Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008604

Physical Location & Seq

Genomic Coordinates Reverse (-)

17163042 .. 17167621

Gene Structure 4580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2115 bp

ATGGCTTCATACCGGCCATTCCCACCCCAATCATCGTTCGCGCCACCACCAAATCAAAACCCTCTACCGCCAGCACCGCCGCTACCGCAACAGCGAGGCAATCAGTATAACCAGAATTGGGGATATAATGCTAGTAGTGGTGGTTCTGGTGGCAGCGATGGGGCTGTTCCGGCGGCTCCTTCTTCGTATCCACCAAATTACAATTACCAGCATAGTAGTTATGCCCCTCCAAGAACTCAACACCCTCGTCCACCACCACAATACAACTATCAACCACCGCCTCCACCACCACCCGAGTCTTCATACCCACCACCACCGCCCCCTCAAGCTCCTCCAGTGGGGCAAAGTAATATGCCATTACAGCCTCCGCAAGCCCCCATGTACTACCAGAATTCTCAGTATAGTCACCAGTCAATCCAGCAGCCACCACCTCCGCCCCCACCACCTTTGTCCCCGAATTCTTCGGTACCACCGCCGCCACCTCCCCCTGGTTCACCTCCACCACCGCCTCCTCAAAGTAAGGATAGTGGGGTAGATAGGGGATCCCATGACAAAGGGGCTTCCAGAGAGGCATCACTTTCTGGGAGGCGTGAACGTGGGTATATGAATCATGGGGTTCCTGAAAAACAGCAGAAGCCCCCTGTTCCTTCAGTGCCAGCAAAAAAAGCAAATGGGCCGCCAGGGAGAGTGGAAACAGAGGAAGAGAGGAGATTAAGGAAGAAGAGAGAGTTTGAGAAACAAAGGCAAGAAGAGAAGCATAGGCAGCAGCTGAAGGATTCCCAAAACTCAGTTTTGCAGAAGACGCATATGTTGTCTTCTGGGAAGGGACATGGTTCCATTGTTGGGTCGCGAATGGGGGAAAGGAGAGCTACTCCATTTTTGAGTGGTGAGAGGACTGAAAATAGGCTAAAGAAGCCAACGACATTTGTATGCAAGTTGAAATTCAGGAATGAACTTCCAGATCCTAGTGCACAGCCAAAGCTTATGTCATTGAAGAAAGAGAAAGATCAATATACAAAATACACAATAACATCGTTGGAGAAAACATACAAGCCCAAGCTTTTCGTTGAGCCAGATCTTGGGATTCCTCTTGACCTACTCGACCTCAGTGTATACAATCCTCCTCCTCCAAGTGTTAGACTACCCCTTGCTTTGGAAGATGAGGAATTATTGCGGGATGATGTAGCAGTGACACCTGTGAAAAAGGATGGCATCAGAAGAAAAGAGCGGCCTACTGATAAAGGGGTTGCATGGCTAGTTAAAACCCAATATATATCTCCTCTTAGCATGGAGTCTGCAAGACAGTCTTTAACTGAAAAACAAGCAAAAGAACTGCGGGAAATGAAGGGTCGCAACATTTTGGAGAACCTCAATGACAGGGAAAGACAAATCAAGGAAATTGAGGCATCATTTGAGGCCTGCAAGTCACGACCTGTTCATGCAACCAACAAGAACTTATACGCTGAAGAGGTTCTACCTCTGTTGCCTGATTTTGACCGGTATGACGACCAATTTGTCCTTGCAGCATTTGATGGTGCTCCTACTGCTGATTCAGAAATCTACAGCAAGTTGGACCTGTCGGTTCATGATGCCTATGAATCAAGAGCCATAATGAAAAGTTATAAGGTAACAGGTGTAGATCCAGCTAATCCTGAGAAATTTTTGGCTTACATGGTCCCTTCACCGAATGAGCTATCAAAAGATCCCTATGATGAATCTGAAGATGTTTCATATTCTTGGGTTCGCGAGTATCATTACGATGTAAGAGGTGATGATGTCCACGATCCCACAACGTACCTTGTTTCCTTTGATGATGATGAAGCACGCTATGCGCCCCTTCCCACAAAGCTTGTTTTAAGAAAAAAGAGATCCAAAGAGGGAAAAACCAGTGATGAAGTTGAGCATTTTCCTGCACCTGCAAGAGTGACGGTTAGGCGGAGACCAACTGTTGCGTCAATTGAACTAAAGGATGCAGGGGATTATTCAAGGGGATCTGTATCAAAATTGAGAACAAGAGGCTATGATGTTGAAGATACCCTTGAAAGGCCACAAAAGATTGCACGGCACCAAGATATGGATGAATATAGTGGTGGTGACGATGATTTATCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009909 GO:0009910 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0019538 GO:0030880 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051276 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

