The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G54220 AT1G54220 AT3G13930 |
| fragaria_vesca | FvH4_6g34140 FvH4_6g34140 FvH4_6g34140 |
| malus_domestica | MD09G1188500.v1.1 MD17G1172600.v1.1 |
| prunus_persica | Prupe.3G045200_v2.0.a1 Prupe.3G045200_v2.0.a1 |
| pyrus_communis | pycom09g10560 pycom17g17050 |
| rosa_chinensis | RchiOBHm_Chr2g0144451 |
| rosa_laevigata | RLG00000020082 |
| rosa_multiflora | Rmu_sc0003475.1_g000006 |
| rosa_roxburghii | Rroxscaffold_2G00101300 |
| rosa_rugosa | Rorug02G0386700 Rorug02G0386800 |
| rosa_samantha | Rh2AG439000 Rh2BG449300 Rh2CG426100 Rh2DG459100 |
| rosa_wichuraiana | Rw2G035920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 931 |
| Acc36I | ACCTGC | 1 cut(s) | 931 |
| AccB1I | GGYRCC | 2 cut(s) | 533, 629 |
| AciI | CCGC | 4 cut(s) | 171, 1102, 1195, 1574 |
| AclWI | GGATC | 3 cut(s) | 274, 551, 1468 |
| AcsI | RAATTY | 2 cut(s) | 599, 1384 |
| AcuI | CTGAAG | 3 cut(s) | 141, 431, 816 |
| AdeI | CACNNNGTG | 1 cut(s) | 1210 |
| AfaI | GTAC | 3 cut(s) | 214, 1254, 1482 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1263, 1442, 1473, 1490 |
| AflIII | ACRYGT | 1 cut(s) | 1521 |
| AjnI | CCWGG | 2 cut(s) | 221, 436 |
| AluBI | AGCT | 9 cut(s) | 286, 473, 647, 899, 908, 977, 1315, 1341, 1539 |
| AluI | AGCT | 9 cut(s) | 286, 473, 647, 899, 908, 977, 1315, 1341, 1539 |
| Alw21I | GWGCWC | 2 cut(s) | 640, 804 |
| AlwI | GGATC | 3 cut(s) | 274, 551, 1468 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 839, 923 |
| AoxI | GGCC | 4 cut(s) | 334, 1063, 1317, 1493 |
| ApaI | GGGCCC | 1 cut(s) | 1497 |
| ApeKI | GCWGC | 7 cut(s) | 644, 740, 917, 926, 1133, 1136, 1312 |
| ApoI | RAATTY | 2 cut(s) | 599, 1384 |
| AseI | ATTAAT | 1 cut(s) | 1218 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 699 |
| AspS9I | GGNCC | 5 cut(s) | 836, 1318, 1394, 1493, 1494 |
| AsuC2I | CCSGG | 1 cut(s) | 1492 |
| AsuHPI | GGTGA | 5 cut(s) | 366, 434, 452, 571, 1390 |
| AvaII | GGWCC | 2 cut(s) | 836, 1394 |
| BaeGI | GKGCMC | 1 cut(s) | 1497 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1023, 1056 |
| BanI | GGYRCC | 2 cut(s) | 533, 629 |
| BanII | GRGCYC | 1 cut(s) | 1497 |
| Bbv12I | GWGCWC | 2 cut(s) | 640, 804 |
| BbvI | GCAGC | 7 cut(s) | 656, 727, 929, 938, 1120, 1123, 1324 |
| BccI | CCATC | 6 cut(s) | 478, 494, 524, 625, 836, 1553 |
| BceAI | ACGGC | 1 cut(s) | 80 |
| BciT130I | CCWGG | 2 cut(s) | 223, 438 |
| BclI | TGATCA | 1 cut(s) | 1543 |
| BcnI | CCSGG | 1 cut(s) | 1492 |
