Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G16010 |
| fragaria_vesca | FvH4_6g31160 |
| malus_domestica | MD17G1195500.v1.1 |
| prunus_persica | Prupe.3G071400_v2.0.a1 |
| pyrus_communis | pycom17g20110 |
| rosa_chinensis | RchiOBHm_Chr2g0137841 |
| rosa_laevigata | RLG00000019680 |
| rosa_multiflora | Rmu_co8002616.1_g000001 Rmu_sc0002170.1_g000007 Rmu_sc0007548.1_g000006 |
| rosa_roxburghii | Rroxscaffold_2G00106770 |
| rosa_rugosa | Rorug02G0346600 Rorug02G0346700 Rorug02G0346800 Rorug02G0346900 Rorug02G0347000 |
| rosa_samantha | Rh2AG393400 Rh2BG400900 Rh2CG380100 Rh2DG415900 |
| rosa_wichuraiana | Rw2G032220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 1131, 1554, 1764 |
| AatII | GACGTC | 1 cut(s) | 1943 |
| AccB1I | GGYRCC | 1 cut(s) | 897 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 460 |
| AccBSI | CCGCTC | 1 cut(s) | 950 |
| AccI | GTMKAC | 1 cut(s) | 960 |
| AccII | CGCG | 1 cut(s) | 299 |
| AciI | CCGC | 8 cut(s) | 37, 299, 406, 726, 902, 950, 1378, 1754 |
| AclWI | GGATC | 3 cut(s) | 397, 1509, 1936 |
| AcsI | RAATTY | 3 cut(s) | 19, 222, 367 |
| AcuI | CTGAAG | 2 cut(s) | 165, 287 |
| AcyI | GRCGYC | 2 cut(s) | 1483, 1940 |
| AfaI | GTAC | 3 cut(s) | 392, 1382, 1868 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 412, 460, 732, 877, 994, 1702 |
| AflII | CTTAAG | 1 cut(s) | 865 |
| AflIII | ACRYGT | 1 cut(s) | 162 |
| AjnI | CCWGG | 2 cut(s) | 561, 1187 |
| Alw21I | GWGCWC | 5 cut(s) | 475, 660, 718, 1023, 1168 |
| Alw44I | GTGCAC | 2 cut(s) | 471, 714 |
| AlwI | GGATC | 3 cut(s) | 397, 1509, 1936 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 128 |
| AoxI | GGCC | 2 cut(s) | 571, 1693 |
| ApaLI | GTGCAC | 2 cut(s) | 471, 714 |
| ApeKI | GCWGC | 8 cut(s) | 122, 408, 1181, 1337, 1347, 1388, 1635, 1811 |
| ApoI | RAATTY | 3 cut(s) | 19, 222, 367 |
| AseI | ATTAAT | 1 cut(s) | 75 |
| AspLEI | GCGC | 1 cut(s) | 1561 |
| AspS9I | GGNCC | 4 cut(s) | 175, 236, 649, 1694 |
| AsuHPI | GGTGA | 6 cut(s) | 101, 275, 446, 547, 1135, 1588 |
| AvaII | GGWCC | 3 cut(s) | 175, 236, 649 |
| AxyI | CCTNAGG | 1 cut(s) | 1921 |
| BaeGI | GKGCMC | 3 cut(s) | 475, 718, 902 |
| BanI | GGYRCC | 1 cut(s) | 897 |
| BanII | GRGCYC | 2 cut(s) | 660, 1168 |
| BbsI | GAAGAC | 1 cut(s) | 1908 |
| Bbv12I | GWGCWC | 5 cut(s) | 475, 660, 718, 1023, 1168 |
| BbvI | GCAGC | 8 cut(s) | 134, 395, 1193, 1324, 1359, 1375, 1622, 1798 |
| BccI | CCATC | 5 cut(s) | 526, 1247, 1300, 1567, 1825 |
| BceAI | ACGGC | 1 cut(s) | 1648 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 407, 441, 953, 987 |
| BciT130I | CCWGG | 2 cut(s) | 563, 1189 |
