Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005711

Physical Location & Seq

Genomic Coordinates Forward (+)

17844567 .. 17848676

Gene Structure 4110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2283 bp

ATGGGCGTCGATATGTCTAACAATCCACCAACTTCTCGGACCAAGGACTTCTTTGCTTCCCCGGCCCTCTCCCTCTCCCTCGCTGGGATTTTTCGTGATGCTGGGGCGGCGGCAAGCAGGGAGGTGGAGGAAGGAGATGAGGGCAGCGGTGGAGGCGCAAGTGCAGCTGTAGGCAGTGTCCGCCGGAGAGAAGACACGACGGAGATTAGCAGCGAGAACTCGGGCCCTGGGAGGTCGAGATCGGAAGATGAATTTGACGGAGAAGGAGAGCATGACGAAGATGATGTTGATGGAGACAACAAGAACAAGAAGAAGAAGAGGAAAAAGTACCATAGGCACACCACCGAGCAAATCCGAGAAATGGAGGCGTTGTTCAAAGAATCACCACATCCTGATGAGAAGCAGAGGCAGCAACTGAGCAAGCAATTAGGCCTTGCTCCAAGGCAGGTCAAGTTTTGGTTTCAGAATCGTCGAACCCAAATCAAGGCTATACAAGAACGCCACGAAAACTCTCTGTTGAAAGGTGAAATGGAGAAACTCCGCGATGAAAATAAGGCAATGAGGGAGCAGATAAACAAAGCATGCTGCCCCAACTGTGGCACTGCAACCACTAGCCGGGATGCCACCCTCACCACCGAGGAGCAACAACTGCGAATCGAAAATGCCAGACTCAAATCCGAGGTCGAAAAACTCAGAGCAGCTCTTGTAAAATACCCTCCCGGGACATCCTCTCCTTCCTGCTCCGCTGGTCAAGACCAGGAGAATAGAAGCTCTTTGGACTTCTACACTGGAATCTTCGGTCTTGAGGAGTCGAGGATTATGGAGATAGTGAATCAAGCAATGGAGGAGCTTAAGAAGATGGCTACTGCAGGCGAACCACTCTGGGTTCGGAGTGTGGAGACTGGCCGTGAAATACTTAATTACGATGAGTACATCAAAGAGTTCAACATTGAAGTTCCTGGGAATGGGCGGCCAAAGAGATCCATCGAGGCCTCCAGAGAGACTGGGTTGGTGTTTGTTGACCTTCCGCGACTAGTTCAAAGTTTCATGGATGTGAATCAATGGAAGGAAATGTTTCCATGCATGATCGATCAAAGGCGGCAACTGTTGATGTTATTAACAATGGTGAAGGAGACAACAGAAATGGTGCAGTACAATTGGTTTGCAGAGCTGCAAATGCTTACACCCTTGGTTCCCACTAGAGAAGTGTACTTCGTTCGATGTTGCAAGCAATTGAGTCCTGAACAATGGGCTATAGTTGATGTTTCGATTGACAAAGTCGAAGATAACATAGATGCATCCTTGGTGAAATGCAGGAAGCGTCCCTCTGGATGCATCATCGAGGACAAAACAAATGGCCACTGCAAGGTGATCTGGGTGGAGCACCTAGAATGCCAGAGAAGCACAATTCAGACCATGTACCGCACCATTGTCAACAGCGGTCTAGCATTTGGAGCAAGACATTGGGTAGCAACGCTGCAACTGCAATGCGAACGGCTTGTTTTCTTCATGGCAACCAATGTTCCCATGAAGGATTCAACTGGTGTGGCCACCCTTGCTGGGAGAAAAAGCATTCTAAAATTGGCACAAAGAATGACAGCCAGCTTTTGTCGTGCAATCGGAGCATCAAGCTACCATACCTGGACCAAGATCTCAAGCAAAACAGGGGACGACATAAGGATTGCCTCCAGAAAGAACTTGAACGACCCAGGAGAGCCTCTCGGTGTGATTTTGTGCGCTGTTTCTTCAGTATGGCTGCCCGTCTCTCCTTATCTGCTCTTCGATTTCTTAAGAGACGAGGCTCGAAGGAATGAGTGGGATATAATGTTAAATGGAGGACCCGCTCAAACAATTGCAAACCTATCCAAAGGACAAGATCGTGGCAATGCTGTTACAATCCAAAGCATGAAATCAAAAGAAAACAGCATGTGGATACTGCAAGATACCTGCATAAACTCTTACGAGTCGATGGTGGTCTACGCTCCAGTGGATATCACCGGAATGCAGTCGGTGATGACCGGATGCGACGCGAGCAACATCGCCATATTGCCTTCAGGGTTCTCGATTCTTCCTGATGGGCTGGAGTCGAGACCGATGGTCCTCACATCCAGCCAAGAAGACAGGAGCAGTGAAGGAGGAACTCTGCTGACAGCAGCATTTCAAGTCTTGACAAATTCCTCCCCCACAGCCAAGCTAACAATGGAGTCTGTGGAGTCAGTCAACACTCTAATATCATGCACTTTGAGAAATATTAAAACAAGCTTGCAGTGTGAGGATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

761

Amino Acids

85.05

Weight (kDa)

5.78

Isoelectric Point (pI)

54.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	107 - 162	3.6e-19	Homeodomain
START	PF01852	276 - 499	6.8e-46	START domain
PDF2_C	PF25797	518 - 757	4.6e-108	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79840 AT1G79840 AT1G79840 AT1G79840 AT1G79840 AT1G79840
fragaria_vesca	FvH4_6g31780 FvH4_6g31780 FvH4_6g31780 FvH4_6g31780 FvH4_6g31780 FvH4_6g31780
malus_domestica	MD09G1209300.v1.1 MD17G1191000.v1.1
prunus_persica	Prupe.3G067200_v2.0.a1
pyrus_communis	pycom09g12540 pycom17g19810
rosa_chinensis	RchiOBHm_Chr2g0138951
rosa_laevigata	RLG00000019771
rosa_multiflora	Rmu_sc0001376.1_g000004
rosa_roxburghii	Rroxscaffold_2G00105840
rosa_rugosa	Rorug02G0353500 Rorug02G0353600
rosa_samantha	Rh2AG403500 Rh2BG413900 Rh2CG389600 Rh2DG423700
rosa_wichuraiana	Rw2G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	436, 1955
AccBSI	CCGCTC	1 cut(s)	1844
AccI	GTMKAC	1 cut(s)	1977
AccII	CGCG	3 cut(s)	543, 1030, 2030
AclWI	GGATC	1 cut(s)	975
AcoI	YGGCCR	4 cut(s)	904, 971, 1357, 1548
AcsI	RAATTY	2 cut(s)	251, 2173
AcuI	CTGAAG	2 cut(s)	1731, 2037
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	5 cut(s)	329, 932, 1154, 1211, 1421
AfiI	CCNNNNNNNGG	8 cut(s)	84, 361, 484, 596, 615, 965, 1366, 1560
AflII	CTTAAG	2 cut(s)	851, 1789
AgsI	TTSAA	8 cut(s)	376, 520, 946, 953, 1040, 1539, 1702, 2162
AhdI	GACNNNNNGTC	1 cut(s)	2096
AhlI	ACTAGT	1 cut(s)	1033
AjnI	CCWGG	5 cut(s)	226, 756, 958, 1640, 1708
AloI	GAACNNNNNNTCC	2 cut(s)	356, 388
AluBI	AGCT	9 cut(s)	167, 701, 771, 850, 1171, 1605, 1632, 2194, 2262
AluI	AGCT	9 cut(s)	167, 701, 771, 850, 1171, 1605, 1632, 2194, 2262
