pycom17g14630

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0012920
Physical Location & Seq
Reverse (-)
12292185 .. 12293237
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 699 bp
ATGTACTATAAACAGCTAGGATATCTTCTGTGTGGACGGAAGACCTGTATCAGTTTGTATGGTGCTTTTAAATATCTAATATCTCAACCTTGTAAACTTCACATCCCTCTTCAGTTTTCTTCTTCACAGCCCTCTTCAGTTTTCGTCTTCTTCTCTCTAATCCCCCCACAAACGATGGTTTCCAAGTTCAAGAGGCCCTGCAACTTGATCGAGCCAGCTGCCCATAAGCTGGGCATCAGTGATAAAACCAGCCATGGGAGCTCAGTGGCTGTTGGATTGGGAATCCTTGTACAGAATTCACAAAGAAATAGGACAAATATCATTGAGAAATCTGCATTAAGACTGAGCCAATCCACAACCTACAGCTCCCTCGAGCAATTCTCTTGCTTTCTTAAAACATGTCACTTATGCAACAAGGGATTAAGCCTTGATAAAGAGGTCTACATGTACAGAGGTGATCTAGGTTTTTGCAGCATAGAGTGCAGGAACAGACAGATTGTTATTGATGACATGAAGGAATTAGAGGCTTCTACCAAGCAAATGATAACATCTTATAGGCGTGGCCTATATCGTTGCAGCCTTACTAAGAGTGGTAATGCTAACACTAGTAGGCGTGGCTCTCGCAACACTAATGTTTTTGAAGATGTACATCTGCAACAGGAGAAAACCAGACATCAAAGAAAGATATTTGTACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

233

Amino Acids

26.42

Weight (kDa)

9.68

Isoelectric Point (pI)