| BfaI | CTAG | 5 cut(s) | 117, 177, 248, 402, 1485 |
| BfmI | CTRYAG | 3 cut(s) | 474, 642, 924 |
| BfuAI | ACCTGC | 1 cut(s) | 931 |
| BisI | GCNGC | 7 cut(s) | 645, 741, 918, 927, 1134, 1137, 1313 |
| BlpI | GCTNAGC | 1 cut(s) | 1535 |
| BlsI | GCNGC | 7 cut(s) | 646, 742, 919, 928, 1135, 1138, 1314 |
| Bme1390I | CCNGG | 3 cut(s) | 223, 438, 1492 |
| Bme18I | GGWCC | 2 cut(s) | 836, 1394 |
| BmgT120I | GGNCC | 5 cut(s) | 836, 1318, 1394, 1493, 1494 |
| BmiI | GGNNCC | 5 cut(s) | 535, 631, 810, 1158, 1495 |
| BmrFI | CCNGG | 3 cut(s) | 223, 438, 1492 |
| BmrI | ACTGGG | 1 cut(s) | 720 |
| BmsI | GCATC | 7 cut(s) | 20, 319, 351, 632, 1097, 1258, 1413 |
| BmuI | ACTGGG | 1 cut(s) | 720 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1053, 1085 |
| BpmI | CTGGAG | 1 cut(s) | 774 |
| Bpu10I | CCTNAGC | 2 cut(s) | 909, 1583 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1535 |
| BpuEI | CTTGAG | 1 cut(s) | 802 |
| BpuMI | CCSGG | 1 cut(s) | 1492 |
| Bsa29I | ATCGAT | 1 cut(s) | 1557 |
| BsaBI | GATNNNNATC | 1 cut(s) | 504 |
| BsaJI | CCNNGG | 3 cut(s) | 222, 538, 1299 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1263, 1442, 1473, 1490 |
| Bse1I | ACTGG | 4 cut(s) | 633, 698, 726, 1198 |
| Bse8I | GATNNNNATC | 1 cut(s) | 504 |
| BseBI | CCWGG | 2 cut(s) | 223, 438 |
| BseCI | ATCGAT | 1 cut(s) | 1557 |
| BseDI | CCNNGG | 3 cut(s) | 222, 538, 1299 |
| BseGI | GGATG | 5 cut(s) | 21, 366, 592, 1191, 1273 |
| BseJI | GATNNNNATC | 1 cut(s) | 504 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1263, 1442, 1473, 1490 |
| BseMII | CTCAG | 4 cut(s) | 378, 651, 971, 1605 |
| BseNI | ACTGG | 4 cut(s) | 633, 698, 726, 1198 |
| BseRI | GAGGAG | 3 cut(s) | 596, 1316, 1425 |
| BseSI | GKGCMC | 1 cut(s) | 1497 |
| BseXI | GCAGC | 7 cut(s) | 656, 727, 929, 938, 1120, 1123, 1324 |
| BsgI | GTGCAG | 2 cut(s) | 936, 1250 |
| BshFI | GGCC | 4 cut(s) | 336, 1065, 1319, 1495 |
| BshNI | GGYRCC | 2 cut(s) | 533, 629 |
| BshVI | ATCGAT | 1 cut(s) | 1557 |
| BsiHKAI | GWGCWC | 2 cut(s) | 640, 804 |
| BsiSI | CCGG | 1 cut(s) | 1491 |
| BslFI | GGGAC | 1 cut(s) | 1296 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1263, 1442, 1473, 1490 |
| BsmFI | GGGAC | 1 cut(s) | 1296 |
| BsmI | GAATGC | 4 cut(s) | 52, 494, 1446, 1589 |
| BsnI | GGCC | 4 cut(s) | 336, 1065, 1319, 1495 |
| Bsp120I | GGGCCC | 1 cut(s) | 1493 |
| Bsp1286I | GDGCHC | 3 cut(s) | 640, 804, 1497 |
| Bsp143I | GATC | 7 cut(s) | 266, 543, 757, 969, 1117, 1460, 1543 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1535 |
