Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008228

Physical Location & Seq

Genomic Coordinates Reverse (-)

11432873 .. 11442009

Gene Structure 9137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3300 bp

ATGGCCGCGTCACGTGGTTCGTCGTCTTCCACGAACGGGTTGTTGCCGACATCGTTGTCGGAGCGGAACCACCACGACATGGAGGCCGGGGGAGGGGGAGGAGGGGAAAGGGTGGGATTGGAGACCGAGTTCGACGACGACGACGCTGCCGCGCCGACCGATCCCTTCGACATTGCCCACACCAAGAACGCGCCTCCCGCGACGCTCAGGAGATGGAGGCAAGCGGCACTAGTGTTAAATGCTTCCAGGCGGTTCAGGTACACTATGGACTTGAAAGCGGAAGAAGAAAAAGAAAATAGCAGGCGGATGATTAGATCCCATGCACAAGTCATAAGAGCAGCATTGCTTTTCAGATTGGCAGGAGAACGGGAACTTGGGATTGGCACAACAGTTGCGCCCCCAACTCCCAGTGGTGATTATGGAATTGCACTAGATGAACTTGTTACATTGACCAGGGAGAACAACGTTACCGCTTTACAGCAATATGGAGGGGTTAAAGGCATATCAGCGTTGCTAAAATCGAATGCGGAGAAGGGAATTGATGGGGTTGAAACAGATGTAGTAAAACGAAAGGAAGTGTTTGGATCGAATACGTATCCTCGGAAAAAAGGGCGGAGTTTCTTGAGGTTCCTTTGGGAAGCTTGGCAAGACTTAACTCTTATAATCTTGATCATAGCTGCAGTGGTGTCATTGGGACTCGGAATAAAAACTGAGGGTCTGGAGGAAGGATGGTATGATGGAGGAAGCATTTTCTTTGCTGTGTTTCTTGTTATAATTGTTACAGCTGTTAGTGATTATCGGCAATCTCTTCAGTTCCAAAATCTTAACTCGGAAAAGCAAAATATACAACTGGAGGTACTGAGAGGCGGTAGATCAGTAAAGATCTCAATATTTGATATTGTGGTTGGTGATGTTGTACCACTCAGAATAGGTGATCAAGTCCCTGCTGATGGAATCTTAATCACTGGTCATTCACTTGCTATCGATGAATCTAGCATGACTGGTGAAAGCAAGATTGTTCACAAGGATCAGAAAGCACCTTTCTTAATGTCAGGTTGCAAAGTGGCTGATGGAGTGGGTACTATGCTGGTAACTGGTGTTGGGATCAATACTGAATGGGGATTGTTGATGGCAAGCATCTCAGAGGATACTGGTGAAGAAACTCCTTTACAGGTGCGTTTGAATGGAGTTGCAACTTTTATAGGCATAGTTGGGCTTTCAGTAGCTGTTTTGGTGCTTGCCGTCCTTTGGGGCAGATACTTTACTGGAAATACAAGAGATCTAGATGGAAAAGTCCAGTTTATAGCTGGTCAGACTAGAATTGGCAAAGCTTTTGATGGAGCAGTAAAAATTTTCACAATTGCTGTAACCATTGTGGTTGTTGCAGTCCCTGAGGGGCTACCTTTGGCCGTTACCTTGACGCTAGCATACTCAATGAAGAAAATGATGGCAGATAAGGCATTGGTGCGTAGACTGTCAGCCTGTGAAACTATGGGGTCAGCAACAACGATTTGCAGTGATAAAACTGGGACATTGACTTTAAATCAGATGACTGTGGTTGAGGCATATGTTGGGAGAAAGAAGATAAATCCACCAGATGATTCCTCACAGCTGCATCCACTGGTTTCCACTCTGTTAAGTGAGGGTGTTGCGCAGAATACCACTGGCAATGTATTTGAGCCAACGGGTGGTGAAGTAGAGATTTCTGGATCTCCTACGGAAAAGGCTATACTTTCTTGGGCATTCAAGTTGGGGATGAAGTTTGGTATTATCAGATCGGAGTCTACAGTCCTTCATGTCTTCCCTTTCAACTCAGAGAAAAAGCGAGGTGGTGTTGCAGTAAAGCAGGCTGACTCTAAAGTTCATATACATTGGAAAGGAGCAGCGGAGATACTTTTAGCCTCGTGCACAGAGTACCTTGACTCAGATGGTTGCTCGCATAATATTAAAGATGACAAGGAATTTTTCGTGACAGCTATTAATGACATGGCAGAGAGCAGTTTGCGGTGTGTTGCCGTTGCATATAGACCATATGGATTGGATAAAATTCCTACCGATGAAGAGCAATTAAGTCAATGGGCATTACCAGAAGATAACCTTGTCCTGCTTGCTATTGTTGGTATAAAGGATCCTTGTCGTCCTGGTGTCAGAGATGCAGTGAAACAATGCACAGAAGCTGGTGTCAAGGTACGCATGGTCACTGGAGACAATCTTCAAACAGCAAAAGCCATCGCGTTAGAGTGTGGAATACTACTTTCACTTGAAGATGCTACTGAACCTACTATCATTGAAGGAAAAGTGTTCCGTGAATTGTCTGAAAGGGAAAGGGAACAACTTGCCAAGAAAATAACAGTAATGGGCAGATCTTCTCCCAATGACAAGTTGTTGCTTGTGCAAGCATTGCGTAAGGGGGGTGAAGTTGTTGCAGTAACAGGGGATGGCACTAATGATGCTCCGGCACTTCATGAGGCAGATATTGGTCTTTCTATGGGCATTCAAGGAACTGAAGTTGCTAAGGAAAGTTCGGATATTGTTATCTTGGATGATAATTTTGCGTCTGTTGTAAAGGTTGTTCGCTGGGGACGTTCTGTGTATGCAAATATTCAGAAATTTATCCAATTCCAACTTACTGTTAATGTTGCTGCTCTTGTAATTAATGTTGTGGCCGCAATCTCTTCTGGTCGTGTTCCTTTAAATGCAGTACAGCTTCTCTGGGTTAACTTGATCATGGATACTCTAGGAGCACTTGCGTTGGCTACCGAACCACCTACAGACAACCTTATGCATAGAACACCAGTTGGCCGAAGGGCACCTCTTATAACGAACATCATGTGGAGGAACCTACTCATTCAGGCAATGTATCAAGTTACCGTCCTCCTTGTCCTCAACTTTTTGGGAAATAGCATTCTTGGTCTGCAGCAGGATGTCCCAAAGCATGCCGTTGGTGTGAAGAATACTGTCATATTCAATGCATTCGTCTTTTGTCAAATTTTCAACGAGTTCAATGCTCGAAAGCCTGAAGAAATAAATGTCTTCACTGGAGTGACCAAAAACTACCTCTTCATGGGAATAATAGGAATTACATTTGTACTTCAGATAATCATCGTCATGTTCCTCGGAAAATTTACAAAAACGGTTAGACTATCATGGCAGCAATGGCTCATATGCTTGGGAATTGCCATTGTCAGTTGGCCTCTTGCTATTATTGGAAAACTAATTCCGGTCCCAAGGACTCCGTTCTCCCAGTACTTCAGCCGGCCTATTAAGCGGTGCAGAAATTCTCGTAATCGTAATACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007275 GO:0007338 GO:0008150 GO:0008324 GO:0009555 GO:0009566 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0019953 GO:0022414 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044703 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0051704 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

1100

Amino Acids

119.6

Weight (kDa)

7.21

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CaATP_NAI	PF12515	54 - 96	4e-14	Ca2+-ATPase N terminal autoinhibitory domain
Cation_ATPase_N	PF00690	162 - 230	5.2e-15	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	283 - 379	5e-19	P-type ATPase actuator domain
Hydrolase	PF00702	503 - 825	1.2e-15	haloacid dehalogenase-like hydrolase
Cation_ATPase	PF13246	543 - 714	1.6e-28	P-type ATPase, cytoplasmic domain N
Cation_ATPase_C	PF00689	896 - 1073	3.1e-45	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21180
fragaria_vesca	FvH4_6g37190 FvH4_6g37190 FvH4_6g37190 FvH4_6g37190
malus_domestica	MD09G1160300.v1.1 MD17G1146100.v1.1
prunus_persica	Prupe.3G018900_v2.0.a1 Prupe.3G018900_v2.0.a1 Prupe.3G018900_v2.0.a1 Prupe.3G018900_v2.0.a1 Prupe.3G018900_v2.0.a1
