Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008032

Physical Location & Seq

Genomic Coordinates Reverse (-)

17704115 .. 17707115

Gene Structure 3001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGTCACTGATGGTAGCATGACCAAAACTCAACCGCCCTTGTACGGAGAGAGAGAGAGAGAGAGAGCCTTGAGAAGAGCACCTACGCATCCACGACTCCGCCGTCCACCCCCAATCTCAAATCAAAACTCCAAATCAATTTCATTCGGTTCGCAATCGCCGAACCCTTCAAAGAAGAAGAAGAAGAAGGAGGGGATTGTTGAATTGTTCAGTCGTTCAATGAGTAGTAGCGGTAGTAGTAATGTTCGACCACCAGCACAAGACGCTTGGCTTCAAGCTTACAAGTCCTTACTTCCTCAGTGGCAATCCATCTCTCACTCCCACCAGTCAATAATCCCAATTTCGATATCTAGAGTTAACCAATTCGATGCGGGAAGGCTGGACATTGAAATGTCAGCCATGTTGAAGGAACAGTTGGTTAAGGTCTTCTCCTTAATGAAGCCAGGAATGCTATTTCAATATGAAGCAGAACTTGATGCTTTCCTCGAATTTCTTATCTGGCGGTTCTCAATTTGGGTGGATAAACCTACCCCAGGAATCGCGCTCATGAATCTGAGGTATAGAGACGAGCGTGCTGTGGAATCAAGAGGAAAAGTCAGAACGGGTTTGGAAGGACCTGGACTTACAGTTGCACAGAAGCTTTGGTATTGTGTTGCTACTGTTGGTGGTCAATACATATGGGCACGTGTGCAATCATTTTCTGCTTTCCGTAGGTGGGGTGATTCTGAACAGAGGTCAGTGGCACGAGGAGCATGGATTCTGATACAACGTATAGAAGGACTTTACAAAGCTGCCTCATTTGGCAACCTGCTTTTATTTCTTTACACAGGAAGGTATAGGAATCTAATTGAAAGAGTTTTAAGAGCTAGGCTGGTCTATGGAAGCCCTAATATGAACAGAGCAGTTAGCTTTGAGTACATGAACCGCCAGTTAGTATGGAATGAATTCTCGGTATGCCCTTCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005911 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0030054 GO:0030258 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0055085 GO:0055114 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0140096 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex2_Pex12 zf-C3HC4

Protein Analysis

323

Amino Acids

36.92

Weight (kDa)

10.27

Isoelectric Point (pI)

