Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8002616.1

Orthogroup ID

OG0010176

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 449

Gene Structure 448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8002616.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 448 bp

atggcgttgatccgttgcttggacgaggctggtatggttggtgaaatgtggaaagccattcaggagatggttcgaagtgcacgcgttatcgatccagctgaattgtctgagattataagaatcttgggaagggctaagatggtaaacaaggcactatctgtcttctaccaaatcaaaggccacaactgcacgccaacagctcatagttacaactccatgatcttaatgctgatgcaagaaggtcatcatgaaaaggtccaggagctctataatgagatgtgtaatgagagtaactgtttcccggacacagtcacatacagtgcactaatatctgcatttgggaaattgggtcgtgatgattctgcaattaggttgtttgatgagatgaaggataacggtttacatccaactgcaaagatttatactaccctattggcaatctttttca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

149

Amino Acids

16.87

Weight (kDa)

5.93

Isoelectric Point (pI)

29.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16010
fragaria_vesca	FvH4_6g31160
malus_domestica	MD17G1195500.v1.1
prunus_persica	Prupe.3G071400_v2.0.a1
pyrus_communis	pycom17g20110
rosa_chinensis	RchiOBHm_Chr2g0137841
rosa_laevigata	RLG00000019680
rosa_multiflora	Rmu_co8002616.1_g000001 Rmu_sc0002170.1_g000007 Rmu_sc0007548.1_g000006
rosa_roxburghii	Rroxscaffold_2G00106770
rosa_rugosa	Rorug02G0346600 Rorug02G0346700 Rorug02G0346800 Rorug02G0346900 Rorug02G0347000
rosa_samantha	Rh2AG393400 Rh2BG400900 Rh2CG380100 Rh2DG415900
rosa_wichuraiana	Rw2G032220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	116
AccII	CGCG	1 cut(s)	84
AclWI	GGATC	2 cut(s)	4, 86
AfiI	CCNNNNNNNGG	1 cut(s)	19
AflIII	ACRYGT	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	3 cut(s)	98, 200, 265
AluI	AGCT	3 cut(s)	98, 200, 265
Alw21I	GWGCWC	3 cut(s)	82, 267, 325
Alw44I	GTGCAC	2 cut(s)	78, 321
AlwI	GGATC	2 cut(s)	4, 86
AoxI	GGCC	1 cut(s)	178
ApaLI	GTGCAC	2 cut(s)	78, 321
AspS9I	GGNCC	1 cut(s)	256
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	53
AsuII	TTCGAA	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	256
BaeGI	GKGCMC	2 cut(s)	82, 325
BanII	GRGCYC	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	154
Bbv12I	GWGCWC	3 cut(s)	82, 267, 325
BccI	CCATC	2 cut(s)	61, 133
BciT130I	CCWGG	1 cut(s)	260
BcnI	CCSGG	1 cut(s)	302
Bme1390I	CCNGG	2 cut(s)	260, 302
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	256
BmrFI	CCNGG	2 cut(s)	260, 302
BmsI	GCATC	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	154
Bpu14I	TTCGAA	1 cut(s)	73
BpuMI	CCSGG	1 cut(s)	302
Bsa29I	ATCGAT	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	260
BseCI	ATCGAT	1 cut(s)	90
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMII	CTCAG	1 cut(s)	99
BseSI	GKGCMC	2 cut(s)	82, 325
BsgI	GTGCAG	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	1 cut(s)	180
BshVI	ATCGAT	1 cut(s)	90
BsiHKAI	GWGCWC	3 cut(s)	82, 267, 325
BsiSI	CCGG	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	19
BsnI	GGCC	1 cut(s)	180
Bsp119I	TTCGAA	1 cut(s)	73
Bsp1286I	GDGCHC	3 cut(s)	82, 267, 325
Bsp143I	GATC	3 cut(s)	9, 91, 219
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	1 cut(s)	100
BspDI	ATCGAT	1 cut(s)	90
BspFNI	CGCG	1 cut(s)	84
BspHI	TCATGA	1 cut(s)	247
BspPI	GGATC	2 cut(s)	4, 86
BspT104I	TTCGAA	1 cut(s)	73
BssMI	GATC	3 cut(s)	9, 91, 219
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	4 cut(s)	296, 310, 320, 398
BstBI	TTCGAA	1 cut(s)	73
BstC8I	GCNNGC	2 cut(s)	82, 191
BstDEI	CTNAG	2 cut(s)	108, 135
BstF5I	GGATG	1 cut(s)	403
BstFNI	CGCG	1 cut(s)	84
BstKTI	GATC	3 cut(s)	12, 94, 222
BstMBI	GATC	3 cut(s)	9, 91, 219