pyrus_communis	pycom09g07890 pycom17g13890
rosa_chinensis	RchiOBHm_Chr2g0149841
rosa_laevigata	RLG00000020450
rosa_multiflora	Rmu_ssc0000308.1_g000029
rosa_roxburghii	Rroxscaffold_2G00097600
rosa_rugosa	Rorug02G0417000
rosa_samantha	Rh2BG487700 Rh2CG461600 Rh2DG496500
rosa_wichuraiana	Rw2G038820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	662, 773, 2819
AasI	GACNNNNNNGTC	1 cut(s)	55
Acc16I	TGCGCA	1 cut(s)	1653
AccB1I	GGYRCC	1 cut(s)	2809
AccB7I	CCANNNNNTGG	2 cut(s)	79, 1688
AccBSI	CCGCTC	1 cut(s)	64
AccI	GTMKAC	2 cut(s)	1471, 1784
AccII	CGCG	5 cut(s)	8, 152, 191, 200, 2234
AclI	AACGTT	1 cut(s)	465
AclWI	GGATC	8 cut(s)	155, 309, 592, 1035, 1112, 1717, 2123, 2136
AcoI	YGGCCR	4 cut(s)	3, 1407, 2664, 2800
AcsI	RAATTY	7 cut(s)	1350, 1961, 2046, 2609, 2988, 3122, 3277
AcuI	CTGAAG	5 cut(s)	794, 2526, 3039, 3077, 3235
AcvI	CACGTG	1 cut(s)	14
AfaI	GTAC	9 cut(s)	260, 858, 918, 1081, 1916, 2190, 2703, 3090, 3248
AfiI	CCNNNNNNNGG	7 cut(s)	36, 79, 93, 950, 1248, 1688, 3064
AhlI	ACTAGT	1 cut(s)	229
AjnI	CCWGG	3 cut(s)	245, 452, 2140
AjuI	GAANNNNNNNTTGG	4 cut(s)	357, 363, 389, 395
AleI	CACNNNNGTG	1 cut(s)	3041
AloI	GAACNNNNNNTCC	2 cut(s)	113, 145
Alw21I	GWGCWC	2 cut(s)	1910, 2746
Alw26I	GTCTC	2 cut(s)	116, 2199
Alw44I	GTGCAC	1 cut(s)	1906
AlwI	GGATC	8 cut(s)	155, 309, 592, 1035, 1112, 1717, 2123, 2136
AlwNI	CAGNNNCTG	3 cut(s)	1226, 1391, 2177
AoxI	GGCC	7 cut(s)	3, 84, 1407, 2664, 2800, 3191, 3257
ApaLI	GTGCAC	1 cut(s)	1906
ApeKI	GCWGC	8 cut(s)	146, 338, 677, 1612, 1883, 2642, 2917, 3151
ApoI	RAATTY	7 cut(s)	1350, 1961, 2046, 2609, 2988, 3122, 3277
AseI	ATTAAT	2 cut(s)	1980, 2655
AspLEI	GCGC	4 cut(s)	154, 193, 397, 1654
AspS9I	GGNCC	1 cut(s)	3223
AsuC2I	CCSGG	1 cut(s)	88
AsuHPI	GGTGA	7 cut(s)	425, 920, 944, 1016, 1166, 1703, 2426
AsuNHI	GCTAGC	1 cut(s)	1423
AvaII	GGWCC	1 cut(s)	3223
AxyI	CCTNAGG	1 cut(s)	1392
BaeGI	GKGCMC	2 cut(s)	1910, 2812
BamHI	GGATCC	1 cut(s)	2128
BanI	GGYRCC	1 cut(s)	2809
BauI	CACGAG	1 cut(s)	1903
BbrPI	CACGTG	1 cut(s)	14
BbsI	GAAGAC	3 cut(s)	18, 1792, 3025
Bbv12I	GWGCWC	2 cut(s)	1910, 2746
BbvI	GCAGC	8 cut(s)	133, 350, 664, 1599, 1895, 2629, 2929, 3163
BceAI	ACGGC	4 cut(s)	1226, 1394, 2000, 2924
BcgI	CGANNNNNNTGC	4 cut(s)	128, 162, 2987, 3021
BciT130I	CCWGG	3 cut(s)	247, 454, 2142
BciVI	GTATCC	3 cut(s)	606, 1141, 2725
BclI	TGATCA	3 cut(s)	669, 934, 2724