Alw21I	GWGCWC	1 cut(s)	1386
Alw26I	GTCTC	7 cut(s)	288, 893, 995, 1127, 1768, 1788, 2083
AlwI	GGATC	1 cut(s)	975
AlwNI	CAGNNNCTG	1 cut(s)	415
Ama87I	CYCGRG	2 cut(s)	220, 719
AoxI	GGCC	8 cut(s)	63, 223, 430, 904, 971, 990, 1357, 1548
ApaI	GGGCCC	1 cut(s)	227
ApoI	RAATTY	2 cut(s)	251, 2173
ArsI	GACNNNNNNTTYG	2 cut(s)	666, 698
Asp700I	GAANNNNTTC	1 cut(s)	1074
AspLEI	GCGC	2 cut(s)	158, 1739
AspS9I	GGNCC	7 cut(s)	39, 64, 223, 224, 1644, 1838, 2098
AsuC2I	CCSGG	4 cut(s)	62, 617, 720, 721
AsuHPI	GGTGA	8 cut(s)	375, 536, 622, 1138, 1318, 1381, 1987, 2023
AvaI	CYCGRG	2 cut(s)	220, 719
AvaII	GGWCC	4 cut(s)	39, 1644, 1838, 2098
BaeGI	GKGCMC	1 cut(s)	227
BalI	TGGCCA	2 cut(s)	1359, 1550
BanII	GRGCYC	1 cut(s)	227
BbsI	GAAGAC	2 cut(s)	198, 2124
Bbv12I	GWGCWC	1 cut(s)	1386
BccI	CCATC	7 cut(s)	284, 853, 992, 1963, 2069, 2089, 2270
BceAI	ACGGC	2 cut(s)	891, 1511
BciT130I	CCWGG	5 cut(s)	228, 758, 960, 1642, 1710
BciVI	GTATCC	1 cut(s)	1926
BcnI	CCSGG	4 cut(s)	62, 617, 720, 721
BcoDI	GTCTC	7 cut(s)	288, 893, 995, 1127, 1768, 1788, 2083
BcuI	ACTAGT	1 cut(s)	1033
BfaI	CTAG	5 cut(s)	612, 1034, 1200, 1388, 1445
BfmI	CTRYAG	3 cut(s)	168, 867, 1254
BfrI	CTTAAG	2 cut(s)	851, 1789
BfuAI	ACCTGC	2 cut(s)	436, 1955
BfuI	GTATCC	1 cut(s)	1926
BglII	AGATCT	1 cut(s)	1650
Bme1390I	CCNGG	9 cut(s)	62, 228, 617, 720, 721, 758, 960, 1642, 1710
Bme18I	GGWCC	4 cut(s)	39, 1644, 1838, 2098
BmeRI	GACNNNNNGTC	1 cut(s)	2096
BmeT110I	CYCGRG	2 cut(s)	220, 719
BmgT120I	GGNCC	7 cut(s)	39, 64, 223, 224, 1644, 1838, 2098
BmiI	GGNNCC	3 cut(s)	225, 1194, 1840
BmrFI	CCNGG	9 cut(s)	62, 228, 617, 720, 721, 758, 960, 1642, 1710
BmrI	ACTGGG	1 cut(s)	1014
BmsI	GCATC	8 cut(s)	88, 610, 1285, 1307, 1322, 1344, 1634, 2012
BmuI	ACTGGG	1 cut(s)	1014
BpiI	GAAGAC	2 cut(s)	198, 2124
BplI	GAGNNNNNCTC	2 cut(s)	1704, 1736
BpmI	CTGGAG	4 cut(s)	979, 1672, 1968, 2102
BpuEI	CTTGAG	2 cut(s)	824, 1639
BpuMI	CCSGG	4 cut(s)	62, 617, 720, 721
Bsa29I	ATCGAT	1 cut(s)	1089
BsaBI	GATNNNNATC	1 cut(s)	1056
BsaHI	GRCGYC	1 cut(s)	6
BsaI	GGTCTC	1 cut(s)	2083
BsaWI	WCCGGW	2 cut(s)	1997, 2018
BsaXI	ACNNNNNCTCC	4 cut(s)	356, 386, 715, 745