Paf1

Protein Analysis

705

Amino Acids

79.02

Weight (kDa)

8.33

Isoelectric Point (pI)

68.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Paf1	PF03985	309 - 632	6.1e-52	Paf1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79730
fragaria_vesca	FvH4_6g32381 FvH4_6g32381
malus_domestica	MD09G1202900.v1.1 MD17G1184000.v1.1
prunus_persica	Prupe.1G178600_v2.0.a1 Prupe.1G178600_v2.0.a1 Prupe.1G178600_v2.0.a1 Prupe.1G178600_v2.0.a1 Prupe.3G059100_v2.0.a1
pyrus_communis	pycom17g19340
rosa_chinensis	RchiOBHm_Chr2g0140531
rosa_laevigata	RLG00000019875
rosa_multiflora	Rmu_sc0002490.1_g000024
rosa_roxburghii	Rroxscaffold_153G00436660 Rroxscaffold_2G00104720
rosa_rugosa	Rorug02G0363400 Rorug02G0363500
rosa_samantha	Rh2AG414300 Rh2BG424200 Rh2CG400700 Rh2DG434200
rosa_wichuraiana	Rw2G033930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1623
AarI	CACCTGC	1 cut(s)	1924
AasI	GACNNNNNNGTC	1 cut(s)	1514
Acc36I	ACCTGC	1 cut(s)	1924
Acc65I	GGTACC	1 cut(s)	466
AccB1I	GGYRCC	2 cut(s)	466, 2064
AccB7I	CCANNNNNTGG	2 cut(s)	1079, 2074
AccBSI	CCGCTC	1 cut(s)	1228
AccI	GTMKAC	1 cut(s)	1113
AccII	CGCG	3 cut(s)	41, 850, 1746
AclWI	GGATC	8 cut(s)	537, 550, 956, 1634, 1697, 1778, 1863, 1999
AcoI	YGGCCR	1 cut(s)	14
AcsI	RAATTY	4 cut(s)	391, 457, 941, 1658
AcuI	CTGAAG	4 cut(s)	633, 791, 1485, 1740
AfaI	GTAC	3 cut(s)	383, 468, 1796
AfiI	CCNNNNNNNGG	8 cut(s)	118, 338, 488, 843, 1079, 1153, 2043, 2074
AgeI	ACCGGT	1 cut(s)	1497
AgsI	TTSAA	6 cut(s)	940, 994, 1961, 1986, 2030, 2042
AjnI	CCWGG	2 cut(s)	487, 679
AluBI	AGCT	8 cut(s)	329, 769, 869, 982, 1060, 1646, 1693, 1849
AluI	AGCT	8 cut(s)	329, 769, 869, 982, 1060, 1646, 1693, 1849
Alw21I	GWGCWC	2 cut(s)	973, 1540
Alw26I	GTCTC	1 cut(s)	1933
Alw44I	GTGCAC	1 cut(s)	969
AlwI	GGATC	8 cut(s)	537, 550, 956, 1634, 1697, 1778, 1863, 1999
AlwNI	CAGNNNCTG	1 cut(s)	769
Ama87I	CYCGRG	1 cut(s)	293
AoxI	GGCC	5 cut(s)	14, 674, 1229, 1416, 2045
ApaLI	GTGCAC	1 cut(s)	969
ApeKI	GCWGC	5 cut(s)	153, 421, 763, 766, 1523
ApoI	RAATTY	4 cut(s)	391, 457, 941, 1658
ArsI	GACNNNNNNTTYG	4 cut(s)	971, 1003, 1496, 1528