BcnI	CCSGG	1 cut(s)	88
BcoDI	GTCTC	2 cut(s)	116, 2199
BcuI	ACTAGT	1 cut(s)	229
BfaI	CTAG	7 cut(s)	230, 431, 993, 1283, 1317, 1424, 2738
BfmI	CTRYAG	4 cut(s)	678, 1785, 2769, 2915
BfuI	GTATCC	3 cut(s)	606, 1141, 2725
BglII	AGATCT	3 cut(s)	882, 1279, 2363
BmcAI	AGTACT	1 cut(s)	3248
Bme1390I	CCNGG	4 cut(s)	88, 247, 454, 2142
Bme18I	GGWCC	1 cut(s)	3223
BmgT120I	GGNCC	1 cut(s)	3223
BmiI	GGNNCC	6 cut(s)	68, 629, 2130, 2811, 2840, 3225
BmrFI	CCNGG	4 cut(s)	88, 247, 454, 2142
BmrI	ACTGGG	3 cut(s)	402, 1536, 3238
BmsI	GCATC	5 cut(s)	1146, 1624, 2143, 2257, 2440
BmtI	GCTAGC	1 cut(s)	1427
BmuI	ACTGGG	3 cut(s)	402, 1536, 3238
BpiI	GAAGAC	3 cut(s)	18, 1792, 3025
BpmI	CTGGAG	4 cut(s)	740, 872, 2223, 3060
Bpu10I	CCTNAGC	2 cut(s)	206, 2514
BpuEI	CTTGAG	1 cut(s)	643
BpuMI	CCSGG	1 cut(s)	88
Bsa29I	ATCGAT	1 cut(s)	984
BsaAI	YACGTR	2 cut(s)	14, 594
BsaBI	GATNNNNATC	1 cut(s)	3101
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	5 cut(s)	87, 453, 599, 3115, 3227
BsaWI	WCCGGW	1 cut(s)	3220
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	7 cut(s)	36, 79, 93, 950, 1248, 1688, 3064
Bse118I	RCCGGY	1 cut(s)	3255
Bse21I	CCTNAGG	1 cut(s)	1392
Bse3DI	GCAATG	6 cut(s)	171, 341, 1675, 2399, 2862, 3161
Bse8I	GATNNNNATC	1 cut(s)	3101
BseBI	CCWGG	3 cut(s)	247, 454, 2142
BseCI	ATCGAT	1 cut(s)	984
BseDI	CCNNGG	5 cut(s)	87, 453, 599, 3115, 3227
BseGI	GGATG	7 cut(s)	312, 734, 1615, 1761, 2443, 2548, 2929
BseJI	GATNNNNATC	1 cut(s)	3101
BseLI	CCNNNNNNNGG	7 cut(s)	36, 79, 93, 950, 1248, 1688, 3064
BseMI	GCAATG	6 cut(s)	171, 341, 1675, 2399, 2862, 3161
BseMII	CTCAG	8 cut(s)	220, 702, 851, 937, 1155, 1383, 1827, 1938
BseRI	GAGGAG	1 cut(s)	114
BseSI	GKGCMC	2 cut(s)	1910, 2812
BseXI	GCAGC	8 cut(s)	133, 350, 664, 1599, 1895, 2629, 2929, 3163
BseYI	CCCAGC	1 cut(s)	2577
BsgI	GTGCAG	1 cut(s)	3292
Bsh1236I	CGCG	5 cut(s)	8, 152, 191, 200, 2234
Bsh1285I	CGRYCG	1 cut(s)	159
BshFI	GGCC	7 cut(s)	5, 86, 1409, 2666, 2802, 3193, 3259
BshNI	GGYRCC	1 cut(s)	2809
BshVI	ATCGAT	1 cut(s)	984
BsiEI	CGRYCG	1 cut(s)	159
BsiHKAI	GWGCWC	2 cut(s)	1910, 2746
BsiSI	CCGG	4 cut(s)	87, 2456, 3221, 3256
BslFI	GGGAC	7 cut(s)	708, 926, 1373, 1543, 2595, 2912, 3209
BslI	CCNNNNNNNGG	7 cut(s)	36, 79, 93, 950, 1248, 1688, 3064
BsmAI	GTCTC	2 cut(s)	116, 2199
BsmFI	GGGAC	7 cut(s)	708, 926, 1373, 1543, 2595, 2912, 3209
BsmI	GAATGC	5 cut(s)	529, 1742, 2493, 2904, 2972