| BspACI | CCGC | 4 cut(s) | 171, 1102, 1195, 1574 |
| BspANI | GGCC | 4 cut(s) | 336, 1065, 1319, 1495 |
| BspCNI | CTCAG | 4 cut(s) | 379, 652, 970, 1606 |
| BspDI | ATCGAT | 1 cut(s) | 1557 |
| BspLI | GGNNCC | 5 cut(s) | 535, 631, 810, 1158, 1495 |
| BspMAI | CTGCAG | 2 cut(s) | 646, 928 |
| BspMI | ACCTGC | 1 cut(s) | 931 |
| BspPI | GGATC | 3 cut(s) | 274, 551, 1468 |
| BspQI | GCTCTTC | 2 cut(s) | 792, 1152 |
| BspT107I | GGYRCC | 2 cut(s) | 533, 629 |
| BsrI | ACTGG | 4 cut(s) | 633, 698, 726, 1198 |
| BssECI | CCNNGG | 3 cut(s) | 222, 538, 1299 |
| BssMI | GATC | 7 cut(s) | 266, 543, 757, 969, 1117, 1460, 1543 |
| BssT1I | CCWWGG | 1 cut(s) | 538 |
| Bst2UI | CCWGG | 2 cut(s) | 223, 438 |
| Bst4CI | ACNGT | 7 cut(s) | 146, 306, 478, 574, 1027, 1248, 1378 |
| Bst6I | CTCTTC | 5 cut(s) | 573, 792, 864, 1152, 1466 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 629, 737, 923, 1571 |
| BstC8I | GCNNGC | 4 cut(s) | 75, 169, 334, 1317 |
| BstDEI | CTNAG | 7 cut(s) | 387, 660, 909, 957, 1535, 1583, 1614 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1440 |
| BstF5I | GGATG | 5 cut(s) | 21, 366, 592, 1191, 1273 |
| BstKTI | GATC | 7 cut(s) | 269, 546, 760, 972, 1120, 1463, 1546 |
| BstMBI | GATC | 7 cut(s) | 266, 543, 757, 969, 1117, 1460, 1543 |
| BstNI | CCWGG | 2 cut(s) | 223, 438 |
| BstNSI | RCATGY | 2 cut(s) | 1038, 1525 |
| BstSCI | CCNGG | 3 cut(s) | 221, 436, 1490 |
| BstSFI | CTRYAG | 3 cut(s) | 474, 642, 924 |
| BstSLI | GKGCMC | 1 cut(s) | 1497 |
| BstV1I | GCAGC | 7 cut(s) | 656, 727, 929, 938, 1120, 1123, 1324 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 356 |
| Bsu15I | ATCGAT | 1 cut(s) | 1557 |
| BsuRI | GGCC | 4 cut(s) | 336, 1065, 1319, 1495 |
| BsuTUI | ATCGAT | 1 cut(s) | 1557 |
| BtgZI | GCGATG | 1 cut(s) | 122 |
| BtsCI | GGATG | 5 cut(s) | 21, 366, 592, 1191, 1273 |
| BtsIMutI | CAGTG | 4 cut(s) | 210, 483, 640, 733 |
| BveI | ACCTGC | 1 cut(s) | 931 |
| Cac8I | GCNNGC | 4 cut(s) | 75, 169, 334, 1317 |
| CaiI | CAGNNNCTG | 2 cut(s) | 839, 923 |
| Cfr13I | GGNCC | 5 cut(s) | 836, 1318, 1394, 1493, 1494 |
| ClaI | ATCGAT | 1 cut(s) | 1557 |
| Csp6I | GTAC | 3 cut(s) | 213, 1253, 1481 |
| CviAII | CATG | 9 cut(s) | 101, 291, 382, 493, 887, 1035, 1051, 1176, 1522 |
| CviQI | GTAC | 3 cut(s) | 213, 1253, 1481 |
| DdeI | CTNAG | 7 cut(s) | 387, 660, 909, 957, 1535, 1583, 1614 |
| DpnI | GATC | 7 cut(s) | 268, 545, 759, 971, 1119, 1462, 1545 |
