pycom17g14750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0010586
Physical Location & Seq
Forward (+)
12495753 .. 12496377
625 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 381 bp
ATGATCACAGCAATGGATTCGATCCTCATACCGACTTTTATCAGTGTACAGGCCAAGCACTATGTAGTAGAAGGAGACTTCCAGGCACCATCAGAAGAAGGTGCAGAGAGAAGATTGGGACAAGAGAAGAAGAAGAAGAAATCATGGAAAAAGTTTCTGTTTCCGTGGTTGAAAGGAGAGAAACTGAACAAAACTACTCCAAAACCAGCAACCGTATCTCATATTTCTAATGCGAAGCGGACTAATGTTTCCGGTCCAGTGTATGGCACCGGCAAGGCTACGGATGGCAAGCACCGGGGTCCAATGTCGGGGCCTATTGCCAGTCTCTTCAACCCCACAAAGAGAGAAGACAATGCAATGCCTTATATATATGTGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.0

Weight (kDa)

9.91

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 85, 266
AccB7I CCANNNNNTGG 1 cut(s) 263
AciI CCGC 1 cut(s) 238
AclWI GGATC 1 cut(s) 16
AfaI GTAC 1 cut(s) 48
AfiI CCNNNNNNNGG 2 cut(s) 263, 308
AgsI TTSAA 2 cut(s) 172, 331
AjnI CCWGG 1 cut(s) 81
Alw26I GTCTC 2 cut(s) 69, 329
AlwI GGATC 1 cut(s) 16
AoxI GGCC 2 cut(s) 51, 311
AspS9I GGNCC 3 cut(s) 254, 299, 311
AsuC2I CCSGG 1 cut(s) 296
AvaII GGWCC 2 cut(s) 254, 299
BanI GGYRCC 2 cut(s) 85, 266
BbsI GAAGAC 1 cut(s) 354
BccI CCATC 2 cut(s) 97, 278
BcgI CGANNNNNNTGC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 83
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 296
BcoDI GTCTC 2 cut(s) 69, 329
Bme1390I CCNGG 2 cut(s) 83, 296
Bme18I GGWCC 2 cut(s) 254, 299
BmgT120I GGNCC 3 cut(s) 254, 299, 311
BmiI GGNNCC 4 cut(s) 87, 268, 300, 312
BmrFI CCNGG 2 cut(s) 83, 296
BpiI GAAGAC 1 cut(s) 354
BpuMI CCSGG 1 cut(s) 296
BsaJI CCNNGG 2 cut(s) 164, 295
BsaWI WCCGGW 1 cut(s) 251
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 308
Bse118I RCCGGY 1 cut(s) 269
Bse1I ACTGG 2 cut(s) 257, 321
Bse3DI GCAATG 2 cut(s) 18, 363
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 2 cut(s) 164, 295
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 2 cut(s) 263, 308
BseMI GCAATG 2 cut(s) 18, 363
BseNI ACTGG 2 cut(s) 257, 321
BsgI GTGCAG 1 cut(s) 123
BshFI GGCC 2 cut(s) 53, 313
BshNI GGYRCC 2 cut(s) 85, 266
BsiSI CCGG 3 cut(s) 252, 270, 295
BslFI GGGAC 1 cut(s) 132
BslI CCNNNNNNNGG 2 cut(s) 263, 308
BsmAI GTCTC 2 cut(s) 69, 329
BsmFI GGGAC 1 cut(s) 132
BsnI GGCC 2 cut(s) 53, 313
Bsp1407I TGTACA 1 cut(s) 46
Bsp143I GATC 2 cut(s) 3, 21
BspACI CCGC 1 cut(s) 238
BspANI GGCC 2 cut(s) 53, 313
BspLI GGNNCC 4 cut(s) 87, 268, 300, 312
BspPI GGATC 1 cut(s) 16
BspT107I GGYRCC 2 cut(s) 85, 266
BsrDI GCAATG 2 cut(s) 18, 363
BsrFI RCCGGY 1 cut(s) 269
BsrGI TGTACA 1 cut(s) 46
BsrI ACTGG 2 cut(s) 257, 321
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 2 cut(s) 164, 295
BssMI GATC 2 cut(s) 3, 21
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 1 cut(s) 332