BsnI	GGCC	7 cut(s)	5, 86, 1409, 2666, 2802, 3193, 3259
Bso31I	GGTCTC	1 cut(s)	116
Bsp1286I	GDGCHC	3 cut(s)	1910, 2746, 2812
BspANI	GGCC	7 cut(s)	5, 86, 1409, 2666, 2802, 3193, 3259
BspCNI	CTCAG	8 cut(s)	219, 703, 852, 936, 1154, 1384, 1826, 1937
BspDI	ATCGAT	1 cut(s)	984
BspFNI	CGCG	5 cut(s)	8, 152, 191, 200, 2234
BspHI	TCATGA	1 cut(s)	2464
BspLI	GGNNCC	6 cut(s)	68, 629, 2130, 2811, 2840, 3225
BspMAI	CTGCAG	2 cut(s)	682, 2919
BspOI	GCTAGC	1 cut(s)	1427
BspPI	GGATC	8 cut(s)	155, 309, 592, 1035, 1112, 1717, 2123, 2136
BspQI	GCTCTTC	1 cut(s)	2055
BspT107I	GGYRCC	1 cut(s)	2809
BspTNI	GGTCTC	1 cut(s)	116
BsrBI	CCGCTC	1 cut(s)	64
BsrDI	GCAATG	6 cut(s)	171, 341, 1675, 2399, 2862, 3161
BsrFI	RCCGGY	1 cut(s)	3255
BssAI	RCCGGY	1 cut(s)	3255
BssECI	CCNNGG	5 cut(s)	87, 453, 599, 3115, 3227
BssSI	CACGAG	1 cut(s)	1903
BssT1I	CCWWGG	1 cut(s)	3227
Bst2BI	CACGAG	1 cut(s)	1903
Bst2UI	CCWGG	3 cut(s)	247, 454, 2142
Bst4CI	ACNGT	9 cut(s)	391, 1476, 1555, 1789, 2353, 2632, 2872, 2959, 3136
Bst6I	CTCTTC	4 cut(s)	813, 2055, 2680, 3065
BstAPI	GCANNNNNTGC	1 cut(s)	2401
BstBAI	YACGTR	2 cut(s)	14, 594
BstDEI	CTNAG	9 cut(s)	206, 711, 860, 923, 1141, 1392, 1813, 1924, 2514
BstF5I	GGATG	7 cut(s)	312, 734, 1615, 1761, 2443, 2548, 2929
BstFNI	CGCG	5 cut(s)	8, 152, 191, 200, 2234
BstHHI	GCGC	4 cut(s)	154, 193, 397, 1654
BstMAI	GTCTC	2 cut(s)	116, 2199
BstMCI	CGRYCG	1 cut(s)	159
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 1457, 2401, 3157, 3265
BstNI	CCWGG	3 cut(s)	247, 454, 2142
BstNSI	RCATGY	1 cut(s)	2939
BstSCI	CCNGG	4 cut(s)	86, 245, 452, 2140
BstSFI	CTRYAG	4 cut(s)	678, 1785, 2769, 2915
BstSLI	GKGCMC	2 cut(s)	1910, 2812
BstSNI	TACGTA	1 cut(s)	594
BstUI	CGCG	5 cut(s)	8, 152, 191, 200, 2234
BstV1I	GCAGC	8 cut(s)	133, 350, 664, 1599, 1895, 2629, 2929, 3163
BstV2I	GAAGAC	3 cut(s)	18, 1792, 3025
BstX2I	RGATCY	6 cut(s)	314, 882, 1279, 1709, 2128, 2363
BstYI	RGATCY	6 cut(s)	314, 882, 1279, 1709, 2128, 2363
Bsu15I	ATCGAT	1 cut(s)	984
Bsu36I	CCTNAGG	1 cut(s)	1392
BsuI	GTATCC	3 cut(s)	606, 1141, 2725
BsuRI	GGCC	7 cut(s)	5, 86, 1409, 2666, 2802, 3193, 3259
BsuTUI	ATCGAT	1 cut(s)	984
BtgZI	GCGATG	1 cut(s)	2215
BtsCI	GGATG	7 cut(s)	312, 734, 1615, 1761, 2443, 2548, 2929
BtsI	GCAGTG	3 cut(s)	687, 1522, 2163
BtsIMutI	CAGTG	9 cut(s)	415, 687, 963, 1522, 1619, 1662, 2163, 2199, 3036
CaiI	CAGNNNCTG	3 cut(s)	1226, 1391, 2177
CciI	TCATGA	1 cut(s)	2464