AsiGI	ACCGGT	1 cut(s)	1497
Asp700I	GAANNNNTTC	1 cut(s)	1470
Asp718I	GGTACC	1 cut(s)	466
AspLEI	GCGC	2 cut(s)	43, 1834
AspS9I	GGNCC	3 cut(s)	674, 1573, 1675
AsuHPI	GGTGA	6 cut(s)	398, 486, 899, 1674, 1781, 2105
AvaI	CYCGRG	1 cut(s)	293
AvaII	GGWCC	2 cut(s)	1573, 1675
BaeGI	GKGCMC	1 cut(s)	973
BamHI	GGATCC	1 cut(s)	542
BanI	GGYRCC	2 cut(s)	466, 2064
BarI	GAAGNNNNNNTAC	2 cut(s)	1458, 1490
BbsI	GAAGAC	3 cut(s)	291, 806, 807
Bbv12I	GWGCWC	2 cut(s)	973, 1540
BbvI	GCAGC	5 cut(s)	165, 433, 775, 778, 1535
BccI	CCATC	3 cut(s)	152, 1202, 1526
BceAI	ACGGC	1 cut(s)	2078
BciT130I	CCWGG	2 cut(s)	489, 681
BciVI	GTATCC	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	1933
BfaI	CTAG	3 cut(s)	132, 966, 1256
BfmI	CTRYAG	1 cut(s)	1561
BfuAI	ACCTGC	1 cut(s)	1924
BfuI	GTATCC	1 cut(s)	198
BglII	AGATCT	1 cut(s)	1075
Bme1390I	CCNGG	2 cut(s)	489, 681
Bme18I	GGWCC	2 cut(s)	1573, 1675
BmeT110I	CYCGRG	1 cut(s)	293
BmgT120I	GGNCC	3 cut(s)	674, 1573, 1675
BmiI	GGNNCC	7 cut(s)	177, 468, 544, 618, 835, 1677, 2066
BmrFI	CCNGG	2 cut(s)	489, 681
BmsI	GCATC	5 cut(s)	581, 1221, 1415, 1579, 1960
BpiI	GAAGAC	3 cut(s)	291, 806, 807
BplI	GAGNNNNNCTC	2 cut(s)	856, 888
BpmI	CTGGAG	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	309
BsaBI	GATNNNNATC	1 cut(s)	1996
BsaI	GGTCTC	1 cut(s)	1933
BsaJI	CCNNGG	2 cut(s)	487, 680
BsaWI	WCCGGW	1 cut(s)	1497
Bsc4I	CCNNNNNNNGG	8 cut(s)	118, 338, 488, 843, 1079, 1153, 2043, 2074
Bse118I	RCCGGY	2 cut(s)	12, 1497
Bse1I	ACTGG	3 cut(s)	335, 409, 1887
Bse8I	GATNNNNATC	1 cut(s)	1996
BseBI	CCWGG	2 cut(s)	489, 681
BseDI	CCNNGG	2 cut(s)	487, 680
BseGI	GGATG	4 cut(s)	1183, 1213, 1975, 2083
BseJI	GATNNNNATC	1 cut(s)	1996
BseLI	CCNNNNNNNGG	8 cut(s)	118, 338, 488, 843, 1079, 1153, 2043, 2074
BseMII	CTCAG	4 cut(s)	410, 801, 1120, 1644
BseNI	ACTGG	3 cut(s)	335, 409, 1887
BseRI	GAGGAG	6 cut(s)	321, 501, 721, 1113, 1116, 1269
BseSI	GKGCMC	1 cut(s)	973
BseXI	GCAGC	5 cut(s)	165, 433, 775, 778, 1535
BsgI	GTGCAG	1 cut(s)	1896
Bsh1236I	CGCG	3 cut(s)	41, 850, 1746
BshFI	GGCC	5 cut(s)	16, 676, 1231, 1418, 2047
BshNI	GGYRCC	2 cut(s)	466, 2064