BstAUI TGTACA 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 290
BstDSI CCRYGG 1 cut(s) 164
BstF5I GGATG 1 cut(s) 289
BstKTI GATC 2 cut(s) 6, 24
BstMAI GTCTC 2 cut(s) 69, 329
BstMBI GATC 2 cut(s) 3, 21
BstNI CCWGG 1 cut(s) 83
BstSCI CCNGG 2 cut(s) 81, 294
BstV2I GAAGAC 1 cut(s) 354
BsuRI GGCC 2 cut(s) 53, 313
BtgI CCRYGG 1 cut(s) 164
BtsCI GGATG 1 cut(s) 289
BtsIMutI CAGTG 2 cut(s) 49, 264
Cac8I GCNNGC 1 cut(s) 290
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 3 cut(s) 254, 299, 311
Csp6I GTAC 1 cut(s) 47
CviAII CATG 1 cut(s) 144
CviJI RGCY 3 cut(s) 53, 278, 313
CviKI_1 RGCY 3 cut(s) 53, 278, 313
CviQI GTAC 1 cut(s) 47
DpnI GATC 2 cut(s) 5, 23
DpnII GATC 2 cut(s) 3, 21
Eam1104I CTCTTC 1 cut(s) 332
EarI CTCTTC 1 cut(s) 332
Eco47I GGWCC 2 cut(s) 254, 299
EcoO109I RGGNCCY 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 81
FaeI CATG 1 cut(s) 147
FaiI YATR 9 cut(s) 29, 63, 145, 222, 264, 366, 368, 370, 372
FaqI GGGAC 1 cut(s) 132
FatI CATG 1 cut(s) 143
FbaI TGATCA 1 cut(s) 3
FokI GGATG 1 cut(s) 296
HaeIII GGCC 2 cut(s) 53, 313
HapII CCGG 3 cut(s) 252, 270, 295
Hin1II CATG 1 cut(s) 147
HinfI GANTC 1 cut(s) 17
HpaII CCGG 3 cut(s) 252, 270, 295
Hpy166II GTNNAC 1 cut(s) 47
Hpy188I TCNGA 1 cut(s) 94
Hpy8I GTNNAC 1 cut(s) 47
HpyAV CCTTC 2 cut(s) 65, 92
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4V TGCA 2 cut(s) 104, 356
Hsp92II CATG 1 cut(s) 147
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 21
LpnPI CCDG 9 cut(s) 35, 68, 95, 219, 265, 270, 283, 308, 334
MalI GATC 2 cut(s) 5, 23
MboI GATC 2 cut(s) 3, 21
MboII GAAGA 8 cut(s) 107, 123, 139, 142, 145, 148, 319, 359
MnlI CCTC 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 11
MspI CCGG 3 cut(s) 252, 270, 295
MspR9I CCNGG 2 cut(s) 83, 296
MvaI CCWGG 1 cut(s) 83
NciI CCSGG 1 cut(s) 296
NdeII GATC 2 cut(s) 3, 21
NlaIII CATG 1 cut(s) 147
NlaIV GGNNCC 4 cut(s) 87, 268, 300, 312
PfeI GAWTC 1 cut(s) 17
PflMI CCANNNNNTGG 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 4 cut(s) 87, 268, 300, 312
PspPI GGNCC 3 cut(s) 254, 299, 311
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
RseI CAYNNNNRTG 1 cut(s) 11
Sau3AI GATC 2 cut(s) 3, 21
Sau96I GGNCC 3 cut(s) 254, 299, 311
ScrFI CCNGG 2 cut(s) 83, 296
SetI ASST 1 cut(s) 103
SinI GGWCC 2 cut(s) 254, 299
SmiMI CAYNNNNRTG 1 cut(s) 11
SsiI CCGC 1 cut(s) 238
StyD4I CCNGG 2 cut(s) 81, 294
TaaI ACNGT 1 cut(s) 214
TaqI TCGA 1 cut(s) 20
TatI WGTACW 1 cut(s) 46
TfiI GAWTC 1 cut(s) 17
TscAI CASTG 2 cut(s) 49, 264
TspGWI ACGGA 2 cut(s) 153, 296
TspRI CASTG 2 cut(s) 49, 264
Van91I CCANNNNNTGG 1 cut(s) 263
VpaK11BI GGWCC 2 cut(s) 254, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.