pycom17g19490

Avr9 Cf-9 rapidly elicited protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0012844
Physical Location & Seq
Reverse (-)
17383686 .. 17384300
615 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 615 bp
ATGGAACAAAATAATCTACCAGTAATTGCCAGAAGAATATGGAGTATAGTACGTGTAGCTTTCTTCATGCTAAAAAAGGGAATTTCAAAGCGAAAGCTCCTACTCGACCTCAACATGATGATGAAGCGTGGCAAACTTGCCAGCAAAGCCCTAAGCAACCTCATGTTCCACCACCATCACCACAACCACAACCACCCCCACTACAGCAGCACCACCTCTTCTGCCGCCCCACGAGAGTATGAGTTCAGCTGCAGCAACACCCCGAACTACCCTTTTCACCTCATGGGCAAGCGCCGCCACCACAGTAATCACAACAACTTCTTCACGTGTGCTCACGCACCGCTAACTCAGGATGATGAGATGGCGACCGCAGGTGCCGTCAAGGCGGTTTTGGAGATGTTGAATAATGAATCGTGGGCTGTGGAGACGGTGGCATCCGTGGCAGCATCACCAGTGCTTCCCGGGTTCGGAAAGAGCCCTATGGTCCGCCAGCTGAGGATAACGGACTCACCGTTTCCGTTGAGGGAGGCTGACGAGGACAACCACGTAGATAAAGCGGCGGAGGAGTTTATAGAGAAGTTTTATAAGAATTTGTGGCAGCAGAGGAGAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

205

Amino Acids

23.48

Weight (kDa)

9.54

Isoelectric Point (pI)