Bsc4I	CCNNNNNNNGG	8 cut(s)	84, 361, 484, 596, 615, 965, 1366, 1560
Bse1I	ACTGG	5 cut(s)	793, 907, 1009, 1546, 1985
Bse3DI	GCAATG	4 cut(s)	564, 846, 1493, 1891
Bse8I	GATNNNNATC	1 cut(s)	1056
BseBI	CCWGG	5 cut(s)	228, 758, 960, 1642, 1710
BseCI	ATCGAT	1 cut(s)	1089
BseGI	GGATG	9 cut(s)	388, 625, 725, 1057, 1298, 1337, 2027, 2105, 2281
BseJI	GATNNNNATC	1 cut(s)	1056
BseLI	CCNNNNNNNGG	8 cut(s)	84, 361, 484, 596, 615, 965, 1366, 1560
BseMI	GCAATG	4 cut(s)	564, 846, 1493, 1891
BseMII	CTCAG	2 cut(s)	407, 706
BseNI	ACTGG	5 cut(s)	793, 907, 1009, 1546, 1985
BseRI	GAGGAG	3 cut(s)	653, 821, 860
BseSI	GKGCMC	1 cut(s)	227
BseYI	CCCAGC	3 cut(s)	83, 101, 1559
BsgI	GTGCAG	2 cut(s)	183, 1169
Bsh1236I	CGCG	3 cut(s)	543, 1030, 2030
BshFI	GGCC	8 cut(s)	65, 225, 432, 906, 973, 992, 1359, 1550
BshVI	ATCGAT	1 cut(s)	1089
BsiHKAI	GWGCWC	1 cut(s)	1386
BsiHKCI	CYCGRG	2 cut(s)	220, 719
BsiSI	CCGG	6 cut(s)	62, 184, 616, 720, 1998, 2019
BslFI	GGGAC	3 cut(s)	736, 1308, 1682
BslI	CCNNNNNNNGG	8 cut(s)	84, 361, 484, 596, 615, 965, 1366, 1560
BsmAI	GTCTC	7 cut(s)	288, 893, 995, 1127, 1768, 1788, 2083
BsmBI	CGTCTC	2 cut(s)	1768, 1788
BsmFI	GGGAC	3 cut(s)	736, 1308, 1682
BsmI	GAATGC	3 cut(s)	1397, 1572, 2007
BsnI	GGCC	8 cut(s)	65, 225, 432, 906, 973, 992, 1359, 1550
Bso31I	GGTCTC	1 cut(s)	2083
BsoBI	CYCGRG	2 cut(s)	220, 719
Bsp120I	GGGCCC	1 cut(s)	223
Bsp1286I	GDGCHC	2 cut(s)	227, 1386
Bsp143I	GATC	7 cut(s)	239, 980, 1086, 1090, 1371, 1650, 1876
BspANI	GGCC	8 cut(s)	65, 225, 432, 906, 973, 992, 1359, 1550
BspCNI	CTCAG	2 cut(s)	408, 705
BspDI	ATCGAT	1 cut(s)	1089
BspFNI	CGCG	3 cut(s)	543, 1030, 2030
BspLI	GGNNCC	3 cut(s)	225, 1194, 1840
BspMAI	CTGCAG	1 cut(s)	871
BspMI	ACCTGC	2 cut(s)	436, 1955
BspPI	GGATC	1 cut(s)	975
BspQI	GCTCTTC	1 cut(s)	1784
BspTI	CTTAAG	2 cut(s)	851, 1789
BspTNI	GGTCTC	1 cut(s)	2083
BsrBI	CCGCTC	1 cut(s)	1844
BsrDI	GCAATG	4 cut(s)	564, 846, 1493, 1891
BsrI	ACTGG	5 cut(s)	793, 907, 1009, 1546, 1985
BssMI	GATC	7 cut(s)	239, 980, 1086, 1090, 1371, 1650, 1876
BssNI	GRCGYC	1 cut(s)	6
BssT1I	CCWWGG	4 cut(s)	42, 440, 1188, 1302
Bst2UI	CCWGG	5 cut(s)	228, 758, 960, 1642, 1710
