Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003670

Physical Location & Seq

Genomic Coordinates Forward (+)

14905959 .. 14908004

Gene Structure 2046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAATCCGACGCAGAAGACACCAAGTCCCAATTAACCCAAAACCATGACACATCGACGCCGAAGCACAAGCACAAGAAGAGGAAGACGAAGAAAGCCACCGTACCAACCATTCCAACCGTCCAAGCCGCCGTCCAAGTCTACCCGGAAAACCCAGAGAAAACCCCACCTATAGTGGCCCATTTCTCATCTGGGTTCGACCCCACCAAGAAGCCAGACCCCAATTCGACCAAAATCGGGCTCTTTCGGAACGCCAACCGAGCCAAACGGGTCGAGCTTGTGGTGCACCCGGATGGGACCAATGTTGATTTTGTCGGGACTAGCTATACTGGTGCGGCCACGAGTGACCAGTACTGCAATTATGCGCTTGGTGTTCTTGATAAGGCCACTCAGACTCTGAAGATTGTACCTATTGTTTCTAACAAGATATTTAGATTAGAACCAAAAGTTAGAGGGTATAACTACTCTGATATGGAACCTGCAACTTCAGCGGTGGGAGAACTTACTGCACAAGAGAAGGCAGAGAAGCAGATGCAACTACATAATCTGTATGGAACAAAGAAGTCTATTAGGGAGAGTAAGAAAATGCAGTCCTTGAAGCAAGCAGACGGTCCTGATTCTCTAAAGGATTTGGATGCCAAAATTAAACATCTTGTGGTAAACAAGGAGGCTCTTGAAAGCGCTGAAGCCCAAAGCTCTCGCCATATCCCACCATTTAACGAATCTGCCACAACTCCCAAGGAGGCTTATCCACTAGACAAGATCGATCATCACAGGAGAGTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_I_A49

Protein Analysis

263

Amino Acids

29.07

Weight (kDa)

9.3

Isoelectric Point (pI)