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	2 cut(s)	258, 300
BstSLI	GKGCMC	2 cut(s)	82, 325
BstUI	CGCG	1 cut(s)	84
BstV2I	GAAGAC	1 cut(s)	154
Bsu15I	ATCGAT	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	180
BsuTUI	ATCGAT	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	403
BtsIMutI	CAGTG	1 cut(s)	325
Cac8I	GCNNGC	2 cut(s)	82, 191
CciI	TCATGA	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	256
ClaI	ATCGAT	1 cut(s)	90
CviAII	CATG	2 cut(s)	217, 248
CviJI	RGCY	7 cut(s)	29, 56, 98, 134, 180, 200, 265
CviKI_1	RGCY	7 cut(s)	29, 56, 98, 134, 180, 200, 265
DdeI	CTNAG	2 cut(s)	108, 135
DpnI	GATC	3 cut(s)	11, 93, 221
DpnII	GATC	3 cut(s)	9, 91, 219
Ecl136II	GAGCTC	1 cut(s)	265
Eco24I	GRGCYC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	256
Eco53kI	GAGCTC	1 cut(s)	265
EcoICRI	GAGCTC	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	267
FaeI	CATG	2 cut(s)	220, 251
FaiI	YATR	8 cut(s)	35, 116, 204, 218, 249, 270, 316, 423
FatI	CATG	2 cut(s)	216, 247
FokI	GGATG	1 cut(s)	390
FriOI	GRGCYC	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	180
HapII	CCGG	1 cut(s)	302
Hin1II	CATG	2 cut(s)	220, 251
HinfI	GANTC	2 cut(s)	120, 359
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	4 cut(s)	80, 145, 323, 401
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	3 cut(s)	62, 248, 353
Hpy8I	GTNNAC	4 cut(s)	80, 145, 323, 401
HpyAV	CCTTC	3 cut(s)	123, 233, 382
HpyCH4III	ACNGT	4 cut(s)	296, 310, 320, 398
HpyCH4V	TGCA	7 cut(s)	80, 189, 235, 323, 335, 365, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
HpyF3I	CTNAG	2 cut(s)	108, 135
Hsp92II	CATG	2 cut(s)	220, 251
Kzo9I	GATC	3 cut(s)	9, 91, 219
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	6 cut(s)	15, 47, 108, 245, 272, 315
LweI	GCATC	1 cut(s)	222
MaeIII	GTNAC	3 cut(s)	206, 290, 310
MalI	GATC	3 cut(s)	11, 93, 221
MboI	GATC	3 cut(s)	9, 91, 219
MboII	GAAGA	1 cut(s)	154
MhlI	GDGCHC	3 cut(s)	82, 267, 325
MluCI	AATT	3 cut(s)	101, 344, 366
MluI	ACGCGT	1 cut(s)	82
MmeI	TCCRAC	1 cut(s)	431
MnlI	CCTC	1 cut(s)	19
MseI	TTAA	1 cut(s)	224
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	1 cut(s)	302
MspR9I	CCNGG	2 cut(s)	260, 302
MvaI	CCWGG	1 cut(s)	260
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	186
NciI	CCSGG	1 cut(s)	302
NdeII	GATC	3 cut(s)	9, 91, 219
NlaIII	CATG	2 cut(s)	220, 251
NmuCI	GTSAC	1 cut(s)	310
NspV	TTCGAA	1 cut(s)	73
PagI	TCATGA	1 cut(s)	247
PfeI	GAWTC	2 cut(s)	120, 359
PflFI	GACNNNGTC	1 cut(s)	308
PfoI	TCCNGGA	2 cut(s)	258, 300
PsiI	TTATAA	1 cut(s)	116
Psp124BI	GAGCTC	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspPI	GGNCC	1 cut(s)	256
PsyI	GACNNNGTC	1 cut(s)	308
PvuII	CAGCTG	1 cut(s)	98
SacI	GAGCTC	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	224
Sau3AI	GATC	3 cut(s)	9, 91, 219
Sau96I	GGNCC	1 cut(s)	256
ScrFI	CCNGG	2 cut(s)	260, 302
SduI	GDGCHC	3 cut(s)	82, 267, 325
SetI	ASST	6 cut(s)	100, 202, 244, 258, 267, 374
SfaNI	GCATC	1 cut(s)	222
SfuI	TTCGAA	1 cut(s)	73
SinI	GGWCC	1 cut(s)	256
Sse9I	AATT	3 cut(s)	101, 344, 366
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	2 cut(s)	258, 300
TaaI	ACNGT	4 cut(s)	296, 310, 320, 398
TaqI	TCGA	2 cut(s)	73, 90
TasI	AATT	3 cut(s)	101, 344, 366
TfiI	GAWTC	2 cut(s)	120, 359
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	1 cut(s)	310
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	2 cut(s)	264, 401
TspRI	CASTG	1 cut(s)	325
Tth111I	GACNNNGTC	1 cut(s)	308
VneI	GTGCAC	2 cut(s)	78, 321
VpaK11BI	GGWCC	1 cut(s)	256
XcmI	CCANNNNNNNNNTGG	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.