| DpnII | GATC | 7 cut(s) | 266, 543, 757, 969, 1117, 1460, 1543 |
| DraI | TTTAAA | 1 cut(s) | 604 |
| DraIII | CACNNNGTG | 1 cut(s) | 1210 |
| Eam1104I | CTCTTC | 5 cut(s) | 573, 792, 864, 1152, 1466 |
| EarI | CTCTTC | 5 cut(s) | 573, 792, 864, 1152, 1466 |
| EciI | GGCGGA | 1 cut(s) | 1184 |
| Eco130I | CCWWGG | 1 cut(s) | 538 |
| Eco147I | AGGCCT | 1 cut(s) | 336 |
| Eco24I | GRGCYC | 1 cut(s) | 1497 |
| Eco32I | GATATC | 3 cut(s) | 229, 946, 1107 |
| Eco47I | GGWCC | 2 cut(s) | 836, 1394 |
| Eco57I | CTGAAG | 3 cut(s) | 141, 431, 816 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1440 |
| EcoO109I | RGGNCCY | 1 cut(s) | 836 |
| EcoRII | CCWGG | 2 cut(s) | 221, 436 |
| EcoRV | GATATC | 3 cut(s) | 229, 946, 1107 |
| EcoT14I | CCWWGG | 1 cut(s) | 538 |
| EcoT22I | ATGCAT | 1 cut(s) | 494 |
| EcoT38I | GRGCYC | 1 cut(s) | 1497 |
| ErhI | CCWWGG | 1 cut(s) | 538 |
| FaeI | CATG | 9 cut(s) | 104, 294, 385, 496, 890, 1038, 1054, 1179, 1525 |
| FaqI | GGGAC | 1 cut(s) | 1296 |
| FatI | CATG | 9 cut(s) | 100, 290, 381, 492, 886, 1034, 1050, 1175, 1521 |
| FbaI | TGATCA | 1 cut(s) | 1543 |
| Fnu4HI | GCNGC | 7 cut(s) | 645, 741, 918, 927, 1134, 1137, 1313 |
| FokI | GGATG | 5 cut(s) | 8, 373, 599, 1178, 1280 |
| FriOI | GRGCYC | 1 cut(s) | 1497 |
| Fsp4HI | GCNGC | 7 cut(s) | 645, 741, 918, 927, 1134, 1137, 1313 |
| FspBI | CTAG | 5 cut(s) | 117, 177, 248, 402, 1485 |
| GluI | GCNGC | 7 cut(s) | 645, 741, 918, 927, 1134, 1137, 1313 |
| GsuI | CTGGAG | 1 cut(s) | 774 |
| HaeIII | GGCC | 4 cut(s) | 336, 1065, 1319, 1495 |
| HapII | CCGG | 1 cut(s) | 1491 |
| Hin1II | CATG | 9 cut(s) | 104, 294, 385, 496, 890, 1038, 1054, 1179, 1525 |
| HinfI | GANTC | 4 cut(s) | 517, 1047, 1609, 1616 |
| HpaII | CCGG | 1 cut(s) | 1491 |
| HphI | GGTGA | 5 cut(s) | 366, 434, 452, 571, 1390 |
| Hpy166II | GTNNAC | 1 cut(s) | 1213 |
| Hpy188I | TCNGA | 5 cut(s) | 160, 328, 388, 661, 960 |
| Hpy188III | TCNNGA | 6 cut(s) | 264, 704, 753, 839, 981, 1613 |
| Hpy8I | GTNNAC | 1 cut(s) | 1213 |
| HpyAV | CCTTC | 7 cut(s) | 124, 165, 375, 759, 850, 886, 1273 |
| HpyCH4III | ACNGT | 7 cut(s) | 146, 306, 478, 574, 1027, 1248, 1378 |
| HpyCH4IV | ACGT | 2 cut(s) | 1209, 1602 |
| HpyF3I | CTNAG | 7 cut(s) | 387, 660, 909, 957, 1535, 1583, 1614 |
| HpySE526I | ACGT | 2 cut(s) | 1209, 1602 |
| Hsp92II | CATG | 9 cut(s) | 104, 294, 385, 496, 890, 1038, 1054, 1179, 1525 |
| Ksp22I | TGATCA | 1 cut(s) | 1543 |
| Kzo9I | GATC | 7 cut(s) | 266, 543, 757, 969, 1117, 1460, 1543 |