52.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 125 - 171 1.7e-18 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012920)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53885 AT1G53903
fragaria_vesca FvH4_6g35720
malus_domestica MD09G1173600.v1.1 MD17G1153400.v1.1
prunus_persica Prupe.3G031700_v2.0.a1
pyrus_communis pycom09g09100 pycom17g14630
rosa_chinensis RchiOBHm_Chr2g0147731
rosa_laevigata RLG00000020273
rosa_multiflora Rmu_sc0000308.1_g000023
rosa_roxburghii Rroxscaffold_2G00099370
rosa_rugosa Rorug02G0401400
rosa_samantha Rh2AG458500 Rh2BG471600 Rh2CG445800 Rh2DG480500
rosa_wichuraiana Rw2G037480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 229
AccI GTMKAC 1 cut(s) 441
AcsI RAATTY 1 cut(s) 295
AcuI CTGAAG 2 cut(s) 95, 120
AfaI GTAC 5 cut(s) 5, 291, 449, 648, 693
AfiI CCNNNNNNNGG 2 cut(s) 229, 255
AflIII ACRYGT 2 cut(s) 398, 444
AgsI TTSAA 2 cut(s) 190, 641
AhlI ACTAGT 1 cut(s) 605
AluBI AGCT 5 cut(s) 16, 218, 229, 261, 366
AluI AGCT 5 cut(s) 16, 218, 229, 261, 366
Alw21I GWGCWC 1 cut(s) 263
AlwNI CAGNNNCTG 1 cut(s) 269
Ama87I CYCGRG 1 cut(s) 371
AoxI GGCC 2 cut(s) 194, 562
ApeKI GCWGC 3 cut(s) 218, 471, 576
ApoI RAATTY 1 cut(s) 295
AspS9I GGNCC 1 cut(s) 195
AsuHPI GGTGA 1 cut(s) 467
AvaI CYCGRG 1 cut(s) 371
BanII GRGCYC 1 cut(s) 263
BbsI GAAGAC 2 cut(s) 47, 139
Bbv12I GWGCWC 1 cut(s) 263
BbvI GCAGC 3 cut(s) 205, 483, 588
BccI CCATC 1 cut(s) 169
BcgI CGANNNNNNTGC 4 cut(s) 190, 200, 224, 234
BcuI ACTAGT 1 cut(s) 605
BfaI CTAG 3 cut(s) 17, 461, 606
BfmI CTRYAG 1 cut(s) 361
BisI GCNGC 3 cut(s) 219, 472, 577
BlsI GCNGC 3 cut(s) 220, 473, 578
BmeT110I CYCGRG 1 cut(s) 371
BmgT120I GGNCC 1 cut(s) 195
BmsI GCATC 1 cut(s) 243
BpiI GAAGAC 2 cut(s) 47, 139
BplI GAGNNNNNCTC 2 cut(s) 365, 397
BsaBI GATNNNNATC 1 cut(s) 648
BsaJI CCNNGG 1 cut(s) 253
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 255
Bse8I GATNNNNATC 1 cut(s) 648
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 1 cut(s) 102
BseJI GATNNNNATC 1 cut(s) 648
BseLI CCNNNNNNNGG 2 cut(s) 229, 255
BseMII CTCAG 2 cut(s) 276, 335
BseXI GCAGC 3 cut(s) 205, 483, 588
BseYI CCCAGC 1 cut(s) 229
BsgI GTGCAG 1 cut(s) 502
BshFI GGCC 2 cut(s) 196, 564
BsiHKAI GWGCWC 1 cut(s) 263
BsiHKCI CYCGRG 1 cut(s) 371
BslI CCNNNNNNNGG 2 cut(s) 229, 255
BsnI GGCC 2 cut(s) 196, 564
BsoBI CYCGRG 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 263
Bsp1407I TGTACA 3 cut(s) 289, 447, 646
Bsp143I GATC 2 cut(s) 207, 457
Bsp19I CCATGG 1 cut(s) 253
BspANI GGCC 2 cut(s) 196, 564
BspCNI CTCAG 2 cut(s) 275, 336
BsrGI TGTACA 3 cut(s) 289, 447, 646
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 2 cut(s) 207, 457
BssT1I CCWWGG 1 cut(s) 253
Bst6I CTCTTC 2 cut(s) 114, 139
BstAPI GCANNNNNTGC 1 cut(s) 480
BstAUI TGTACA 3 cut(s) 289, 447, 646
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 3 cut(s) 262, 344, 585
BstDSI CCRYGG 1 cut(s) 253
BstF5I GGATG 1 cut(s) 102
BstKTI GATC 2 cut(s) 210, 460
BstMBI GATC 2 cut(s) 207, 457
BstMWI GCNNNNNNNGC 2 cut(s) 258, 480
BstNSI RCATGY 2 cut(s) 402, 448
BstSFI CTRYAG 1 cut(s) 361
BstV1I GCAGC 3 cut(s) 205, 483, 588
BstV2I GAAGAC 2 cut(s) 47, 139
BsuRI GGCC 2 cut(s) 196, 564
BtgI CCRYGG 1 cut(s) 253
BtsCI GGATG 1 cut(s) 102
BtsIMutI CAGTG 2 cut(s) 244, 270
Cac8I GCNNGC 1 cut(s) 216
CaiI CAGNNNCTG 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 195
Csp6I GTAC 5 cut(s) 4, 290, 448, 647, 692
CviAII CATG 4 cut(s) 254, 399, 445, 511
CviQI GTAC 5 cut(s) 4, 290, 448, 647, 692
DdeI CTNAG 3 cut(s) 262, 344, 585
DpnI GATC 2 cut(s) 209, 459
DpnII GATC 2 cut(s) 207, 457
DraI TTTAAA 1 cut(s) 70