| BclI | TGATCA | 1 cut(s) | 1353 |
| BfaI | CTAG | 5 cut(s) | 117, 872, 1440, 1526, 1683 |
| BfrI | CTTAAG | 1 cut(s) | 865 |
| BisI | GCNGC | 8 cut(s) | 123, 409, 1182, 1338, 1348, 1389, 1636, 1812 |
| BlsI | GCNGC | 8 cut(s) | 124, 410, 1183, 1339, 1349, 1390, 1637, 1813 |
| Bme1390I | CCNGG | 2 cut(s) | 563, 1189 |
| Bme18I | GGWCC | 3 cut(s) | 175, 236, 649 |
| BmgT120I | GGNCC | 4 cut(s) | 175, 236, 649, 1694 |
| BmiI | GGNNCC | 3 cut(s) | 177, 237, 899 |
| BmrFI | CCNGG | 2 cut(s) | 563, 1189 |
| BmrI | ACTGGG | 1 cut(s) | 1218 |
| BmsI | GCATC | 9 cut(s) | 134, 232, 615, 955, 1060, 1375, 1483, 1520, 1741 |
| BmuI | ACTGGG | 1 cut(s) | 1218 |
| BpiI | GAAGAC | 1 cut(s) | 1908 |
| BpmI | CTGGAG | 1 cut(s) | 1152 |
| BpuEI | CTTGAG | 2 cut(s) | 290, 1901 |
| BsaAI | YACGTR | 2 cut(s) | 390, 1866 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1040 |
| BsaHI | GRCGYC | 2 cut(s) | 1483, 1940 |
| BsaJI | CCNNGG | 1 cut(s) | 1176 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 412, 460, 732, 877, 994, 1702 |
| Bse1I | ACTGG | 3 cut(s) | 109, 261, 1224 |
| Bse21I | CCTNAGG | 1 cut(s) | 1921 |
| Bse3DI | GCAATG | 1 cut(s) | 1105 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1040 |
| BseBI | CCWGG | 2 cut(s) | 563, 1189 |
| BseDI | CCNNGG | 1 cut(s) | 1176 |
| BseGI | GGATG | 9 cut(s) | 195, 202, 325, 796, 1097, 1315, 1535, 1578, 1947 |
| BseJI | GATNNNNATC | 1 cut(s) | 1040 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 412, 460, 732, 877, 994, 1702 |
| BseMI | GCAATG | 1 cut(s) | 1105 |
| BseMII | CTCAG | 4 cut(s) | 263, 483, 983, 1935 |
| BseNI | ACTGG | 3 cut(s) | 109, 261, 1224 |
| BseRI | GAGGAG | 1 cut(s) | 45 |
| BseSI | GKGCMC | 3 cut(s) | 475, 718, 902 |
| BseXI | GCAGC | 8 cut(s) | 134, 395, 1193, 1324, 1359, 1375, 1622, 1798 |
| BseYI | CCCAGC | 1 cut(s) | 353 |
| Bsh1236I | CGCG | 1 cut(s) | 299 |
| BshFI | GGCC | 2 cut(s) | 573, 1695 |
| BshNI | GGYRCC | 1 cut(s) | 897 |
| BsiHKAI | GWGCWC | 5 cut(s) | 475, 660, 718, 1023, 1168 |
| BslFI | GGGAC | 1 cut(s) | 249 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 412, 460, 732, 877, 994, 1702 |
| BsmFI | GGGAC | 1 cut(s) | 249 |
| BsmI | GAATGC | 2 cut(s) | 1638, 1732 |
| BsnI | GGCC | 2 cut(s) | 573, 1695 |
| Bsp1286I | GDGCHC | 6 cut(s) | 475, 660, 718, 902, 1023, 1168 |
| Bsp143I | GATC | 6 cut(s) | 280, 402, 612, 1353, 1501, 1928 |
| BspACI | CCGC | 8 cut(s) | 37, 299, 406, 726, 902, 950, 1378, 1754 |
| BspANI | GGCC | 2 cut(s) | 573, 1695 |
| BspCNI | CTCAG | 4 cut(s) | 264, 484, 984, 1934 |
| BspFNI | CGCG | 1 cut(s) | 299 |
| BspHI | TCATGA | 1 cut(s) | 1023 |