Bst4CI	ACNGT	2 cut(s)	596, 1107
Bst6I	CTCTTC	2 cut(s)	311, 1784
BstACI	GRCGYC	1 cut(s)	6
BstAFI	CTTAAG	2 cut(s)	851, 1789
BstAPI	GCANNNNNTGC	1 cut(s)	649
BstC8I	GCNNGC	8 cut(s)	115, 422, 583, 871, 1229, 1603, 2032, 2264
BstDEI	CTNAG	2 cut(s)	416, 692
BstF5I	GGATG	9 cut(s)	388, 625, 725, 1057, 1298, 1337, 2027, 2105, 2281
BstFNI	CGCG	3 cut(s)	543, 1030, 2030
BstHHI	GCGC	2 cut(s)	158, 1739
BstKTI	GATC	7 cut(s)	242, 983, 1089, 1093, 1374, 1653, 1879
BstMAI	GTCTC	7 cut(s)	288, 893, 995, 1127, 1768, 1788, 2083
BstMBI	GATC	7 cut(s)	239, 980, 1086, 1090, 1371, 1650, 1876
BstNI	CCWGG	5 cut(s)	228, 758, 960, 1642, 1710
BstNSI	RCATGY	2 cut(s)	585, 1930
BstSCI	CCNGG	9 cut(s)	60, 226, 615, 718, 719, 756, 958, 1640, 1708
BstSFI	CTRYAG	3 cut(s)	168, 867, 1254
BstSLI	GKGCMC	1 cut(s)	227
BstUI	CGCG	3 cut(s)	543, 1030, 2030
BstV2I	GAAGAC	2 cut(s)	198, 2124
BstX2I	RGATCY	2 cut(s)	980, 1650
BstYI	RGATCY	2 cut(s)	980, 1650
Bsu15I	ATCGAT	1 cut(s)	1089
BsuI	GTATCC	1 cut(s)	1926
BsuRI	GGCC	8 cut(s)	65, 225, 432, 906, 973, 992, 1359, 1550
BsuTUI	ATCGAT	1 cut(s)	1089
BtgZI	GCGATG	2 cut(s)	558, 2023
BtsCI	GGATG	9 cut(s)	388, 625, 725, 1057, 1298, 1337, 2027, 2105, 2281
BtsI	GCAGTG	5 cut(s)	181, 600, 1360, 2134, 2273
BtsIMutI	CAGTG	7 cut(s)	181, 600, 786, 1360, 1992, 2134, 2273
BveI	ACCTGC	2 cut(s)	436, 1955
Cac8I	GCNNGC	8 cut(s)	115, 422, 583, 871, 1229, 1603, 2032, 2264
CaiI	CAGNNNCTG	1 cut(s)	415
CfoI	GCGC	2 cut(s)	158, 1739
Cfr13I	GGNCC	7 cut(s)	39, 64, 223, 224, 1644, 1838, 2098
Cfr9I	CCCGGG	1 cut(s)	719
ClaI	ATCGAT	1 cut(s)	1089
CseI	GACGC	2 cut(s)	1310, 2036
Csp6I	GTAC	5 cut(s)	328, 931, 1153, 1210, 1420
CspCI	CAANNNNNGTGG	2 cut(s)	1527, 1562
CviQI	GTAC	5 cut(s)	328, 931, 1153, 1210, 1420
DdeI	CTNAG	2 cut(s)	416, 692
DpnI	GATC	7 cut(s)	241, 982, 1088, 1092, 1373, 1652, 1878
DpnII	GATC	7 cut(s)	239, 980, 1086, 1090, 1371, 1650, 1876
DriI	GACNNNNNGTC	1 cut(s)	2096
EaeI	YGGCCR	4 cut(s)	904, 971, 1357, 1548
Eam1104I	CTCTTC	2 cut(s)	311, 1784
Eam1105I	GACNNNNNGTC	1 cut(s)	2096
EarI	CTCTTC	2 cut(s)	311, 1784
EciI	GGCGGA	1 cut(s)	170
Eco130I	CCWWGG	4 cut(s)	42, 440, 1188, 1302