CfoI	GCGC	4 cut(s)	154, 193, 397, 1654
Cfr10I	RCCGGY	1 cut(s)	3255
Cfr13I	GGNCC	1 cut(s)	3223
ClaI	ATCGAT	1 cut(s)	984
CseI	GACGC	4 cut(s)	152, 211, 1429, 2544
Csp6I	GTAC	9 cut(s)	259, 857, 917, 1080, 1915, 2189, 2702, 3089, 3247
CviQI	GTAC	9 cut(s)	259, 857, 917, 1080, 1915, 2189, 2702, 3089, 3247
DdeI	CTNAG	9 cut(s)	206, 711, 860, 923, 1141, 1392, 1813, 1924, 2514
DraI	TTTAAA	2 cut(s)	1542, 2694
DrdI	GACNNNNNNGTC	1 cut(s)	55
DseDI	GACNNNNNNGTC	1 cut(s)	55
EaeI	YGGCCR	4 cut(s)	3, 1407, 2664, 2800
Eam1104I	CTCTTC	4 cut(s)	813, 2055, 2680, 3065
EarI	CTCTTC	4 cut(s)	813, 2055, 2680, 3065
EciI	GGCGGA	2 cut(s)	319, 628
Eco105I	TACGTA	1 cut(s)	594
Eco130I	CCWWGG	1 cut(s)	3227
Eco31I	GGTCTC	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	3223
Eco57I	CTGAAG	5 cut(s)	794, 2526, 3039, 3077, 3235
Eco72I	CACGTG	1 cut(s)	14
Eco81I	CCTNAGG	1 cut(s)	1392
EcoRII	CCWGG	3 cut(s)	245, 452, 2140
EcoT14I	CCWWGG	1 cut(s)	3227
EcoT22I	ATGCAT	2 cut(s)	2787, 2974
ErhI	CCWWGG	1 cut(s)	3227
FalI	AAGNNNNNCTT	2 cut(s)	2082, 2114
FaqI	GGGAC	7 cut(s)	708, 926, 1373, 1543, 2595, 2912, 3209
FauI	CCCGC	1 cut(s)	205
FauNDI	CATATG	3 cut(s)	1567, 2032, 3164
FbaI	TGATCA	3 cut(s)	669, 934, 2724
FblI	GTMKAC	2 cut(s)	1471, 1784
FokI	GGATG	7 cut(s)	319, 741, 1602, 1768, 2450, 2555, 2936
FspBI	CTAG	7 cut(s)	230, 431, 993, 1283, 1317, 1424, 2738
FspI	TGCGCA	1 cut(s)	1653
GlaI	GCGC	4 cut(s)	153, 192, 396, 1653
GsaI	CCCAGC	1 cut(s)	2581
GsuI	CTGGAG	4 cut(s)	740, 872, 2223, 3060
HaeIII	GGCC	7 cut(s)	5, 86, 1409, 2666, 2802, 3193, 3259
HapII	CCGG	4 cut(s)	87, 2456, 3221, 3256
HgaI	GACGC	4 cut(s)	152, 211, 1429, 2544
HhaI	GCGC	4 cut(s)	154, 193, 397, 1654
Hin6I	GCGC	4 cut(s)	152, 191, 395, 1652
HinP1I	GCGC	4 cut(s)	152, 191, 395, 1652
HincII	GTYRAC	1 cut(s)	2719
HindII	GTYRAC	1 cut(s)	2719
HindIII	AAGCTT	2 cut(s)	639, 1329
HinfI	GANTC	8 cut(s)	696, 954, 989, 1601, 1781, 1853, 1922, 3232
HpaI	GTTAAC	1 cut(s)	2719
HpaII	CCGG	4 cut(s)	87, 2456, 3221, 3256
HphI	GGTGA	7 cut(s)	425, 920, 944, 1016, 1166, 1703, 2426
Hpy166II	GTNNAC	6 cut(s)	261, 1021, 1472, 1785, 1908, 2719
Hpy188III	TCNNGA	8 cut(s)	208, 622, 667, 719, 1283, 1707, 1969, 2465
Hpy8I	GTNNAC	6 cut(s)	261, 1021, 1472, 1785, 1908, 2719
Hpy99I	CGWCG	6 cut(s)	25, 137, 140, 143, 146, 205
HpyAV	CCTTC	6 cut(s)	175, 526, 719, 1802, 2285, 2799
HpyCH4III	ACNGT	9 cut(s)	391, 1476, 1555, 1789, 2353, 2632, 2872, 2959, 3136