| LguI | GCTCTTC | 2 cut(s) | 792, 1152 |
| LmnI | GCTCC | 3 cut(s) | 55, 643, 904 |
| Lsp1109I | GCAGC | 7 cut(s) | 656, 727, 929, 938, 1120, 1123, 1324 |
| LweI | GCATC | 7 cut(s) | 20, 319, 351, 632, 1097, 1258, 1413 |
| MaeI | CTAG | 5 cut(s) | 117, 177, 248, 402, 1485 |
| MaeII | ACGT | 2 cut(s) | 1209, 1602 |
| MaeIII | GTNAC | 4 cut(s) | 39, 1077, 1378, 1528 |
| MalI | GATC | 7 cut(s) | 268, 545, 759, 971, 1119, 1462, 1545 |
| MboI | GATC | 7 cut(s) | 266, 543, 757, 969, 1117, 1460, 1543 |
| MboII | GAAGA | 9 cut(s) | 424, 509, 590, 809, 881, 979, 1139, 1364, 1483 |
| MfeI | CAATTG | 1 cut(s) | 1566 |
| MhlI | GDGCHC | 3 cut(s) | 640, 804, 1497 |
| MluCI | AATT | 8 cut(s) | 258, 354, 599, 1005, 1125, 1384, 1412, 1566 |
| MlyI | GAGTC | 2 cut(s) | 1041, 1625 |
| MmeI | TCCRAC | 2 cut(s) | 532, 1438 |
| Mph1103I | ATGCAT | 1 cut(s) | 494 |
| MroXI | GAANNNNTTC | 1 cut(s) | 699 |
| MseI | TTAA | 6 cut(s) | 603, 1113, 1128, 1218, 1343, 1428 |
| MslI | CAYNNNNRTG | 1 cut(s) | 147 |
| MspA1I | CMGCKG | 1 cut(s) | 1315 |
| MspI | CCGG | 1 cut(s) | 1491 |
| MspR9I | CCNGG | 3 cut(s) | 223, 438, 1492 |
| MunI | CAATTG | 1 cut(s) | 1566 |
| Mva1269I | GAATGC | 4 cut(s) | 52, 494, 1446, 1589 |
| MvaI | CCWGG | 2 cut(s) | 223, 438 |
| NciI | CCSGG | 1 cut(s) | 1492 |
| NdeII | GATC | 7 cut(s) | 266, 543, 757, 969, 1117, 1460, 1543 |
| NlaIII | CATG | 9 cut(s) | 104, 294, 385, 496, 890, 1038, 1054, 1179, 1525 |
| NlaIV | GGNNCC | 5 cut(s) | 535, 631, 810, 1158, 1495 |
| NmeAIII | GCCGAG | 2 cut(s) | 1324, 1492 |
| NmuCI | GTSAC | 1 cut(s) | 1378 |
| NsiI | ATGCAT | 1 cut(s) | 494 |
| NspI | RCATGY | 2 cut(s) | 1038, 1525 |
| PaqCI | CACCTGC | 1 cut(s) | 931 |
| PceI | AGGCCT | 1 cut(s) | 336 |
| PciI | ACATGT | 1 cut(s) | 1521 |
| PciSI | GCTCTTC | 2 cut(s) | 792, 1152 |
| PctI | GAATGC | 4 cut(s) | 52, 494, 1446, 1589 |
| PdmI | GAANNNNTTC | 1 cut(s) | 699 |
| PfeI | GAWTC | 2 cut(s) | 517, 1609 |
| PkrI | GCNGC | 7 cut(s) | 646, 742, 919, 928, 1135, 1138, 1314 |
| PleI | GAGTC | 2 cut(s) | 1041, 1624 |
| PpsI | GAGTC | 2 cut(s) | 1041, 1624 |
| PpuMI | RGGWCCY | 1 cut(s) | 836 |
| PscI | ACATGT | 1 cut(s) | 1521 |
| PshBI | ATTAAT | 1 cut(s) | 1218 |
| Psp5II | RGGWCCY | 1 cut(s) | 836 |
| Psp6I | CCWGG | 2 cut(s) | 221, 436 |
| PspGI | CCWGG | 2 cut(s) | 221, 436 |
| PspN4I | GGNNCC | 5 cut(s) | 535, 631, 810, 1158, 1495 |
| PspOMI | GGGCCC | 1 cut(s) | 1493 |
| PspPI | GGNCC | 5 cut(s) | 836, 1318, 1394, 1493, 1494 |