53.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012844)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52140 AT3G16330
fragaria_vesca FvH4_6g32270
malus_domestica MD09G1205200.v1.1 MD17G1185000.v1.1
prunus_persica Prupe.3G060500_v2.0.a1
pyrus_communis pycom09g12180 pycom17g19490
rosa_chinensis RchiOBHm_Chr2g0140151
rosa_laevigata RLG00000019856
rosa_multiflora Rmu_sc0003244.1_g000017
rosa_roxburghii Rroxscaffold_2G00105000
rosa_rugosa Rorug02G0361400
rosa_samantha Rh2AG412200 Rh2BG422600 Rh2CG398300 Rh2DG431900
rosa_wichuraiana Rw2G033780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 585
AarI CACCTGC 1 cut(s) 362
Acc36I ACCTGC 1 cut(s) 362
AccB1I GGYRCC 1 cut(s) 374
AciI CCGC 8 cut(s) 225, 295, 341, 369, 386, 487, 557, 560
AcsI RAATTY 2 cut(s) 81, 589
AcvI CACGTG 1 cut(s) 327
AfaI GTAC 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 467
AflIII ACRYGT 2 cut(s) 52, 326
AgsI TTSAA 2 cut(s) 87, 403
AluBI AGCT 4 cut(s) 59, 97, 249, 493
AluI AGCT 4 cut(s) 59, 97, 249, 493
Alw21I GWGCWC 1 cut(s) 334
Alw26I GTCTC 1 cut(s) 419
Ama87I CYCGRG 1 cut(s) 461
ApeKI GCWGC 5 cut(s) 207, 249, 252, 443, 598
ApoI RAATTY 2 cut(s) 81, 589
AspLEI GCGC 1 cut(s) 294
AspS9I GGNCC 1 cut(s) 484
AsuC2I CCSGG 2 cut(s) 462, 463
AsuHPI GGTGA 4 cut(s) 170, 269, 441, 501
AvaI CYCGRG 1 cut(s) 461
AvaII GGWCC 1 cut(s) 484
BanI GGYRCC 1 cut(s) 374
BanII GRGCYC 1 cut(s) 479
BauI CACGAG 1 cut(s) 231
BbrPI CACGTG 1 cut(s) 327
Bbv12I GWGCWC 1 cut(s) 334
BbvCI CCTCAGC 1 cut(s) 494
BbvI GCAGC 5 cut(s) 219, 236, 264, 455, 610
BccI CCATC 2 cut(s) 183, 355
BceAI ACGGC 1 cut(s) 362
BcnI CCSGG 2 cut(s) 462, 463
BcoDI GTCTC 1 cut(s) 419
BfmI CTRYAG 2 cut(s) 202, 250
BfoI RGCGCY 1 cut(s) 295
BfuAI ACCTGC 1 cut(s) 362
BglI GCCNNNNNGGC 1 cut(s) 383
BisI GCNGC 8 cut(s) 208, 225, 250, 253, 295, 444, 558, 599
BlsI GCNGC 8 cut(s) 209, 226, 251, 254, 296, 445, 559, 600
Bme1390I CCNGG 2 cut(s) 462, 463
Bme18I GGWCC 1 cut(s) 484
BmeT110I CYCGRG 1 cut(s) 461
BmgT120I GGNCC 1 cut(s) 484
BmiI GGNNCC 1 cut(s) 376
BmrFI CCNGG 2 cut(s) 462, 463
BmsI GCATC 2 cut(s) 443, 455
Bpu10I CCTNAGC 2 cut(s) 152, 494
BpuMI CCSGG 2 cut(s) 462, 463
BsaAI YACGTR 3 cut(s) 53, 327, 547
BsaJI CCNNGG 2 cut(s) 438, 461
Bsc4I CCNNNNNNNGG 1 cut(s) 467
Bse1I ACTGG 2 cut(s) 20, 452
BseDI CCNNGG 2 cut(s) 438, 461
BseGI GGATG 2 cut(s) 358, 434
BseLI CCNNNNNNNGG 1 cut(s) 467
BseMII CTCAG 2 cut(s) 362, 485
BseNI ACTGG 2 cut(s) 20, 452
BseRI GAGGAG 1 cut(s) 578
BseXI GCAGC 5 cut(s) 219, 236, 264, 455, 610
Bsh1285I CGRYCG 1 cut(s) 369
BshNI GGYRCC 1 cut(s) 374
BsiEI CGRYCG 1 cut(s) 369
BsiHKAI GWGCWC 1 cut(s) 334
BsiHKCI CYCGRG 1 cut(s) 461
BsiSI CCGG 1 cut(s) 462
BslI CCNNNNNNNGG 1 cut(s) 467
BsmAI GTCTC 1 cut(s) 419
BsmBI CGTCTC 1 cut(s) 419
BsoBI CYCGRG 1 cut(s) 461
Bsp1286I GDGCHC 2 cut(s) 334, 479
BspACI CCGC 8 cut(s) 225, 295, 341, 369, 386, 487, 557, 560
BspCNI CTCAG 2 cut(s) 361, 486
BspLI GGNNCC 1 cut(s) 376
BspMAI CTGCAG 1 cut(s) 254
BspMI ACCTGC 1 cut(s) 362
BspT107I GGYRCC 1 cut(s) 374
BsrI ACTGG 2 cut(s) 20, 452
BssECI CCNNGG 2 cut(s) 438, 461
BssSI CACGAG 1 cut(s) 231
Bst2BI CACGAG 1 cut(s) 231
Bst4CI ACNGT 3 cut(s) 305, 430, 513
Bst6I CTCTTC 1 cut(s) 223
BstBAI YACGTR 3 cut(s) 53, 327, 547
BstC8I GCNNGC 3 cut(s) 142, 290, 491
BstDEI CTNAG 3 cut(s) 152, 348, 494
BstDSI CCRYGG 1 cut(s) 438
BstF5I GGATG 2 cut(s) 358, 434
BstH2I RGCGCY 1 cut(s) 295
BstHHI GCGC 1 cut(s) 294
BstMAI GTCTC 1 cut(s) 419
BstMCI CGRYCG 1 cut(s) 369
BstMWI GCNNNNNNNGC 4 cut(s) 146, 294, 383, 440
BstSCI CCNGG 2 cut(s) 460, 461
BstSFI CTRYAG 2 cut(s) 202, 250
BstV1I GCAGC 5 cut(s) 219, 236, 264, 455, 610
BtgI CCRYGG 1 cut(s) 438
BtsCI GGATG 2 cut(s) 358, 434