| BspLI | GGNNCC | 3 cut(s) | 177, 237, 899 |
| BspPI | GGATC | 3 cut(s) | 397, 1509, 1936 |
| BspQI | GCTCTTC | 1 cut(s) | 129 |
| BspT107I | GGYRCC | 1 cut(s) | 897 |
| BspTI | CTTAAG | 1 cut(s) | 865 |
| BsrBI | CCGCTC | 1 cut(s) | 950 |
| BsrDI | GCAATG | 1 cut(s) | 1105 |
| BsrI | ACTGG | 3 cut(s) | 109, 261, 1224 |
| BssECI | CCNNGG | 1 cut(s) | 1176 |
| BssMI | GATC | 6 cut(s) | 280, 402, 612, 1353, 1501, 1928 |
| BssNI | GRCGYC | 2 cut(s) | 1483, 1940 |
| Bst2UI | CCWGG | 2 cut(s) | 563, 1189 |
| Bst4CI | ACNGT | 6 cut(s) | 689, 703, 713, 910, 1138, 1361 |
| Bst6I | CTCTTC | 4 cut(s) | 129, 353, 1296, 1800 |
| BstACI | GRCGYC | 2 cut(s) | 1483, 1940 |
| BstAFI | CTTAAG | 1 cut(s) | 865 |
| BstBAI | YACGTR | 2 cut(s) | 390, 1866 |
| BstC8I | GCNNGC | 5 cut(s) | 475, 489, 861, 902, 1963 |
| BstDEI | CTNAG | 7 cut(s) | 272, 492, 528, 992, 1737, 1784, 1921 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 875 |
| BstF5I | GGATG | 9 cut(s) | 195, 202, 325, 796, 1097, 1315, 1535, 1578, 1947 |
| BstFNI | CGCG | 1 cut(s) | 299 |
| BstHHI | GCGC | 1 cut(s) | 1561 |
| BstKTI | GATC | 6 cut(s) | 283, 405, 615, 1356, 1504, 1931 |
| BstMBI | GATC | 6 cut(s) | 280, 402, 612, 1353, 1501, 1928 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 251, 470, 579, 634, 1178, 1556 |
| BstNI | CCWGG | 2 cut(s) | 563, 1189 |
| BstNSI | RCATGY | 1 cut(s) | 166 |
| BstSCI | CCNGG | 2 cut(s) | 561, 1187 |
| BstSLI | GKGCMC | 3 cut(s) | 475, 718, 902 |
| BstSNI | TACGTA | 1 cut(s) | 1866 |
| BstUI | CGCG | 1 cut(s) | 299 |
| BstV1I | GCAGC | 8 cut(s) | 134, 395, 1193, 1324, 1359, 1375, 1622, 1798 |
| BstV2I | GAAGAC | 1 cut(s) | 1908 |
| BstX2I | RGATCY | 2 cut(s) | 1501, 1928 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 394 |
| BstYI | RGATCY | 2 cut(s) | 1501, 1928 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1921 |
| BsuRI | GGCC | 2 cut(s) | 573, 1695 |
| BtsCI | GGATG | 9 cut(s) | 195, 202, 325, 796, 1097, 1315, 1535, 1578, 1947 |
| BtsIMutI | CAGTG | 5 cut(s) | 254, 716, 718, 921, 1134 |
| Cac8I | GCNNGC | 5 cut(s) | 475, 489, 861, 902, 1963 |
| CaiI | CAGNNNCTG | 1 cut(s) | 128 |
| CciI | TCATGA | 1 cut(s) | 1023 |
| CfoI | GCGC | 1 cut(s) | 1561 |
| Cfr13I | GGNCC | 4 cut(s) | 175, 236, 649, 1694 |
| CseI | GACGC | 1 cut(s) | 1472 |
| CsiI | ACCWGGT | 1 cut(s) | 561 |
| Csp6I | GTAC | 3 cut(s) | 391, 1381, 1867 |
| CviAII | CATG | 8 cut(s) | 151, 163, 394, 610, 653, 1024, 1564, 1621 |
| CviQI | GTAC | 3 cut(s) | 391, 1381, 1867 |
| DdeI | CTNAG | 7 cut(s) | 272, 492, 528, 992, 1737, 1784, 1921 |
| DpnI | GATC | 6 cut(s) | 282, 404, 614, 1355, 1503, 1930 |