HpyCH4IV	ACGT	4 cut(s)	13, 465, 593, 2584
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 1457, 2401, 3157, 3265
HpyF3I	CTNAG	9 cut(s)	206, 711, 860, 923, 1141, 1392, 1813, 1924, 2514
HpySE526I	ACGT	4 cut(s)	13, 465, 593, 2584
HspAI	GCGC	4 cut(s)	152, 191, 395, 1652
KroI	GCCGGC	1 cut(s)	3255
KroNI	GCCGGC	1 cut(s)	3257
Ksp22I	TGATCA	3 cut(s)	669, 934, 2724
KspAI	GTTAAC	1 cut(s)	2719
LguI	GCTCTTC	1 cut(s)	2055
LmnI	GCTCC	5 cut(s)	61, 1340, 1880, 2458, 2741
Lsp1109I	GCAGC	8 cut(s)	133, 350, 664, 1599, 1895, 2629, 2929, 3163
LweI	GCATC	5 cut(s)	1146, 1624, 2143, 2257, 2440
MaeI	CTAG	7 cut(s)	230, 431, 993, 1283, 1317, 1424, 2738
MaeII	ACGT	4 cut(s)	13, 465, 593, 2584
MbiI	CCGCTC	1 cut(s)	64
MfeI	CAATTG	1 cut(s)	1359
MflI	RGATCY	6 cut(s)	314, 882, 1279, 1709, 2128, 2363
MhlI	GDGCHC	3 cut(s)	1910, 2746, 2812
MlyI	GAGTC	5 cut(s)	690, 1790, 1847, 1916, 3226
MmeI	TCCRAC	2 cut(s)	39, 2647
Mph1103I	ATGCAT	2 cut(s)	2787, 2974
MroNI	GCCGGC	1 cut(s)	3255
MslI	CAYNNNNRTG	2 cut(s)	3041, 3107
MspA1I	CMGCKG	3 cut(s)	785, 1612, 1886
MspI	CCGG	4 cut(s)	87, 2456, 3221, 3256
MspR9I	CCNGG	4 cut(s)	88, 247, 454, 2142
MunI	CAATTG	1 cut(s)	1359
Mva1269I	GAATGC	5 cut(s)	529, 1742, 2493, 2904, 2972
MvaI	CCWGG	3 cut(s)	247, 454, 2142
MvnI	CGCG	5 cut(s)	8, 152, 191, 200, 2234
MwoI	GCNNNNNNNGC	5 cut(s)	197, 1457, 2401, 3157, 3265
NaeI	GCCGGC	1 cut(s)	3257
NciI	CCSGG	1 cut(s)	88
NdeI	CATATG	3 cut(s)	1567, 2032, 3164
NgoMIV	GCCGGC	1 cut(s)	3255
NheI	GCTAGC	1 cut(s)	1423
NlaIV	GGNNCC	6 cut(s)	68, 629, 2130, 2811, 2840, 3225
NmuCI	GTSAC	4 cut(s)	9, 1969, 2197, 3043
NsbI	TGCGCA	1 cut(s)	1653
NsiI	ATGCAT	2 cut(s)	2787, 2974
NspI	RCATGY	1 cut(s)	2939
OliI	CACNNNNGTG	1 cut(s)	3041
PaeI	GCATGC	1 cut(s)	2939
PagI	TCATGA	1 cut(s)	2464
PciSI	GCTCTTC	1 cut(s)	2055
PcsI	WCGNNNNNNNCGW	3 cut(s)	29, 138, 2581
PctI	GAATGC	5 cut(s)	529, 1742, 2493, 2904, 2972
PdiI	GCCGGC	1 cut(s)	3257
PfeI	GAWTC	3 cut(s)	954, 989, 1601
PflMI	CCANNNNNTGG	2 cut(s)	79, 1688
PleI	GAGTC	5 cut(s)	690, 1789, 1847, 1916, 3226
PmaCI	CACGTG	1 cut(s)	14
PmlI	CACGTG	1 cut(s)	14
PpsI	GAGTC	5 cut(s)	690, 1789, 1847, 1916, 3226
Ppu21I	YACGTR	2 cut(s)	14, 594
PshBI	ATTAAT	2 cut(s)	1980, 2655
PsiI	TTATAA	3 cut(s)	662, 773, 2819
Psp1406I	AACGTT	1 cut(s)	465
Psp6I	CCWGG	3 cut(s)	245, 452, 2140
PspCI	CACGTG	1 cut(s)	14
PspFI	CCCAGC	1 cut(s)	2577