BtsIMutI CAGTG 1 cut(s) 459
BveI ACCTGC 1 cut(s) 362
Cac8I GCNNGC 3 cut(s) 142, 290, 491
CfoI GCGC 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 484
Cfr9I CCCGGG 1 cut(s) 461
Csp6I GTAC 1 cut(s) 50
CviAII CATG 4 cut(s) 67, 115, 163, 283
CviJI RGCY 8 cut(s) 59, 97, 149, 249, 419, 477, 493, 530
CviKI_1 RGCY 8 cut(s) 59, 97, 149, 249, 419, 477, 493, 530
CviQI GTAC 1 cut(s) 50
DdeI CTNAG 3 cut(s) 152, 348, 494
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
EciI GGCGGA 2 cut(s) 476, 575
Eco24I GRGCYC 1 cut(s) 479
Eco47I GGWCC 1 cut(s) 484
Eco72I CACGTG 1 cut(s) 327
Eco88I CYCGRG 1 cut(s) 461
EcoT38I GRGCYC 1 cut(s) 479
Esp3I CGTCTC 1 cut(s) 419
FaeI CATG 4 cut(s) 70, 118, 166, 286
FatI CATG 4 cut(s) 66, 114, 162, 282
Fnu4HI GCNGC 8 cut(s) 208, 225, 250, 253, 295, 444, 558, 599
FokI GGATG 2 cut(s) 365, 421
FriOI GRGCYC 1 cut(s) 479
Fsp4HI GCNGC 8 cut(s) 208, 225, 250, 253, 295, 444, 558, 599
GlaI GCGC 1 cut(s) 293
GluI GCNGC 8 cut(s) 208, 225, 250, 253, 295, 444, 558, 599
HaeII RGCGCY 1 cut(s) 295
HapII CCGG 1 cut(s) 462
HhaI GCGC 1 cut(s) 294
Hin1II CATG 4 cut(s) 70, 118, 166, 286
Hin6I GCGC 1 cut(s) 292
HinP1I GCGC 1 cut(s) 292
HinfI GANTC 2 cut(s) 410, 506
HpaII CCGG 1 cut(s) 462
HphI GGTGA 4 cut(s) 170, 269, 441, 501
Hpy188I TCNGA 1 cut(s) 470
Hpy188III TCNNGA 1 cut(s) 350
HpyCH4III ACNGT 3 cut(s) 305, 430, 513
HpyCH4IV ACGT 3 cut(s) 52, 326, 546
HpyCH4V TGCA 1 cut(s) 252
HpyF10VI GCNNNNNNNGC 4 cut(s) 146, 294, 383, 440
HpyF3I CTNAG 3 cut(s) 152, 348, 494
HpySE526I ACGT 3 cut(s) 52, 326, 546
Hsp92II CATG 4 cut(s) 70, 118, 166, 286
HspAI GCGC 1 cut(s) 292
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 8 cut(s) 33, 43, 154, 335, 357, 465, 475, 503
Lsp1109I GCAGC 5 cut(s) 219, 236, 264, 455, 610
LweI GCATC 2 cut(s) 443, 455
MaeII ACGT 3 cut(s) 52, 326, 546
MboII GAAGA 4 cut(s) 45, 55, 210, 313
MhlI GDGCHC 2 cut(s) 334, 479
MluCI AATT 3 cut(s) 24, 81, 589
MlyI GAGTC 1 cut(s) 500
MslI CAYNNNNRTG 1 cut(s) 119
MspA1I CMGCKG 2 cut(s) 249, 493
MspI CCGG 1 cut(s) 462
MspR9I CCNGG 2 cut(s) 462, 463
MwoI GCNNNNNNNGC 4 cut(s) 146, 294, 383, 440
NciI CCSGG 2 cut(s) 462, 463
NlaIII CATG 4 cut(s) 70, 118, 166, 286
NlaIV GGNNCC 1 cut(s) 376
PaqCI CACCTGC 1 cut(s) 362
PcsI WCGNNNNNNNCGW 1 cut(s) 509
PfeI GAWTC 1 cut(s) 410
PkrI GCNGC 8 cut(s) 209, 226, 251, 254, 296, 445, 559, 600
PleI GAGTC 1 cut(s) 500
PmaCI CACGTG 1 cut(s) 327
PmlI CACGTG 1 cut(s) 327
PpsI GAGTC 1 cut(s) 500
Ppu21I YACGTR 3 cut(s) 53, 327, 547
PsiI TTATAA 1 cut(s) 585
PspCI CACGTG 1 cut(s) 327
PspN4I GGNNCC 1 cut(s) 376
PspPI GGNCC 1 cut(s) 484
PstI CTGCAG 1 cut(s) 254
PvuII CAGCTG 2 cut(s) 249, 493
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
RseI CAYNNNNRTG 1 cut(s) 119
SatI GCNGC 8 cut(s) 208, 225, 250, 253, 295, 444, 558, 599
Sau96I GGNCC 1 cut(s) 484
SchI GAGTC 1 cut(s) 500
ScrFI CCNGG 2 cut(s) 462, 463
SduI GDGCHC 2 cut(s) 334, 479
SfaNI GCATC 2 cut(s) 443, 455
SfcI CTRYAG 2 cut(s) 202, 250
SinI GGWCC 1 cut(s) 484
SmaI CCCGGG 1 cut(s) 463
SmiMI CAYNNNNRTG 1 cut(s) 119
Sse9I AATT 3 cut(s) 24, 81, 589
SsiI CCGC 8 cut(s) 225, 295, 341, 369, 386, 487, 557, 560
StyD4I CCNGG 2 cut(s) 460, 461
TaaI ACNGT 3 cut(s) 305, 430, 513
TaiI ACGT 3 cut(s) 55, 329, 549
TaqI TCGA 1 cut(s) 105
TasI AATT 3 cut(s) 24, 81, 589
TauI GCSGC 3 cut(s) 227, 297, 560
TfiI GAWTC 1 cut(s) 410
TscAI CASTG 1 cut(s) 459
TseI GCWGC 5 cut(s) 207, 249, 252, 443, 598
TspDTI ATGAA 3 cut(s) 55, 137, 423
TspGWI ACGGA 3 cut(s) 427, 507, 518
TspMI CCCGGG 1 cut(s) 461
TspRI CASTG 1 cut(s) 459
VpaK11BI GGWCC 1 cut(s) 484
XapI RAATTY 2 cut(s) 81, 589
XmaI CCCGGG 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.