| DpnII | GATC | 6 cut(s) | 280, 402, 612, 1353, 1501, 1928 |
| DraI | TTTAAA | 2 cut(s) | 33, 219 |
| Eam1104I | CTCTTC | 4 cut(s) | 129, 353, 1296, 1800 |
| EarI | CTCTTC | 4 cut(s) | 129, 353, 1296, 1800 |
| Ecl136II | GAGCTC | 2 cut(s) | 658, 1166 |
| Eco105I | TACGTA | 1 cut(s) | 1866 |
| Eco24I | GRGCYC | 2 cut(s) | 660, 1168 |
| Eco32I | GATATC | 1 cut(s) | 723 |
| Eco47I | GGWCC | 3 cut(s) | 175, 236, 649 |
| Eco53kI | GAGCTC | 2 cut(s) | 658, 1166 |
| Eco57I | CTGAAG | 2 cut(s) | 165, 287 |
| Eco81I | CCTNAGG | 1 cut(s) | 1921 |
| EcoICRI | GAGCTC | 2 cut(s) | 658, 1166 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 875 |
| EcoO109I | RGGNCCY | 2 cut(s) | 175, 236 |
| EcoRII | CCWGG | 2 cut(s) | 561, 1187 |
| EcoRV | GATATC | 1 cut(s) | 723 |
| EcoT38I | GRGCYC | 2 cut(s) | 660, 1168 |
| FaeI | CATG | 8 cut(s) | 154, 166, 397, 613, 656, 1027, 1567, 1624 |
| FaqI | GGGAC | 1 cut(s) | 249 |
| FatI | CATG | 8 cut(s) | 150, 162, 393, 609, 652, 1023, 1563, 1620 |
| FauI | CCCGC | 2 cut(s) | 909, 943 |
| FbaI | TGATCA | 1 cut(s) | 1353 |
| FblI | GTMKAC | 1 cut(s) | 960 |
| Fnu4HI | GCNGC | 8 cut(s) | 123, 409, 1182, 1338, 1348, 1389, 1636, 1812 |
| FokI | GGATG | 9 cut(s) | 202, 209, 332, 783, 1084, 1322, 1542, 1585, 1934 |
| FriOI | GRGCYC | 2 cut(s) | 660, 1168 |
| Fsp4HI | GCNGC | 8 cut(s) | 123, 409, 1182, 1338, 1348, 1389, 1636, 1812 |
| FspBI | CTAG | 5 cut(s) | 117, 872, 1440, 1526, 1683 |
| GlaI | GCGC | 1 cut(s) | 1560 |
| GluI | GCNGC | 8 cut(s) | 123, 409, 1182, 1338, 1348, 1389, 1636, 1812 |
| GsaI | CCCAGC | 1 cut(s) | 357 |
| GsuI | CTGGAG | 1 cut(s) | 1152 |
| HaeIII | GGCC | 2 cut(s) | 573, 1695 |
| HgaI | GACGC | 1 cut(s) | 1472 |
| HhaI | GCGC | 1 cut(s) | 1561 |
| Hin1I | GRCGYC | 2 cut(s) | 1483, 1940 |
| Hin1II | CATG | 8 cut(s) | 154, 166, 397, 613, 656, 1027, 1567, 1624 |
| Hin6I | GCGC | 1 cut(s) | 1559 |
| HinP1I | GCGC | 1 cut(s) | 1559 |
| HindIII | AAGCTT | 1 cut(s) | 1284 |
| HinfI | GANTC | 8 cut(s) | 204, 276, 380, 513, 752, 1157, 1835, 1876 |
| HphI | GGTGA | 6 cut(s) | 101, 275, 446, 547, 1135, 1588 |
| Hpy166II | GTNNAC | 5 cut(s) | 473, 538, 716, 794, 961 |
| Hpy188I | TCNGA | 5 cut(s) | 267, 468, 502, 993, 1177 |
| Hpy188III | TCNNGA | 9 cut(s) | 307, 746, 1024, 1161, 1298, 1487, 1538, 1643, 1880 |
| Hpy8I | GTNNAC | 5 cut(s) | 473, 538, 716, 794, 961 |
| Hpy99I | CGWCG | 1 cut(s) | 1876 |
| HpyCH4III | ACNGT | 6 cut(s) | 689, 703, 713, 910, 1138, 1361 |
| HpyCH4IV | ACGT | 3 cut(s) | 389, 1865, 1940 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 251, 470, 579, 634, 1178, 1556 |
| HpyF3I | CTNAG | 7 cut(s) | 272, 492, 528, 992, 1737, 1784, 1921 |