| PspPPI | RGGWCCY | 1 cut(s) | 836 |
| PstI | CTGCAG | 2 cut(s) | 646, 928 |
| PstNI | CAGNNNCTG | 2 cut(s) | 839, 923 |
| PvuII | CAGCTG | 1 cut(s) | 1315 |
| RsaI | GTAC | 3 cut(s) | 214, 1254, 1482 |
| RsaNI | GTAC | 3 cut(s) | 213, 1253, 1481 |
| RseI | CAYNNNNRTG | 1 cut(s) | 147 |
| SapI | GCTCTTC | 2 cut(s) | 792, 1152 |
| SaqAI | TTAA | 6 cut(s) | 603, 1113, 1128, 1218, 1343, 1428 |
| SatI | GCNGC | 7 cut(s) | 645, 741, 918, 927, 1134, 1137, 1313 |
| Sau3AI | GATC | 7 cut(s) | 266, 543, 757, 969, 1117, 1460, 1543 |
| Sau96I | GGNCC | 5 cut(s) | 836, 1318, 1394, 1493, 1494 |
| SchI | GAGTC | 2 cut(s) | 1041, 1625 |
| ScrFI | CCNGG | 3 cut(s) | 223, 438, 1492 |
| SduI | GDGCHC | 3 cut(s) | 640, 804, 1497 |
| SfaNI | GCATC | 7 cut(s) | 20, 319, 351, 632, 1097, 1258, 1413 |
| SfcI | CTRYAG | 3 cut(s) | 474, 642, 924 |
| SinI | GGWCC | 2 cut(s) | 836, 1394 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 147 |
| SmlI | CTYRAG | 1 cut(s) | 817 |
| SmoI | CTYRAG | 1 cut(s) | 817 |
| Sse9I | AATT | 8 cut(s) | 258, 354, 599, 1005, 1125, 1384, 1412, 1566 |
| SseBI | AGGCCT | 1 cut(s) | 336 |
| SsiI | CCGC | 4 cut(s) | 171, 1102, 1195, 1574 |
| SspI | AATATT | 1 cut(s) | 397 |
| SspMI | CTAG | 5 cut(s) | 117, 177, 248, 402, 1485 |
| StuI | AGGCCT | 1 cut(s) | 336 |
| StyD4I | CCNGG | 3 cut(s) | 221, 436, 1490 |
| StyI | CCWWGG | 1 cut(s) | 538 |
| TaaI | ACNGT | 7 cut(s) | 146, 306, 478, 574, 1027, 1248, 1378 |
| TaiI | ACGT | 2 cut(s) | 1212, 1605 |
| TaqI | TCGA | 1 cut(s) | 1557 |
| TasI | AATT | 8 cut(s) | 258, 354, 599, 1005, 1125, 1384, 1412, 1566 |
| TfiI | GAWTC | 2 cut(s) | 517, 1609 |
| Tru1I | TTAA | 6 cut(s) | 603, 1113, 1128, 1218, 1343, 1428 |
| Tru9I | TTAA | 6 cut(s) | 603, 1113, 1128, 1218, 1343, 1428 |
| TscAI | CASTG | 4 cut(s) | 210, 483, 640, 733 |
| TseFI | GTSAC | 1 cut(s) | 1378 |
| TseI | GCWGC | 7 cut(s) | 644, 740, 917, 926, 1133, 1136, 1312 |
| Tsp45I | GTSAC | 1 cut(s) | 1378 |
| TspDTI | ATGAA | 3 cut(s) | 125, 279, 1164 |
| TspGWI | ACGGA | 3 cut(s) | 58, 979, 1250 |
| TspRI | CASTG | 4 cut(s) | 210, 483, 640, 733 |
| VpaK11BI | GGWCC | 2 cut(s) | 836, 1394 |
| VspI | ATTAAT | 1 cut(s) | 1218 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1440 |
| XapI | RAATTY | 2 cut(s) | 599, 1384 |
| XceI | RCATGY | 2 cut(s) | 1038, 1525 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 682 |
| XmnI | GAANNNNTTC | 1 cut(s) | 699 |
| XspI | CTAG | 5 cut(s) | 117, 177, 248, 402, 1485 |
| Zsp2I | ATGCAT | 1 cut(s) | 494 |