47.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pex2_Pex12	PF04757	129 - 317	6.7e-34	Pex2 / Pex12 amino terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79810 AT1G79810
fragaria_vesca	FvH4_6g31910 FvH4_6g31910 FvH4_6g31910
malus_domestica	MD09G1208200.v1.1 MD17G1189500.v1.1
prunus_persica	Prupe.3G064400_v2.0.a1 Prupe.3G064400_v2.0.a1 Prupe.3G064400_v2.0.a1
pyrus_communis	pycom09g12440 pycom17g19750
rosa_chinensis	RchiOBHm_Chr2g0139271
rosa_laevigata	RLG00000019804
rosa_multiflora	Rmu_sc0033759.1_g000001 Rmu_ssc0000068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105490
rosa_rugosa	Rorug02G0356600
rosa_samantha	Rh2AG406400 Rh2BG416800 Rh2CG392600 Rh2DG426000
rosa_wichuraiana	Rw2G032930 Rw2G033200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	102
Acc36I	ACCTGC	1 cut(s)	816
AccII	CGCG	1 cut(s)	542
AciI	CCGC	6 cut(s)	35, 100, 231, 371, 502, 925
AcsI	RAATTY	2 cut(s)	488, 944
AcvI	CACGTG	1 cut(s)	686
AfaI	GTAC	2 cut(s)	44, 917
AfiI	CCNNNNNNNGG	3 cut(s)	44, 533, 715
AflIII	ACRYGT	1 cut(s)	685
AgsI	TTSAA	8 cut(s)	171, 203, 219, 275, 389, 406, 458, 851
AjnI	CCWGG	3 cut(s)	442, 532, 616
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AluBI	AGCT	5 cut(s)	278, 640, 791, 866, 909
AluI	AGCT	5 cut(s)	278, 640, 791, 866, 909
Alw21I	GWGCWC	1 cut(s)	82
Alw26I	GTCTC	1 cut(s)	558
ApeKI	GCWGC	1 cut(s)	791
ApoI	RAATTY	2 cut(s)	488, 944
Asp700I	GAANNNNTTC	1 cut(s)	944
AspLEI	GCGC	1 cut(s)	544
AspS9I	GGNCC	1 cut(s)	614
AsuHPI	GGTGA	1 cut(s)	731
AvaII	GGWCC	1 cut(s)	614
BaeGI	GKGCMC	1 cut(s)	685
BarI	GAAGNNNNNNTAC	2 cut(s)	67, 99
BauI	CACGAG	1 cut(s)	744
BbrPI	CACGTG	1 cut(s)	686
BbsI	GAAGAC	1 cut(s)	418
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	778
BccI	CCATC	2 cut(s)	5, 317
BceAI	ACGGC	1 cut(s)	87
BciT130I	CCWGG	3 cut(s)	444, 534, 618
BcoDI	GTCTC	1 cut(s)	558
BfaI	CTAG	2 cut(s)	351, 867
BfuAI	ACCTGC	1 cut(s)	816
BisI	GCNGC	1 cut(s)	792
BlsI	GCNGC	1 cut(s)	793
Bme1390I	CCNGG	3 cut(s)	444, 534, 618
Bme18I	GGWCC	1 cut(s)	614
BmgT120I	GGNCC	1 cut(s)	614
BmrFI	CCNGG	3 cut(s)	444, 534, 618
BmsI	GCATC	3 cut(s)	97, 358, 466
BpiI	GAAGAC	1 cut(s)	418
BpuEI	CTTGAG	1 cut(s)	91
BsaAI	YACGTR	1 cut(s)	686
BsaJI	CCNNGG	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 533, 715
Bse1I	ACTGG	2 cut(s)	325, 928
BseBI	CCWGG	3 cut(s)	444, 534, 618
BseDI	CCNNGG	1 cut(s)	532
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	3 cut(s)	44, 533, 715
BseMII	CTCAG	2 cut(s)	311, 545
BseNI	ACTGG	2 cut(s)	325, 928
BseRI	GAGGAG	1 cut(s)	762
BseSI	GKGCMC	1 cut(s)	685
BseXI	GCAGC	1 cut(s)	778
Bsh1236I	CGCG	1 cut(s)	542
BsiHKAI	GWGCWC	1 cut(s)	82
BslI	CCNNNNNNNGG	3 cut(s)	44, 533, 715
BsmAI	GTCTC	1 cut(s)	558
BsmBI	CGTCTC	1 cut(s)	558
BsmI	GAATGC	1 cut(s)	453
Bsp1286I	GDGCHC	2 cut(s)	82, 685