PspGI	CCWGG	3 cut(s)	245, 452, 2140
PspN4I	GGNNCC	6 cut(s)	68, 629, 2130, 2811, 2840, 3225
PspPI	GGNCC	1 cut(s)	3223
PsrI	GAACNNNNNNTAC	2 cut(s)	2556, 2588
PstI	CTGCAG	2 cut(s)	682, 2919
PstNI	CAGNNNCTG	3 cut(s)	1226, 1391, 2177
PsuI	RGATCY	6 cut(s)	314, 882, 1279, 1709, 2128, 2363
PvuII	CAGCTG	2 cut(s)	785, 1612
RsaI	GTAC	9 cut(s)	260, 858, 918, 1081, 1916, 2190, 2703, 3090, 3248
RsaNI	GTAC	9 cut(s)	259, 857, 917, 1080, 1915, 2189, 2702, 3089, 3247
RseI	CAYNNNNRTG	2 cut(s)	3041, 3107
SapI	GCTCTTC	1 cut(s)	2055
Sau96I	GGNCC	1 cut(s)	3223
ScaI	AGTACT	1 cut(s)	3248
SchI	GAGTC	5 cut(s)	690, 1790, 1847, 1916, 3226
ScrFI	CCNGG	4 cut(s)	88, 247, 454, 2142
SduI	GDGCHC	3 cut(s)	1910, 2746, 2812
SfaNI	GCATC	5 cut(s)	1146, 1624, 2143, 2257, 2440
SfcI	CTRYAG	4 cut(s)	678, 1785, 2769, 2915
SinI	GGWCC	1 cut(s)	3223
SmiMI	CAYNNNNRTG	2 cut(s)	3041, 3107
SmlI	CTYRAG	1 cut(s)	622
SmoI	CTYRAG	1 cut(s)	622
SnaBI	TACGTA	1 cut(s)	594
SpeI	ACTAGT	1 cut(s)	229
SphI	GCATGC	1 cut(s)	2939
SspI	AATATT	3 cut(s)	891, 1945, 2602
SspMI	CTAG	7 cut(s)	230, 431, 993, 1283, 1317, 1424, 2738
StyD4I	CCNGG	4 cut(s)	86, 245, 452, 2140
StyI	CCWWGG	1 cut(s)	3227
TaaI	ACNGT	9 cut(s)	391, 1476, 1555, 1789, 2353, 2632, 2872, 2959, 3136
TaiI	ACGT	4 cut(s)	16, 468, 596, 2587
TaqI	TCGA	6 cut(s)	132, 168, 521, 587, 984, 3010
TaqII	GACCGA	2 cut(s)	140, 173
TatI	WGTACW	3 cut(s)	2701, 3088, 3246
TauI	GCSGC	4 cut(s)	8, 152, 227, 2669
TfiI	GAWTC	3 cut(s)	954, 989, 1601
TscAI	CASTG	9 cut(s)	415, 687, 970, 1522, 1626, 1669, 2163, 2206, 3043
TseFI	GTSAC	4 cut(s)	9, 1969, 2197, 3043
TseI	GCWGC	8 cut(s)	146, 338, 677, 1612, 1883, 2642, 2917, 3151
Tsp45I	GTSAC	4 cut(s)	9, 1969, 2197, 3043
TspDTI	ATGAA	9 cut(s)	450, 1002, 1451, 1772, 1784, 1853, 2073, 2453, 3052
TspGWI	ACGGA	3 cut(s)	1733, 2294, 3225
TspRI	CASTG	9 cut(s)	415, 687, 970, 1522, 1626, 1669, 2163, 2206, 3043
Van91I	CCANNNNNTGG	2 cut(s)	79, 1688
VneI	GTGCAC	1 cut(s)	1906
VpaK11BI	GGWCC	1 cut(s)	3223
VspI	ATTAAT	2 cut(s)	1980, 2655
XapI	RAATTY	7 cut(s)	1350, 1961, 2046, 2609, 2988, 3122, 3277
XbaI	TCTAGA	1 cut(s)	1282
XceI	RCATGY	1 cut(s)	2939
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1304
XmiI	GTMKAC	2 cut(s)	1471, 1784
XspI	CTAG	7 cut(s)	230, 431, 993, 1283, 1317, 1424, 2738
ZrmI	AGTACT	1 cut(s)	3248
Zsp2I	ATGCAT	2 cut(s)	2787, 2974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.