BshTI	ACCGGT	1 cut(s)	1497
BsiHKAI	GWGCWC	2 cut(s)	973, 1540
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	3 cut(s)	13, 170, 1498
BslFI	GGGAC	3 cut(s)	436, 840, 1661
BslI	CCNNNNNNNGG	8 cut(s)	118, 338, 488, 843, 1079, 1153, 2043, 2074
BsmAI	GTCTC	1 cut(s)	1933
BsmFI	GGGAC	3 cut(s)	436, 840, 1661
BsnI	GGCC	5 cut(s)	16, 676, 1231, 1418, 2047
Bso31I	GGTCTC	1 cut(s)	1933
BsoBI	CYCGRG	1 cut(s)	293
Bsp1286I	GDGCHC	2 cut(s)	973, 1540
Bsp143I	GATC	9 cut(s)	542, 961, 1006, 1075, 1639, 1702, 1783, 1868, 1991
Bsp68I	TCGCGA	2 cut(s)	850, 1746
BspANI	GGCC	5 cut(s)	16, 676, 1231, 1418, 2047
BspCNI	CTCAG	4 cut(s)	409, 800, 1119, 1645
BspFNI	CGCG	3 cut(s)	41, 850, 1746
BspHI	TCATGA	1 cut(s)	1585
BspLI	GGNNCC	7 cut(s)	177, 468, 544, 618, 835, 1677, 2066
BspMI	ACCTGC	1 cut(s)	1924
BspPI	GGATC	8 cut(s)	537, 550, 956, 1634, 1697, 1778, 1863, 1999
BspT107I	GGYRCC	2 cut(s)	466, 2064
BspTNI	GGTCTC	1 cut(s)	1933
BsrBI	CCGCTC	1 cut(s)	1228
BsrFI	RCCGGY	2 cut(s)	12, 1497
BsrI	ACTGG	3 cut(s)	335, 409, 1887
BssAI	RCCGGY	2 cut(s)	12, 1497
BssECI	CCNNGG	2 cut(s)	487, 680
BssMI	GATC	9 cut(s)	542, 961, 1006, 1075, 1639, 1702, 1783, 1868, 1991
BssNAI	GTATAC	1 cut(s)	1114
Bst1107I	GTATAC	1 cut(s)	1114
Bst2UI	CCWGG	2 cut(s)	489, 681
Bst4CI	ACNGT	3 cut(s)	1305, 1930, 1948
Bst6I	CTCTTC	4 cut(s)	696, 716, 744, 1461
BstAPI	GCANNNNNTGC	1 cut(s)	1829
BstC8I	GCNNGC	5 cut(s)	72, 372, 657, 1420, 1825
BstDEI	CTNAG	5 cut(s)	396, 787, 1106, 1283, 1653
BstF5I	GGATG	4 cut(s)	1183, 1213, 1975, 2083
BstFNI	CGCG	3 cut(s)	41, 850, 1746
BstHHI	GCGC	2 cut(s)	43, 1834
BstKTI	GATC	9 cut(s)	545, 964, 1009, 1078, 1642, 1705, 1786, 1871, 1994
BstMAI	GTCTC	1 cut(s)	1933
BstMBI	GATC	9 cut(s)	542, 961, 1006, 1075, 1639, 1702, 1783, 1868, 1991
BstNI	CCWGG	2 cut(s)	489, 681
BstSCI	CCNGG	2 cut(s)	487, 679
BstSFI	CTRYAG	1 cut(s)	1561
BstSLI	GKGCMC	1 cut(s)	973
BstUI	CGCG	3 cut(s)	41, 850, 1746
BstV1I	GCAGC	5 cut(s)	165, 433, 775, 778, 1535
BstV2I	GAAGAC	3 cut(s)	291, 806, 807
BstX2I	RGATCY	7 cut(s)	542, 961, 1075, 1639, 1702, 1868, 1991
BstYI	RGATCY	7 cut(s)	542, 961, 1075, 1639, 1702, 1868, 1991
