, 1002, 1451, 1772, 1784, 1853, 2073, 2453, 3052
TspGWI	ACGGA	3 cut(s)	1733, 2294, 3225
TspRI	CASTG	9 cut(s)	415, 687, 970, 1522, 1626, 1669, 2163, 2206, 3043
Van91I	CCANNNNNTGG	2 cut(s)	79, 1688
VneI	GTGCAC	1 cut(s)	1906
VpaK11BI	GGWCC	1 cut(s)	3223
VspI	ATTAAT	2 cut(s)	1980, 2655
XapI	RAATTY	7 cut(s)	1350, 1961, 2046, 2609, 2988, 3122, 3277
XbaI	TCTAGA	1 cut(s)	1282
XceI	RCATGY	1 cut(s)	2939
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1304
XmiI	GTMKAC	2 cut(s)	1471, 1784
XspI	CTAG	7 cut(s)	230, 431, 993, 1283, 1317, 1424, 2738
ZrmI	AGTACT	1 cut(s)	3248
Zsp2I	ATGCAT	2 cut(s)	2787, 2974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.