BspACI	CCGC	6 cut(s)	35, 100, 231, 371, 502, 925
BspCNI	CTCAG	2 cut(s)	310, 546
BspFNI	CGCG	1 cut(s)	542
BspHI	TCATGA	1 cut(s)	546
BspMI	ACCTGC	1 cut(s)	816
BspQI	GCTCTTC	1 cut(s)	70
BsrI	ACTGG	2 cut(s)	325, 928
BssECI	CCNNGG	1 cut(s)	532
BssSI	CACGAG	1 cut(s)	744
Bst2BI	CACGAG	1 cut(s)	744
Bst2UI	CCWGG	3 cut(s)	444, 534, 618
Bst4CI	ACNGT	3 cut(s)	414, 628, 661
Bst6I	CTCTTC	1 cut(s)	70
BstBAI	YACGTR	1 cut(s)	686
BstC8I	GCNNGC	1 cut(s)	573
BstDEI	CTNAG	2 cut(s)	297, 554
BstENI	CCTNNNNNAGG	1 cut(s)	531
BstF5I	GGATG	1 cut(s)	88
BstFNI	CGCG	1 cut(s)	542
BstHHI	GCGC	1 cut(s)	544
BstMAI	GTCTC	1 cut(s)	558
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 448, 749
BstNI	CCWGG	3 cut(s)	444, 534, 618
BstSCI	CCNGG	3 cut(s)	442, 532, 616
BstSLI	GKGCMC	1 cut(s)	685
BstUI	CGCG	1 cut(s)	542
BstV1I	GCAGC	1 cut(s)	778
BstV2I	GAAGAC	1 cut(s)	418
BtsCI	GGATG	1 cut(s)	88
BtsIMutI	CAGTG	3 cut(s)	6, 305, 744
BveI	ACCTGC	1 cut(s)	816
Cac8I	GCNNGC	1 cut(s)	573
CciI	TCATGA	1 cut(s)	546
CfoI	GCGC	1 cut(s)	544
Cfr13I	GGNCC	1 cut(s)	614
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	2 cut(s)	43, 916
CspCI	CAANNNNNGTGG	2 cut(s)	498, 533
CviAII	CATG	5 cut(s)	19, 400, 547, 753, 919
CviQI	GTAC	2 cut(s)	43, 916
DdeI	CTNAG	2 cut(s)	297, 554
DrdI	GACNNNNNNGTC	1 cut(s)	102
DseDI	GACNNNNNNGTC	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
EciI	GGCGGA	1 cut(s)	89
Eco32I	GATATC	1 cut(s)	348
Eco47I	GGWCC	1 cut(s)	614
Eco72I	CACGTG	1 cut(s)	686
EcoNI	CCTNNNNNAGG	1 cut(s)	531
EcoO109I	RGGNCCY	1 cut(s)	614
EcoRI	GAATTC	1 cut(s)	944
EcoRII	CCWGG	3 cut(s)	442, 532, 616
EcoRV	GATATC	1 cut(s)	348
Esp3I	CGTCTC	1 cut(s)	558
FaeI	CATG	5 cut(s)	22, 403, 550, 756, 922
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FatI	CATG	5 cut(s)	18, 399, 546, 752, 918
FauI	CCCGC	1 cut(s)	364
FauNDI	CATATG	1 cut(s)	677
Fnu4HI	GCNGC	1 cut(s)	792
FokI	GGATG	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	792
FspBI	CTAG	2 cut(s)	351, 867
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	1 cut(s)	792
HgaI	GACGC	1 cut(s)	272
HhaI	GCGC	1 cut(s)	544
Hin1II	CATG	5 cut(s)	22, 403, 550, 756, 922
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HindIII	AAGCTT	2 cut(s)	276, 638
HinfI	GANTC	7 cut(s)	96, 537, 550, 581, 722, 757, 841
HpaI	GTTAAC	1 cut(s)	358
HphI	GGTGA	1 cut(s)	731
Hpy166II	GTNNAC	2 cut(s)	107, 358
Hpy188I	TCNGA	4 cut(s)	555, 599, 727, 762
Hpy188III	TCNNGA	3 cut(s)	351, 547, 585
Hpy8I	GTNNAC	2 cut(s)	107, 358
HpyAV	CCTTC	8 cut(s)	177, 181, 369, 400, 605, 770, 825, 969
HpyCH4III	ACNGT	3 cut(s)	414, 628, 661
HpyCH4IV	ACGT	2 cut(s)	685, 769
HpyCH4V	TGCA	2 cut(s)	632, 691
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 448, 749
HpyF3I	CTNAG	2 cut(s)	297, 554
HpySE526I	ACGT	2 cut(s)	685, 769
Hsp92II	CATG	5 cut(s)	22, 403, 550, 756, 922