BstZ17I	GTATAC	1 cut(s)	1114
BsuI	GTATCC	1 cut(s)	198
BsuRI	GGCC	5 cut(s)	16, 676, 1231, 1418, 2047
BtgZI	GCGATG	1 cut(s)	171
BtsCI	GGATG	4 cut(s)	1183, 1213, 1975, 2083
BtsI	GCAGTG	1 cut(s)	1194
BtsIMutI	CAGTG	5 cut(s)	342, 657, 1114, 1194, 1894
BtuMI	TCGCGA	2 cut(s)	850, 1746
BveI	ACCTGC	1 cut(s)	1924
Cac8I	GCNNGC	5 cut(s)	72, 372, 657, 1420, 1825
CaiI	CAGNNNCTG	1 cut(s)	769
CciI	TCATGA	1 cut(s)	1585
CfoI	GCGC	2 cut(s)	43, 1834
Cfr10I	RCCGGY	2 cut(s)	12, 1497
Cfr13I	GGNCC	3 cut(s)	674, 1573, 1675
CseI	GACGC	2 cut(s)	811, 1941
Csp6I	GTAC	3 cut(s)	382, 467, 1795
CspAI	ACCGGT	1 cut(s)	1497
CspCI	CAANNNNNGTGG	4 cut(s)	429, 464, 1831, 1866
CviAII	CATG	9 cut(s)	379, 548, 611, 830, 1251, 1288, 1439, 1586, 1672
CviQI	GTAC	3 cut(s)	382, 467, 1795
DdeI	CTNAG	5 cut(s)	396, 787, 1106, 1283, 1653
DpnI	GATC	9 cut(s)	544, 963, 1008, 1077, 1641, 1704, 1785, 1870, 1993
DpnII	GATC	9 cut(s)	542, 961, 1006, 1075, 1639, 1702, 1783, 1868, 1991
DrdI	GACNNNNNNGTC	1 cut(s)	1514
DseDI	GACNNNNNNGTC	1 cut(s)	1514
EaeI	YGGCCR	1 cut(s)	14
Eam1104I	CTCTTC	4 cut(s)	696, 716, 744, 1461
EarI	CTCTTC	4 cut(s)	696, 716, 744, 1461
EciI	GGCGGA	2 cut(s)	423, 1951
Eco147I	AGGCCT	1 cut(s)	1418
Eco31I	GGTCTC	1 cut(s)	1933
Eco47I	GGWCC	2 cut(s)	1573, 1675
Eco57I	CTGAAG	4 cut(s)	633, 791, 1485, 1740
Eco88I	CYCGRG	1 cut(s)	293
EcoRI	GAATTC	2 cut(s)	391, 457
EcoRII	CCWGG	2 cut(s)	487, 679
FaeI	CATG	9 cut(s)	382, 551, 614, 833, 1254, 1291, 1442, 1589, 1675
FalI	AAGNNNNNCTT	4 cut(s)	1291, 1323, 2022, 2054
FaqI	GGGAC	3 cut(s)	436, 840, 1661
FatI	CATG	9 cut(s)	378, 547, 610, 829, 1250, 1287, 1438, 1585, 1671
FauI	CCCGC	2 cut(s)	1167, 1329
FauNDI	CATATG	1 cut(s)	807
FblI	GTMKAC	1 cut(s)	1113
FokI	GGATG	4 cut(s)	1190, 1220, 1982, 2090
FspBI	CTAG	3 cut(s)	132, 966, 1256
GlaI	GCGC	2 cut(s)	42, 1833
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	5 cut(s)	16, 676, 1231, 1418, 2047
HapII	CCGG	3 cut(s)	13, 170, 1498
HgaI	GACGC	2 cut(s)	811, 1941
HhaI	GCGC	2 cut(s)	43, 1834
Hin1II	CATG	9 cut(s)	382, 551, 614, 833, 1254, 1291, 1442, 1589, 1675
Hin6I	GCGC	2 cut(s)	41, 1832