| HpySE526I | ACGT | 3 cut(s) | 389, 1865, 1940 |
| Hsp92I | GRCGYC | 2 cut(s) | 1483, 1940 |
| Hsp92II | CATG | 8 cut(s) | 154, 166, 397, 613, 656, 1027, 1567, 1624 |
| HspAI | GCGC | 1 cut(s) | 1559 |
| Ksp22I | TGATCA | 1 cut(s) | 1353 |
| Kzo9I | GATC | 6 cut(s) | 280, 402, 612, 1353, 1501, 1928 |
| LguI | GCTCTTC | 1 cut(s) | 129 |
| LmnI | GCTCC | 1 cut(s) | 1171 |
| Lsp1109I | GCAGC | 8 cut(s) | 134, 395, 1193, 1324, 1359, 1375, 1622, 1798 |
| LweI | GCATC | 9 cut(s) | 134, 232, 615, 955, 1060, 1375, 1483, 1520, 1741 |
| MabI | ACCWGGT | 1 cut(s) | 561 |
| MaeI | CTAG | 5 cut(s) | 117, 872, 1440, 1526, 1683 |
| MaeII | ACGT | 3 cut(s) | 389, 1865, 1940 |
| MaeIII | GTNAC | 6 cut(s) | 674, 703, 1123, 1756, 1936, 1941 |
| MalI | GATC | 6 cut(s) | 282, 404, 614, 1355, 1503, 1930 |
| MbiI | CCGCTC | 1 cut(s) | 950 |
| MboI | GATC | 6 cut(s) | 280, 402, 612, 1353, 1501, 1928 |
| MboII | GAAGA | 9 cut(s) | 146, 370, 1079, 1210, 1313, 1531, 1637, 1817, 1908 |
| MflI | RGATCY | 2 cut(s) | 1501, 1928 |
| MhlI | GDGCHC | 6 cut(s) | 475, 660, 718, 902, 1023, 1168 |
| MlyI | GAGTC | 2 cut(s) | 285, 522 |
| MmeI | TCCRAC | 3 cut(s) | 174, 397, 824 |
| MslI | CAYNNNNRTG | 1 cut(s) | 392 |
| MspA1I | CMGCKG | 4 cut(s) | 408, 491, 1337, 1965 |
| MspCI | CTTAAG | 1 cut(s) | 865 |
| MspR9I | CCNGG | 2 cut(s) | 563, 1189 |
| Mva1269I | GAATGC | 2 cut(s) | 1638, 1732 |
| MvaI | CCWGG | 2 cut(s) | 563, 1189 |
| MvnI | CGCG | 1 cut(s) | 299 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 251, 470, 579, 634, 1178, 1556 |
| NdeII | GATC | 6 cut(s) | 280, 402, 612, 1353, 1501, 1928 |
| NlaIII | CATG | 8 cut(s) | 154, 166, 397, 613, 656, 1027, 1567, 1624 |
| NlaIV | GGNNCC | 3 cut(s) | 177, 237, 899 |
| NmeAIII | GCCGAG | 1 cut(s) | 1814 |
| NmuCI | GTSAC | 3 cut(s) | 1123, 1936, 1941 |
| NspI | RCATGY | 1 cut(s) | 166 |
| PagI | TCATGA | 1 cut(s) | 1023 |
| PciI | ACATGT | 1 cut(s) | 162 |
| PciSI | GCTCTTC | 1 cut(s) | 129 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1871 |
| PctI | GAATGC | 2 cut(s) | 1638, 1732 |
| PfeI | GAWTC | 6 cut(s) | 204, 380, 752, 1157, 1835, 1876 |
| PflFI | GACNNNGTC | 1 cut(s) | 647 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 460 |
| PkrI | GCNGC | 8 cut(s) | 124, 410, 1183, 1339, 1349, 1390, 1637, 1813 |
| PleI | GAGTC | 2 cut(s) | 284, 521 |
| PpsI | GAGTC | 2 cut(s) | 284, 521 |
| Ppu21I | YACGTR | 2 cut(s) | 390, 1866 |
| PpuMI | RGGWCCY | 2 cut(s) | 175, 236 |
| PscI | ACATGT | 1 cut(s) | 162 |
| PshBI | ATTAAT | 1 cut(s) | 75 |
| PsiI | TTATAA | 3 cut(s) | 1131, 1554, 1764 |