HspAI	GCGC	1 cut(s)	542
KspAI	GTTAAC	1 cut(s)	358
LguI	GCTCTTC	1 cut(s)	70
LmnI	GCTCC	1 cut(s)	749
Lsp1109I	GCAGC	1 cut(s)	778
LweI	GCATC	3 cut(s)	97, 358, 466
MaeI	CTAG	2 cut(s)	351, 867
MaeII	ACGT	2 cut(s)	685, 769
MaeIII	GTNAC	1 cut(s)	4
MboII	GAAGA	6 cut(s)	87, 187, 190, 193, 196, 418
MhlI	GDGCHC	2 cut(s)	82, 685
MluCI	AATT	8 cut(s)	138, 203, 339, 362, 488, 510, 846, 944
MlyI	GAGTC	1 cut(s)	90
MnlI	CCTC	8 cut(s)	184, 306, 494, 549, 581, 726, 740, 805
MroXI	GAANNNNTTC	1 cut(s)	944
MseI	TTAA	4 cut(s)	357, 420, 434, 860
MslI	CAYNNNNRTG	1 cut(s)	389
MspR9I	CCNGG	3 cut(s)	444, 534, 618
Mva1269I	GAATGC	1 cut(s)	453
MvaI	CCWGG	3 cut(s)	444, 534, 618
MvnI	CGCG	1 cut(s)	542
MwoI	GCNNNNNNNGC	3 cut(s)	263, 448, 749
NdeI	CATATG	1 cut(s)	677
NlaIII	CATG	5 cut(s)	22, 403, 550, 756, 922
NmuCI	GTSAC	1 cut(s)	4
PagI	TCATGA	1 cut(s)	546
PciSI	GCTCTTC	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	2 cut(s)	100, 158
PctI	GAATGC	1 cut(s)	453
PdmI	GAANNNNTTC	1 cut(s)	944
PfeI	GAWTC	6 cut(s)	537, 550, 581, 722, 757, 841
PkrI	GCNGC	1 cut(s)	793
PleI	GAGTC	1 cut(s)	90
PmaCI	CACGTG	1 cut(s)	686
PmlI	CACGTG	1 cut(s)	686
PpsI	GAGTC	1 cut(s)	90
Ppu21I	YACGTR	1 cut(s)	686
PpuMI	RGGWCCY	1 cut(s)	614
Psp5II	RGGWCCY	1 cut(s)	614
Psp6I	CCWGG	3 cut(s)	442, 532, 616
PspCI	CACGTG	1 cut(s)	686
PspGI	CCWGG	3 cut(s)	442, 532, 616
PspPI	GGNCC	1 cut(s)	614
PspPPI	RGGWCCY	1 cut(s)	614
RsaI	GTAC	2 cut(s)	44, 917
RsaNI	GTAC	2 cut(s)	43, 916
RseI	CAYNNNNRTG	1 cut(s)	389
SapI	GCTCTTC	1 cut(s)	70
SaqAI	TTAA	4 cut(s)	357, 420, 434, 860
SatI	GCNGC	1 cut(s)	792
Sau96I	GGNCC	1 cut(s)	614
SchI	GAGTC	1 cut(s)	90
ScrFI	CCNGG	3 cut(s)	444, 534, 618
SduI	GDGCHC	2 cut(s)	82, 685
SfaNI	GCATC	3 cut(s)	97, 358, 466
SinI	GGWCC	1 cut(s)	614
SmiMI	CAYNNNNRTG	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
Sse9I	AATT	8 cut(s)	138, 203, 339, 362, 488, 510, 846, 944
SsiI	CCGC	6 cut(s)	35, 100, 231, 371, 502, 925
SspMI	CTAG	2 cut(s)	351, 867
StyD4I	CCNGG	3 cut(s)	442, 532, 616
TaaI	ACNGT	3 cut(s)	414, 628, 661
TaiI	ACGT	2 cut(s)	688, 772
TaqI	TCGA	4 cut(s)	247, 344, 366, 486
TasI	AATT	8 cut(s)	138, 203, 339, 362, 488, 510, 846, 944
TatI	WGTACW	1 cut(s)	915
TfiI	GAWTC	6 cut(s)	537, 550, 581, 722, 757, 841
Tru1I	TTAA	4 cut(s)	357, 420, 434, 860
Tru9I	TTAA	4 cut(s)	357, 420, 434, 860
TscAI	CASTG	3 cut(s)	13, 305, 744
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	1 cut(s)	791
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	7 cut(s)	132, 452, 477, 563, 908, 935, 957
TspGWI	ACGGA	2 cut(s)	60, 698
TspRI	CASTG	3 cut(s)	13, 305, 744
VpaK11BI	GGWCC	1 cut(s)	614
XagI	CCTNNNNNAGG	1 cut(s)	531
XapI	RAATTY	2 cut(s)	488, 944
XbaI	TCTAGA	1 cut(s)	350
XmnI	GAANNNNTTC	1 cut(s)	944
XspI	CTAG	2 cut(s)	351, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.