Eco147I	AGGCCT	2 cut(s)	432, 992
Eco24I	GRGCYC	1 cut(s)	227
Eco31I	GGTCTC	1 cut(s)	2083
Eco32I	GATATC	1 cut(s)	1993
Eco47I	GGWCC	4 cut(s)	39, 1644, 1838, 2098
Eco57I	CTGAAG	2 cut(s)	1731, 2037
Eco88I	CYCGRG	2 cut(s)	220, 719
EcoO109I	RGGNCCY	2 cut(s)	224, 1838
EcoRII	CCWGG	5 cut(s)	226, 756, 958, 1640, 1708
EcoRV	GATATC	1 cut(s)	1993
EcoT14I	CCWWGG	4 cut(s)	42, 440, 1188, 1302
EcoT22I	ATGCAT	3 cut(s)	1085, 1300, 1337
EcoT38I	GRGCYC	1 cut(s)	227
ErhI	CCWWGG	4 cut(s)	42, 440, 1188, 1302
Esp3I	CGTCTC	2 cut(s)	1768, 1788
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FaqI	GGGAC	3 cut(s)	736, 1308, 1682
FauI	CCCGC	1 cut(s)	1849
FblI	GTMKAC	1 cut(s)	1977
FokI	GGATG	8 cut(s)	375, 632, 712, 1064, 1285, 1344, 2034, 2092
FriOI	GRGCYC	1 cut(s)	227
FspBI	CTAG	5 cut(s)	612, 1034, 1200, 1388, 1445
GlaI	GCGC	2 cut(s)	157, 1738
GsaI	CCCAGC	3 cut(s)	87, 105, 1563
GsuI	CTGGAG	4 cut(s)	979, 1672, 1968, 2102
HaeIII	GGCC	8 cut(s)	65, 225, 432, 906, 973, 992, 1359, 1550
HapII	CCGG	6 cut(s)	62, 184, 616, 720, 1998, 2019
HgaI	GACGC	2 cut(s)	1310, 2036
HhaI	GCGC	2 cut(s)	158, 1739
Hin1I	GRCGYC	1 cut(s)	6
Hin6I	GCGC	2 cut(s)	156, 1737
HinP1I	GCGC	2 cut(s)	156, 1737
HincII	GTYRAC	3 cut(s)	1021, 1435, 2221
HindII	GTYRAC	3 cut(s)	1021, 1435, 2221
HindIII	AAGCTT	1 cut(s)	2260
HpaII	CCGG	6 cut(s)	62, 184, 616, 720, 1998, 2019
HphI	GGTGA	8 cut(s)	375, 536, 622, 1138, 1318, 1381, 1987, 2023
Hpy166II	GTNNAC	5 cut(s)	1021, 1210, 1435, 1978, 2221
Hpy188I	TCNGA	9 cut(s)	39, 244, 356, 465, 679, 695, 891, 1413, 1622
Hpy8I	GTNNAC	5 cut(s)	1021, 1210, 1435, 1978, 2221
Hpy99I	CGWCG	4 cut(s)	11, 202, 474, 2030
HpyCH4III	ACNGT	2 cut(s)	596, 1107
HpyF3I	CTNAG	2 cut(s)	416, 692
Hsp92I	GRCGYC	1 cut(s)	6
HspAI	GCGC	2 cut(s)	156, 1737
Kzo9I	GATC	7 cut(s)	239, 980, 1086, 1090, 1371, 1650, 1876
LguI	GCTCTTC	1 cut(s)	1784
LweI	GCATC	8 cut(s)	88, 610, 1285, 1307, 1322, 1344, 1634, 2012
MaeI	CTAG	5 cut(s)	612, 1034, 1200, 1388, 1445
MaeIII	GTNAC	1 cut(s)	1891
MalI	GATC	7 cut(s)	241, 982, 1088, 1092, 1373, 1652, 1878
MbiI	CCGCTC	1 cut(s)	1844
MboI	GATC	7 cut(s)	239, 980, 1086, 1090, 1371, 1650, 1876