29.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_I_A49	PF06870	74 - 255	2.2e-22	A49-like RNA polymerase I associated factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13940
fragaria_vesca	FvH4_2g14600 FvH4_2g14600 FvH4_2g14600 FvH4_6g34180 FvH4_6g47280
malus_domestica	MD09G1187900.v1.1 MD17G1172300.v1.1
prunus_persica	Prupe.3G044800_v2.0.a1
pyrus_communis	pycom09g10420 pycom09g10430 pycom17g16990 pycom17g17000
rosa_chinensis	RchiOBHm_Chr2g0144531 RchiOBHm_Chr2g0166351
rosa_laevigata	RLG00000020086 RLG00000021613
rosa_multiflora	Rmu_sc0005789.1_g000005 Rmu_sc0007974.1_g000004 Rmu_sc0029020.1_g000001 Rmu_sc0029020.1_g000002
rosa_roxburghii	Rroxscaffold_2G00084950 Rroxscaffold_2G00101230
rosa_rugosa	Rorug02G0387600 Rorug02G0522400
rosa_samantha	Rh2AG439600 Rh2AG588500 Rh2BG449700 Rh2BG600500 Rh2CG426600 Rh2CG571300 Rh2DG459600 Rh2DG610700
rosa_wichuraiana	Rw2G035960 Rw2G049040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	487
AccI	GTMKAC	1 cut(s)	141
AciI	CCGC	3 cut(s)	129, 335, 491
AcoI	YGGCCR	1 cut(s)	336
AcuI	CTGAAG	3 cut(s)	419, 471, 705
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	3 cut(s)	105, 353, 408
AfeI	AGCGCT	1 cut(s)	682
AfiI	CCNNNNNNNGG	1 cut(s)	237
AgsI	TTSAA	2 cut(s)	598, 677
AhdI	GACNNNNNGTC	1 cut(s)	25
AluBI	AGCT	3 cut(s)	277, 324, 696
AluI	AGCT	3 cut(s)	277, 324, 696
Alw21I	GWGCWC	1 cut(s)	288
Alw44I	GTGCAC	1 cut(s)	284
AlwNI	CAGNNNCTG	1 cut(s)	397
Aor51HI	AGCGCT	1 cut(s)	682
AoxI	GGCC	3 cut(s)	177, 336, 384
ApaLI	GTGCAC	1 cut(s)	284
AspLEI	GCGC	2 cut(s)	367, 683
AspS9I	GGNCC	3 cut(s)	178, 297, 611
AsuC2I	CCSGG	2 cut(s)	146, 290
AvaII	GGWCC	2 cut(s)	297, 611
BaeGI	GKGCMC	1 cut(s)	288
BanII	GRGCYC	1 cut(s)	243
BauI	CACGAG	1 cut(s)	340
BbsI	GAAGAC	2 cut(s)	24, 92
Bbv12I	GWGCWC	1 cut(s)	288
BccI	CCATC	1 cut(s)	287
BceAI	ACGGC	1 cut(s)	116
BcnI	CCSGG	2 cut(s)	146, 290
BfaI	CTAG	2 cut(s)	321, 755
BfmI	CTRYAG	1 cut(s)	171
BfoI	RGCGCY	1 cut(s)	684
BfuAI	ACCTGC	1 cut(s)	487
BisI	GCNGC	2 cut(s)	129, 336
BlsI	GCNGC	2 cut(s)	130, 337
BmcAI	AGTACT	1 cut(s)	353
Bme1390I	CCNGG	2 cut(s)	146, 290
Bme18I	GGWCC	2 cut(s)	297, 611
BmeRI	GACNNNNNGTC	1 cut(s)	25
BmgT120I	GGNCC	3 cut(s)	178, 297, 611
BmiI	GGNNCC	2 cut(s)	298, 477
BmrFI	CCNGG	2 cut(s)	146, 290
BmsI	GCATC	2 cut(s)	522, 625
BpiI	GAAGAC	2 cut(s)	24, 92
BpuMI	CCSGG	2 cut(s)	146, 290
Bsa29I	ATCGAT	1 cut(s)	765
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	738
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse1I	ACTGG	2 cut(s)	334, 349
BseCI	ATCGAT	1 cut(s)	765
BseDI	CCNNGG	1 cut(s)	738
BseGI	GGATG	2 cut(s)	298, 640
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	2 cut(s)	334, 349
BseSI	GKGCMC	1 cut(s)	288
BsgI	GTGCAG	1 cut(s)	492
BshFI	GGCC	3 cut(s)	179, 338, 386
BshVI	ATCGAT	1 cut(s)	765
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	2 cut(s)	146, 290
BslFI	GGGAC	3 cut(s)	13, 310, 331
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmFI	GGGAC	3 cut(s)	13, 310, 331
BsnI	GGCC	3 cut(s)	179, 338, 386
Bsp1286I	GDGCHC	2 cut(s)	243, 288
Bsp143I	GATC	2 cut(s)	762, 766
BspACI	CCGC	3 cut(s)	129, 335, 491
BspANI	GGCC	3 cut(s)	179, 338, 386
BspCNI	CTCAG	1 cut(s)	403
BspDI	ATCGAT	1 cut(s)	765
BspLI	GGNNCC	2 cut(s)	298, 477
BspMI	ACCTGC	1 cut(s)	487
BsrI	ACTGG	2 cut(s)	334, 349
BssECI	CCNNGG	1 cut(s)	738
BssMI	GATC	2 cut(s)	762, 766
BssNI	GRCGYC	1 cut(s)	59
BssSI	CACGAG	1 cut(s)	340
BssT1I	CCWWGG	1 cut(s)	738
Bst2BI	CACGAG	1 cut(s)	340
Bst4CI	ACNGT	3 cut(s)	103, 121, 611
Bst6I	CTCTTC	1 cut(s)	74
BstACI	GRCGYC	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	603
BstDEI	CTNAG	1 cut(s)	390
BstF5I	GGATG	2 cut(s)	298, 640
BstH2I	RGCGCY	1 cut(s)	684
BstHHI	GCGC	2 cut(s)	367, 683
BstKTI	GATC	2 cut(s)	765, 769
BstMBI	GATC	2 cut(s)	762, 766
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 283, 488
BstSCI	CCNGG	2 cut(s)	144, 288
BstSFI	CTRYAG	1 cut(s)	171
BstSLI	GKGCMC	1 cut(s)	288
BstV2I	GAAGAC	2 cut(s)	24, 92
Bsu15I	ATCGAT	1 cut(s)	765
BsuRI	GGCC	3 cut(s)	179, 338, 386
BsuTUI	ATCGAT	1 cut(s)	765
BtsCI	GGATG	2 cut(s)	298, 640
BveI	ACCTGC	1 cut(s)	487
Cac8I	GCNNGC	1 cut(s)	603
CaiI	CAGNNNCTG	1 cut(s)	397