HinP1I	GCGC	2 cut(s)	41, 1832
HindIII	AAGCTT	3 cut(s)	980, 1058, 1847
HinfI	GANTC	8 cut(s)	296, 607, 776, 1084, 1292, 1550, 1598, 1715
HpaII	CCGG	3 cut(s)	13, 170, 1498
HphI	GGTGA	6 cut(s)	398, 486, 899, 1674, 1781, 2105
Hpy166II	GTNNAC	6 cut(s)	251, 494, 593, 971, 1114, 1780
Hpy188I	TCNGA	4 cut(s)	1217, 1555, 1720, 2110
Hpy8I	GTNNAC	6 cut(s)	251, 494, 593, 971, 1114, 1780
HpyAV	CCTTC	7 cut(s)	189, 657, 766, 817, 1339, 1689, 1847
HpyCH4III	ACNGT	3 cut(s)	1305, 1930, 1948
HpyCH4IV	ACGT	2 cut(s)	595, 1793
HpyF3I	CTNAG	5 cut(s)	396, 787, 1106, 1283, 1653
HpySE526I	ACGT	2 cut(s)	595, 1793
Hsp92II	CATG	9 cut(s)	382, 551, 614, 833, 1254, 1291, 1442, 1589, 1675
HspAI	GCGC	2 cut(s)	41, 1832
KpnI	GGTACC	1 cut(s)	470
Kzo9I	GATC	9 cut(s)	542, 961, 1006, 1075, 1639, 1702, 1783, 1868, 1991
LmnI	GCTCC	3 cut(s)	181, 334, 1543
Lsp1109I	GCAGC	5 cut(s)	165, 433, 775, 778, 1535
LweI	GCATC	5 cut(s)	581, 1221, 1415, 1579, 1960
MaeI	CTAG	3 cut(s)	132, 966, 1256
MaeII	ACGT	2 cut(s)	595, 1793
MaeIII	GTNAC	6 cut(s)	404, 1189, 1425, 1627, 1924, 2093
MalI	GATC	9 cut(s)	544, 963, 1008, 1077, 1641, 1704, 1785, 1870, 1993
MbiI	CCGCTC	1 cut(s)	1228
MboI	GATC	9 cut(s)	542, 961, 1006, 1075, 1639, 1702, 1783, 1868, 1991
MfeI	CAATTG	1 cut(s)	1956
MflI	RGATCY	7 cut(s)	542, 961, 1075, 1639, 1702, 1868, 1991
MhlI	GDGCHC	2 cut(s)	973, 1540
MlyI	GAGTC	2 cut(s)	305, 1301
MmeI	TCCRAC	2 cut(s)	1017, 1551
MroXI	GAANNNNTTC	1 cut(s)	1470
MseI	TTAA	5 cut(s)	713, 1260, 1310, 1856, 2113
MslI	CAYNNNNRTG	2 cut(s)	928, 1758
MspA1I	CMGCKG	1 cut(s)	769
MspI	CCGG	3 cut(s)	13, 170, 1498
MspR9I	CCNGG	2 cut(s)	489, 681
MunI	CAATTG	1 cut(s)	1956
MvaI	CCWGG	2 cut(s)	489, 681
MvnI	CGCG	3 cut(s)	41, 850, 1746
NdeI	CATATG	1 cut(s)	807
NdeII	GATC	9 cut(s)	542, 961, 1006, 1075, 1639, 1702, 1783, 1868, 1991
NlaIII	CATG	9 cut(s)	382, 551, 614, 833, 1254, 1291, 1442, 1589, 1675
NlaIV	GGNNCC	7 cut(s)	177, 468, 544, 618, 835, 1677, 2066
NmuCI	GTSAC	5 cut(s)	404, 1189, 1425, 1924, 2093
NruI	TCGCGA	2 cut(s)	850, 1746
PagI	TCATGA	1 cut(s)	1585
PaqCI	CACCTGC	1 cut(s)	1924
PceI	AGGCCT	1 cut(s)	1418