Eam1104I CTCTTC 2 cut(s) 114, 139
EarI CTCTTC 2 cut(s) 114, 139
Ecl136II GAGCTC 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 263
Eco32I GATATC 1 cut(s) 23
Eco53kI GAGCTC 1 cut(s) 261
Eco57I CTGAAG 2 cut(s) 95, 120
Eco88I CYCGRG 1 cut(s) 371
EcoICRI GAGCTC 1 cut(s) 261
EcoO109I RGGNCCY 1 cut(s) 195
EcoRI GAATTC 1 cut(s) 295
EcoRV GATATC 1 cut(s) 23
EcoT14I CCWWGG 1 cut(s) 253
EcoT38I GRGCYC 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 253
FaeI CATG 4 cut(s) 257, 402, 448, 514
FatI CATG 4 cut(s) 253, 398, 444, 510
FblI GTMKAC 1 cut(s) 441
Fnu4HI GCNGC 3 cut(s) 219, 472, 577
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 1 cut(s) 263
Fsp4HI GCNGC 3 cut(s) 219, 472, 577
FspBI CTAG 3 cut(s) 17, 461, 606
GluI GCNGC 3 cut(s) 219, 472, 577
GsaI CCCAGC 1 cut(s) 233
HaeIII GGCC 2 cut(s) 196, 564
Hin1II CATG 4 cut(s) 257, 402, 448, 514
HinfI GANTC 1 cut(s) 282
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 3 cut(s) 35, 95, 442
Hpy188III TCNNGA 1 cut(s) 190
Hpy8I GTNNAC 3 cut(s) 35, 95, 442
HpyAV CCTTC 1 cut(s) 508
HpyCH4V TGCA 7 cut(s) 201, 335, 411, 471, 483, 576, 655
HpyF10VI GCNNNNNNNGC 2 cut(s) 258, 480
HpyF3I CTNAG 3 cut(s) 262, 344, 585
Hsp92II CATG 4 cut(s) 257, 402, 448, 514
Kzo9I GATC 2 cut(s) 207, 457
LmnI GCTCC 2 cut(s) 258, 371
LpnPI CCDG 8 cut(s) 58, 211, 215, 228, 262, 469, 644, 682
Lsp1109I GCAGC 3 cut(s) 205, 483, 588
LweI GCATC 1 cut(s) 243
MaeI CTAG 3 cut(s) 17, 461, 606
MaeIII GTNAC 1 cut(s) 401
MalI GATC 2 cut(s) 209, 459
MboI GATC 2 cut(s) 207, 457
MboII GAAGA 9 cut(s) 17, 52, 101, 111, 114, 126, 139, 142, 653
MhlI GDGCHC 1 cut(s) 263
MluCI AATT 3 cut(s) 295, 377, 518
MmeI TCCRAC 1 cut(s) 253
MnlI CCTC 7 cut(s) 117, 142, 186, 380, 430, 446, 517
MseI TTAA 4 cut(s) 69, 338, 393, 422
MspA1I CMGCKG 1 cut(s) 218
MwoI GCNNNNNNNGC 2 cut(s) 258, 480
NcoI CCATGG 1 cut(s) 253
NdeII GATC 2 cut(s) 207, 457
NlaIII CATG 4 cut(s) 257, 402, 448, 514
NmuCI GTSAC 1 cut(s) 401
NspI RCATGY 2 cut(s) 402, 448
PaeR7I CTCGAG 1 cut(s) 371
PciI ACATGT 2 cut(s) 398, 444
PfeI GAWTC 1 cut(s) 282
PflMI CCANNNNNTGG 1 cut(s) 229
PkrI GCNGC 3 cut(s) 220, 473, 578
PscI ACATGT 2 cut(s) 398, 444
Psp124BI GAGCTC 1 cut(s) 263
PspFI CCCAGC 1 cut(s) 229
PspPI GGNCC 1 cut(s) 195
PspXI VCTCGAGB 1 cut(s) 371
PstNI CAGNNNCTG 1 cut(s) 269
PvuII CAGCTG 1 cut(s) 218
RsaI GTAC 5 cut(s) 5, 291, 449, 648, 693
RsaNI GTAC 5 cut(s) 4, 290, 448, 647, 692
SacI GAGCTC 1 cut(s) 263
SaqAI TTAA 4 cut(s) 69, 338, 393, 422
SatI GCNGC 3 cut(s) 219, 472, 577
Sau3AI GATC 2 cut(s) 207, 457
Sau96I GGNCC 1 cut(s) 195
SduI GDGCHC 1 cut(s) 263
SfaNI GCATC 1 cut(s) 243
SfcI CTRYAG 1 cut(s) 361
Sfr274I CTCGAG 1 cut(s) 371
SlaI CTCGAG 1 cut(s) 371
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
SpeI ACTAGT 1 cut(s) 605
Sse9I AATT 3 cut(s) 295, 377, 518
SspMI CTAG 3 cut(s) 17, 461, 606
SstI GAGCTC 1 cut(s) 263
StyI CCWWGG 1 cut(s) 253
TaqI TCGA 2 cut(s) 210, 372
TasI AATT 3 cut(s) 295, 377, 518
TatI WGTACW 5 cut(s) 3, 289, 447, 646, 691
TfiI GAWTC 1 cut(s) 282
Tru1I TTAA 4 cut(s) 69, 338, 393, 422
Tru9I TTAA 4 cut(s) 69, 338, 393, 422
TscAI CASTG 2 cut(s) 244, 270
TseFI GTSAC 1 cut(s) 401
TseI GCWGC 3 cut(s) 218, 471, 576
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 1 cut(s) 527
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 2 cut(s) 244, 270
Van91I CCANNNNNTGG 1 cut(s) 229
XapI RAATTY 1 cut(s) 295
XceI RCATGY 2 cut(s) 402, 448
XhoI CTCGAG 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 441
XspI CTAG 3 cut(s) 17, 461, 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.