MfeI	CAATTG	3 cut(s)	1156, 1232, 1851
MflI	RGATCY	2 cut(s)	980, 1650
MhlI	GDGCHC	2 cut(s)	227, 1386
MlsI	TGGCCA	2 cut(s)	1359, 1550
MluCI	AATT	9 cut(s)	251, 425, 919, 1156, 1232, 1407, 1580, 1851, 2173
MluNI	TGGCCA	2 cut(s)	1359, 1550
MlyI	GAGTC	7 cut(s)	663, 818, 1246, 1973, 2093, 2213, 2222
Mox20I	TGGCCA	2 cut(s)	1359, 1550
Mph1103I	ATGCAT	3 cut(s)	1085, 1300, 1337
MroXI	GAANNNNTTC	1 cut(s)	1074
MscI	TGGCCA	2 cut(s)	1359, 1550
MseI	TTAA	6 cut(s)	852, 918, 1118, 1790, 1829, 2253
MslI	CAYNNNNRTG	3 cut(s)	393, 1052, 2000
Msp20I	TGGCCA	2 cut(s)	1359, 1550
MspA1I	CMGCKG	4 cut(s)	147, 167, 746, 1440
MspCI	CTTAAG	2 cut(s)	851, 1789
MspI	CCGG	6 cut(s)	62, 184, 616, 720, 1998, 2019
MspR9I	CCNGG	9 cut(s)	62, 228, 617, 720, 721, 758, 960, 1642, 1710
MunI	CAATTG	3 cut(s)	1156, 1232, 1851
Mva1269I	GAATGC	3 cut(s)	1397, 1572, 2007
MvaI	CCWGG	5 cut(s)	228, 758, 960, 1642, 1710
MvnI	CGCG	3 cut(s)	543, 1030, 2030
NciI	CCSGG	4 cut(s)	62, 617, 720, 721
NdeII	GATC	7 cut(s)	239, 980, 1086, 1090, 1371, 1650, 1876
NlaIV	GGNNCC	3 cut(s)	225, 1194, 1840
NsiI	ATGCAT	3 cut(s)	1085, 1300, 1337
NspI	RCATGY	2 cut(s)	585, 1930
PaeI	GCATGC	1 cut(s)	585
PasI	CCCWGGG	1 cut(s)	227
PceI	AGGCCT	2 cut(s)	432, 992
PciSI	GCTCTTC	1 cut(s)	1784
PctI	GAATGC	3 cut(s)	1397, 1572, 2007
PdmI	GAANNNNTTC	1 cut(s)	1074
PfeI	GAWTC	8 cut(s)	380, 466, 654, 792, 832, 1057, 1535, 2065
PflFI	GACNNNGTC	1 cut(s)	1277
PleI	GAGTC	7 cut(s)	663, 817, 1245, 1972, 2092, 2212, 2221
PpsI	GAGTC	7 cut(s)	663, 817, 1245, 1972, 2092, 2212, 2221
PpuMI	RGGWCCY	1 cut(s)	1838
Psp5II	RGGWCCY	1 cut(s)	1838
Psp6I	CCWGG	5 cut(s)	226, 756, 958, 1640, 1708
PspFI	CCCAGC	3 cut(s)	83, 101, 1559
PspGI	CCWGG	5 cut(s)	226, 756, 958, 1640, 1708
PspN4I	GGNNCC	3 cut(s)	225, 1194, 1840
PspOMI	GGGCCC	1 cut(s)	223
PspPI	GGNCC	7 cut(s)	39, 64, 223, 224, 1644, 1838, 2098
PspPPI	RGGWCCY	1 cut(s)	1838
PstI	CTGCAG	1 cut(s)	871
PstNI	CAGNNNCTG	1 cut(s)	415
PsuI	RGATCY	2 cut(s)	980, 1650
PsyI	GACNNNGTC	1 cut(s)	1277
PvuII	CAGCTG	1 cut(s)	167
RsaI	GTAC	5 cut(s)	329, 932, 1154, 1211, 1421
RsaNI	GTAC	5 cut(s)	328, 931, 1153, 1210, 1420