PdmI	GAANNNNTTC	1 cut(s)	1470
PfeI	GAWTC	6 cut(s)	607, 776, 1084, 1550, 1598, 1715
PflMI	CCANNNNNTGG	2 cut(s)	1079, 2074
PinAI	ACCGGT	1 cut(s)	1497
PleI	GAGTC	2 cut(s)	304, 1300
PpsI	GAGTC	2 cut(s)	304, 1300
PsiI	TTATAA	1 cut(s)	1623
Psp6I	CCWGG	2 cut(s)	487, 679
PspGI	CCWGG	2 cut(s)	487, 679
PspN4I	GGNNCC	7 cut(s)	177, 468, 544, 618, 835, 1677, 2066
PspPI	GGNCC	3 cut(s)	674, 1573, 1675
PsrI	GAACNNNNNNTAC	2 cut(s)	127, 159
PstNI	CAGNNNCTG	1 cut(s)	769
PsuI	RGATCY	7 cut(s)	542, 961, 1075, 1639, 1702, 1868, 1991
PvuII	CAGCTG	1 cut(s)	769
RruI	TCGCGA	2 cut(s)	850, 1746
RsaI	GTAC	3 cut(s)	383, 468, 1796
RsaNI	GTAC	3 cut(s)	382, 467, 1795
RseI	CAYNNNNRTG	2 cut(s)	928, 1758
SaqAI	TTAA	5 cut(s)	713, 1260, 1310, 1856, 2113
Sau3AI	GATC	9 cut(s)	542, 961, 1006, 1075, 1639, 1702, 1783, 1868, 1991
Sau96I	GGNCC	3 cut(s)	674, 1573, 1675
SchI	GAGTC	2 cut(s)	305, 1301
ScrFI	CCNGG	2 cut(s)	489, 681
SduI	GDGCHC	2 cut(s)	973, 1540
SfaNI	GCATC	5 cut(s)	581, 1221, 1415, 1579, 1960
SfcI	CTRYAG	1 cut(s)	1561
SinI	GGWCC	2 cut(s)	1573, 1675
SmiMI	CAYNNNNRTG	2 cut(s)	928, 1758
SmlI	CTYRAG	1 cut(s)	324
SmoI	CTYRAG	1 cut(s)	324
SseBI	AGGCCT	1 cut(s)	1418
SspMI	CTAG	3 cut(s)	132, 966, 1256
StuI	AGGCCT	1 cut(s)	1418
StyD4I	CCNGG	2 cut(s)	487, 679
TaaI	ACNGT	3 cut(s)	1305, 1930, 1948
TaiI	ACGT	2 cut(s)	598, 1796
TaqI	TCGA	1 cut(s)	1101
TatI	WGTACW	1 cut(s)	381
TauI	GCSGC	5 cut(s)	82, 176, 478, 679, 1231
TfiI	GAWTC	6 cut(s)	607, 776, 1084, 1550, 1598, 1715
Tru1I	TTAA	5 cut(s)	713, 1260, 1310, 1856, 2113
Tru9I	TTAA	5 cut(s)	713, 1260, 1310, 1856, 2113
TscAI	CASTG	5 cut(s)	342, 657, 1114, 1194, 1894
TseFI	GTSAC	5 cut(s)	404, 1189, 1425, 1924, 2093
TseI	GCWGC	5 cut(s)	153, 421, 763, 766, 1523
Tsp45I	GTSAC	5 cut(s)	404, 1189, 1425, 1924, 2093
TspRI	CASTG	5 cut(s)	342, 657, 1114, 1194, 1894
Van91I	CCANNNNNTGG	2 cut(s)	1079, 2074
VneI	GTGCAC	1 cut(s)	969
VpaK11BI	GGWCC	2 cut(s)	1573, 1675
XapI	RAATTY	4 cut(s)	391, 457, 941, 1658
XmiI	GTMKAC	1 cut(s)	1113
XmnI	GAANNNNTTC	1 cut(s)	1470
XspI	CTAG	3 cut(s)	132, 966, 1256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.