| Psp124BI | GAGCTC | 2 cut(s) | 660, 1168 |
| Psp5II | RGGWCCY | 2 cut(s) | 175, 236 |
| Psp6I | CCWGG | 2 cut(s) | 561, 1187 |
| PspFI | CCCAGC | 1 cut(s) | 353 |
| PspGI | CCWGG | 2 cut(s) | 561, 1187 |
| PspN4I | GGNNCC | 3 cut(s) | 177, 237, 899 |
| PspPI | GGNCC | 4 cut(s) | 175, 236, 649, 1694 |
| PspPPI | RGGWCCY | 2 cut(s) | 175, 236 |
| PstNI | CAGNNNCTG | 1 cut(s) | 128 |
| PsuI | RGATCY | 2 cut(s) | 1501, 1928 |
| PsyI | GACNNNGTC | 1 cut(s) | 647 |
| PvuII | CAGCTG | 3 cut(s) | 491, 1337, 1965 |
| RsaI | GTAC | 3 cut(s) | 392, 1382, 1868 |
| RsaNI | GTAC | 3 cut(s) | 391, 1381, 1867 |
| RseI | CAYNNNNRTG | 1 cut(s) | 392 |
| SacI | GAGCTC | 2 cut(s) | 660, 1168 |
| SapI | GCTCTTC | 1 cut(s) | 129 |
| SatI | GCNGC | 8 cut(s) | 123, 409, 1182, 1338, 1348, 1389, 1636, 1812 |
| Sau3AI | GATC | 6 cut(s) | 280, 402, 612, 1353, 1501, 1928 |
| Sau96I | GGNCC | 4 cut(s) | 175, 236, 649, 1694 |
| SchI | GAGTC | 2 cut(s) | 285, 522 |
| ScrFI | CCNGG | 2 cut(s) | 563, 1189 |
| SduI | GDGCHC | 6 cut(s) | 475, 660, 718, 902, 1023, 1168 |
| SexAI | ACCWGGT | 1 cut(s) | 561 |
| SfaNI | GCATC | 9 cut(s) | 134, 232, 615, 955, 1060, 1375, 1483, 1520, 1741 |
| SinI | GGWCC | 3 cut(s) | 175, 236, 649 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 392 |
| SmlI | CTYRAG | 3 cut(s) | 305, 865, 1880 |
| SmoI | CTYRAG | 3 cut(s) | 305, 865, 1880 |
| SnaBI | TACGTA | 1 cut(s) | 1866 |
| SsiI | CCGC | 8 cut(s) | 37, 299, 406, 726, 902, 950, 1378, 1754 |
| SspMI | CTAG | 5 cut(s) | 117, 872, 1440, 1526, 1683 |
| SstI | GAGCTC | 2 cut(s) | 660, 1168 |
| StyD4I | CCNGG | 2 cut(s) | 561, 1187 |
| TaaI | ACNGT | 6 cut(s) | 689, 703, 713, 910, 1138, 1361 |
| TaiI | ACGT | 3 cut(s) | 392, 1868, 1943 |
| TaqI | TCGA | 3 cut(s) | 279, 1299, 1874 |
| TfiI | GAWTC | 6 cut(s) | 204, 380, 752, 1157, 1835, 1876 |
| TscAI | CASTG | 5 cut(s) | 261, 718, 723, 928, 1141 |
| TseFI | GTSAC | 3 cut(s) | 1123, 1936, 1941 |
| TseI | GCWGC | 8 cut(s) | 122, 408, 1181, 1337, 1347, 1388, 1635, 1811 |
| Tsp45I | GTSAC | 3 cut(s) | 1123, 1936, 1941 |
| TspRI | CASTG | 5 cut(s) | 261, 718, 723, 928, 1141 |
| Tth111I | GACNNNGTC | 1 cut(s) | 647 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 460 |
| Vha464I | CTTAAG | 1 cut(s) | 865 |
| VneI | GTGCAC | 2 cut(s) | 471, 714 |
| VpaK11BI | GGWCC | 3 cut(s) | 175, 236, 649 |
| VspI | ATTAAT | 1 cut(s) | 75 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 875 |
| XapI | RAATTY | 3 cut(s) | 19, 222, 367 |
| XceI | RCATGY | 1 cut(s) | 166 |
| XmiI | GTMKAC | 1 cut(s) | 960 |
| XspI | CTAG | 5 cut(s) | 117, 872, 1440, 1526, 1683 |
| ZraI | GACGTC | 1 cut(s) | 1941 |