RseI	CAYNNNNRTG	3 cut(s)	393, 1052, 2000
SapI	GCTCTTC	1 cut(s)	1784
SaqAI	TTAA	6 cut(s)	852, 918, 1118, 1790, 1829, 2253
Sau3AI	GATC	7 cut(s)	239, 980, 1086, 1090, 1371, 1650, 1876
Sau96I	GGNCC	7 cut(s)	39, 64, 223, 224, 1644, 1838, 2098
SchI	GAGTC	7 cut(s)	663, 818, 1246, 1973, 2093, 2213, 2222
ScrFI	CCNGG	9 cut(s)	62, 228, 617, 720, 721, 758, 960, 1642, 1710
SduI	GDGCHC	2 cut(s)	227, 1386
SfaNI	GCATC	8 cut(s)	88, 610, 1285, 1307, 1322, 1344, 1634, 2012
SfcI	CTRYAG	3 cut(s)	168, 867, 1254
SinI	GGWCC	4 cut(s)	39, 1644, 1838, 2098
SmaI	CCCGGG	1 cut(s)	721
SmiMI	CAYNNNNRTG	3 cut(s)	393, 1052, 2000
SmlI	CTYRAG	4 cut(s)	803, 851, 1654, 1789
SmoI	CTYRAG	4 cut(s)	803, 851, 1654, 1789
SpeI	ACTAGT	1 cut(s)	1033
SphI	GCATGC	1 cut(s)	585
Sse9I	AATT	9 cut(s)	251, 425, 919, 1156, 1232, 1407, 1580, 1851, 2173
SseBI	AGGCCT	2 cut(s)	432, 992
SspI	AATATT	1 cut(s)	2251
SspMI	CTAG	5 cut(s)	612, 1034, 1200, 1388, 1445
StuI	AGGCCT	2 cut(s)	432, 992
StyD4I	CCNGG	9 cut(s)	60, 226, 615, 718, 719, 756, 958, 1640, 1708
StyI	CCWWGG	4 cut(s)	42, 440, 1188, 1302
TaaI	ACNGT	2 cut(s)	596, 1107
TaqII	GACCGA	2 cut(s)	788, 2107
TasI	AATT	9 cut(s)	251, 425, 919, 1156, 1232, 1407, 1580, 1851, 2173
TatI	WGTACW	3 cut(s)	930, 1152, 1209
TauI	GCSGC	4 cut(s)	110, 113, 973, 1102
TfiI	GAWTC	8 cut(s)	380, 466, 654, 792, 832, 1057, 1535, 2065
Tru1I	TTAA	6 cut(s)	852, 918, 1118, 1790, 1829, 2253
Tru9I	TTAA	6 cut(s)	852, 918, 1118, 1790, 1829, 2253
TscAI	CASTG	7 cut(s)	181, 607, 793, 1367, 1992, 2134, 2273
TspDTI	ATGAA	6 cut(s)	264, 561, 1036, 1498, 1544, 1922
TspGWI	ACGGA	2 cut(s)	215, 273
TspMI	CCCGGG	1 cut(s)	719
TspRI	CASTG	7 cut(s)	181, 607, 793, 1367, 1992, 2134, 2273
Tth111I	GACNNNGTC	1 cut(s)	1277
Vha464I	CTTAAG	2 cut(s)	851, 1789
VpaK11BI	GGWCC	4 cut(s)	39, 1644, 1838, 2098
XapI	RAATTY	2 cut(s)	251, 2173
XceI	RCATGY	2 cut(s)	585, 1930
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2197
XmaI	CCCGGG	1 cut(s)	719
XmiI	GTMKAC	1 cut(s)	1977
XmnI	GAANNNNTTC	1 cut(s)	1074
XspI	CTAG	5 cut(s)	612, 1034, 1200, 1388, 1445
Zsp2I	ATGCAT	3 cut(s)	1085, 1300, 1337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.