CfoI	GCGC	2 cut(s)	367, 683
Cfr13I	GGNCC	3 cut(s)	178, 297, 611
ClaI	ATCGAT	1 cut(s)	765
CseI	GACGC	2 cut(s)	20, 67
Csp6I	GTAC	3 cut(s)	104, 352, 407
CviAII	CATG	1 cut(s)	47
CviQI	GTAC	3 cut(s)	104, 352, 407
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	2 cut(s)	764, 768
DpnII	GATC	2 cut(s)	762, 766
DriI	GACNNNNNGTC	1 cut(s)	25
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	74
Eam1105I	GACNNNNNGTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	738
Eco24I	GRGCYC	1 cut(s)	243
Eco47I	GGWCC	2 cut(s)	297, 611
Eco47III	AGCGCT	1 cut(s)	682
Eco57I	CTGAAG	3 cut(s)	419, 471, 705
EcoT14I	CCWWGG	1 cut(s)	738
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	738
FaeI	CATG	1 cut(s)	50
FaiI	YATR	9 cut(s)	48, 173, 327, 363, 459, 473, 543, 552, 705
FaqI	GGGAC	3 cut(s)	13, 310, 331
FatI	CATG	1 cut(s)	46
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	2 cut(s)	129, 336
FokI	GGATG	2 cut(s)	305, 647
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	2 cut(s)	129, 336
FspBI	CTAG	2 cut(s)	321, 755
GlaI	GCGC	2 cut(s)	366, 682
GluI	GCNGC	2 cut(s)	129, 336
HaeII	RGCGCY	1 cut(s)	684
HaeIII	GGCC	3 cut(s)	179, 338, 386
HapII	CCGG	2 cut(s)	146, 290
HgaI	GACGC	2 cut(s)	20, 67
HhaI	GCGC	2 cut(s)	367, 683
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	1 cut(s)	50
Hin6I	GCGC	2 cut(s)	365, 681
HinP1I	GCGC	2 cut(s)	365, 681
HinfI	GANTC	4 cut(s)	5, 394, 617, 722
HpaII	CCGG	2 cut(s)	146, 290
Hpy166II	GTNNAC	3 cut(s)	142, 286, 661
Hpy188I	TCNGA	5 cut(s)	10, 249, 393, 399, 469
Hpy188III	TCNNGA	4 cut(s)	316, 377, 614, 674
Hpy8I	GTNNAC	3 cut(s)	142, 286, 661
Hpy99I	CGWCG	2 cut(s)	14, 61
HpyAV	CCTTC	1 cut(s)	511
HpyCH4III	ACNGT	3 cut(s)	103, 121, 611
HpyCH4V	TGCA	6 cut(s)	286, 357, 482, 509, 535, 589
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 283, 488
HpyF3I	CTNAG	1 cut(s)	390
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	1 cut(s)	50
HspAI	GCGC	2 cut(s)	365, 681
Kzo9I	GATC	2 cut(s)	762, 766
LweI	GCATC	2 cut(s)	522, 625
MaeI	CTAG	2 cut(s)	321, 755
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	2 cut(s)	764, 768
MboI	GATC	2 cut(s)	762, 766
MboII	GAAGA	5 cut(s)	29, 91, 97, 103, 412
MhlI	GDGCHC	2 cut(s)	243, 288
MluCI	AATT	4 cut(s)	32, 223, 358, 642
MlyI	GAGTC	1 cut(s)	388
MmeI	TCCRAC	2 cut(s)	33, 140
MnlI	CCTC	4 cut(s)	75, 446, 661, 736
MseI	TTAA	3 cut(s)	35, 645, 717
MslI	CAYNNNNRTG	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	491
MspI	CCGG	2 cut(s)	146, 290
MspR9I	CCNGG	2 cut(s)	146, 290
MwoI	GCNNNNNNNGC	3 cut(s)	260, 283, 488
NciI	CCSGG	2 cut(s)	146, 290
NdeII	GATC	2 cut(s)	762, 766
NlaIII	CATG	1 cut(s)	50
NlaIV	GGNNCC	2 cut(s)	298, 477
NmuCI	GTSAC	1 cut(s)	344
PfeI	GAWTC	3 cut(s)	5, 617, 722
PkrI	GCNGC	2 cut(s)	130, 337
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	298, 477
PspPI	GGNCC	3 cut(s)	178, 297, 611
PstNI	CAGNNNCTG	1 cut(s)	397
RsaI	GTAC	3 cut(s)	105, 353, 408
RsaNI	GTAC	3 cut(s)	104, 352, 407
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	3 cut(s)	35, 645, 717
SatI	GCNGC	2 cut(s)	129, 336
Sau3AI	GATC	2 cut(s)	762, 766
Sau96I	GGNCC	3 cut(s)	178, 297, 611
ScaI	AGTACT	1 cut(s)	353
SchI	GAGTC	1 cut(s)	388
ScrFI	CCNGG	2 cut(s)	146, 290
SduI	GDGCHC	2 cut(s)	243, 288
SetI	ASST	6 cut(s)	172, 279, 326, 412, 481, 698
SfaNI	GCATC	2 cut(s)	522, 625
SfcI	CTRYAG	1 cut(s)	171
SinI	GGWCC	2 cut(s)	297, 611
SmiMI	CAYNNNNRTG	1 cut(s)	291
Sse9I	AATT	4 cut(s)	32, 223, 358, 642
SsiI	CCGC	3 cut(s)	129, 335, 491
SspMI	CTAG	2 cut(s)	321, 755
StyD4I	CCNGG	2 cut(s)	144, 288
StyI	CCWWGG	1 cut(s)	738
TaaI	ACNGT	3 cut(s)	103, 121, 611
TaqI	TCGA	5 cut(s)	56, 198, 227, 273, 765
TasI	AATT	4 cut(s)	32, 223, 358, 642
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	2 cut(s)	131, 338
TfiI	GAWTC	3 cut(s)	5, 617, 722
Tru1I	TTAA	3 cut(s)	35, 645, 717
Tru9I	TTAA	3 cut(s)	35, 645, 717
TseFI	GTSAC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	344
VneI	GTGCAC	1 cut(s)	284
VpaK11BI	GGWCC	2 cut(s)	297, 611
XcmI	CCANNNNNNNNNTGG	1 cut(s)	188
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	2 cut(s)	321, 755
ZrmI	AGTACT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.