Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010176

Physical Location & Seq

Genomic Coordinates Forward (+)

30337242 .. 30344150

Gene Structure 6909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00106770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2148 bp

ATGGTTCGTCTTGTTTCCGGGCTGAGCATGTTCACTTTGAAGTTGAAATTAACATTAGTTCCTGTGGTCTTTGTAAACACATGGCTCGACTTGCAGGTTAAAACCTCAGAAAATGAGATAGTTAAGATGTTCCGGTTGCCTAATGCATCGGACAGCTTTCCCATGAGTAGAAATATGCCAGGGAAGGACCCTTCAGTCAGGACATTGGATGACAGGTTCACAAAGATTTTGAAAATTTTCAAGTGGGGGCCTGATGCCGAAAAAGCCTTGGAAGTGCTGAAGCTGAGAGTGGATCATAGGTTGGTTCTCGCGGTTCTCAAGATTGATGTCGAGGCCATTGTTAAGGTTAAGTTTTTCAAGTGGGCAGGGAAGAGAAGGAATTTTCAACACAATTCAACCACATATATGGCGTTGATCCGTTGCTTGGACGAGGCTGGTATGGTTGGTGAAATGTGGAAAGCCATTCAGGAGATGGTTCGGAGTGCCCGTGTTATCGATCCAGCTGAATTGTCTGAGATTATAAGAATCTTGGGAAGGGCTAAGATGGTAAACAAGGCACTATCTGTCTTCTACCAAATCAAAGGCCACAACTGCACGCCAACAGCTCATAGTTACAACTCCATGATCTTAATGCTGATGCAAGAAGGTCATCATGAAAAGGTCCATGAGCTCTATAGTGAGATGTGTAATGAGAGTAGCTGTTTCCCGGACACAGTCACATACAGTGCGCTAATATCTGCATTTGGGAAATTGGGTCGTGATGATTCTGCAATTAGGTTGTTTGATGAGATGAAGGATAACGGTTTACATCCAACTGCAAAGATTTATACTACCCTATTGGCAATCTTTTTCAAGTTGGGCAAGGTTGAGAAAGCTTTAAGTCTAGTTCAGGAGATGAAAGAGAATGGGTGTCCGCCTACTGTTTTTACTTACACTGAATTGATAAAGGGGCTAGGGAAAGCTGGGAGGGTTGAAGATGCTTATGTCATATACAAAAACATGCTGAAGGAGGGTTGTAAGCCTGATGTTGTGCTCATGAACAATTTGATAAACATTTTGGGAAAGGAAGGTCGCATAGAAAATGCTATTAATCTTTTCAATGAGATGGACATTTTGCGTTGCACACCTAATGTGGTGACTTATAACACGATAATTAAAGCTTTATTTGACTCCAAAGCTCCAGCTTCGGTTGCAGCTTCATGGTTTGAGAAGATGAAAGTGAATGGTGTTATTCCGAGCTCTTTTACCTATTCGATTCTGATAGATGGCCTGATCAACAGTCTTGGAAAAGCAAAGCGGTATGAAGCTGCAAATGAGTTATTTCAAGAATTGAAAGAAAACTGTGGACGTGCAAGTGCTAGAGTATATGCTGTGATGATTAAACATTTCGGAAAATGTGGGCGTCTTGATGAAGCTCTGGATCTTTTTCACGAGATGAAGAAACTTGGATGCAATCCGGACGTATATACTTATAATGCCCTCATGTCAGGGATGGTCAGGGCTGGTGGCCCAAAGAGGGCGTTAGAAATGTTTTCAAAGATGAAGCATTCCAAGATTCAACCAGATGCAGTTTCTTATAACACTATTCTTGGTTGTCTCAGTCGAGCTGGCTTGCTTGAAGAGGCTGCAAAGCTGATGAAAGAGATGACTTCAAAAGGTTTTCAATATGATCTCATCACCTACTCATCAATACTTGAGGCAGTTGGCAAGGTTGATGAAGCTCATATGACTTCCTTAAGGGGATCTGGGGGTGGTGCTTTGCAATGTGCAATTCTTAGTCGAACCTTCAAAGTCTTAAGAGTTTCAGACTTTCAGCTTTCAGAAGAGGAGGAAGTTGAGGTTCCTGTCCCAAAAGAGCATCCAAAGGAGGCTACTAAGATGGAGAGTCTTGAGACCCCCAGTGTTGTGGCTCCCCAACTGCTGATGAGGTGGAAGCTGGAGCCAGTTCACAGTGCGAAGACATCTTTGATTTGGAGATGCAGCATCAGTAGATGGAAGTCCACTTTGAAGGAAGAGTTTCTAAGGCGCATGACAATTAGCTCAGAACATCAGTTGGTCCAAGCAACCACATTGTTGATTCAAATGGAATGGTGGCAATGTGCTGCAAGAGGATTACTACCACACTTGCAAACTTATATTTTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

715

Amino Acids

80.66

Weight (kDa)

9.03

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	178 - 328	7.7e-10	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	200 - 250	4.3e-11	PPR repeat family
PPR_1	PF12854	233 - 265	8.6e-10	PPR repeat
PPR_2	PF13041	236 - 279	1.1e-09	PPR repeat family
PPR	PF01535	239 - 269	6.8e-08	PPR repeat
PPR_3	PF13812	259 - 320	8.1e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	271 - 320	4.7e-14	PPR repeat family
PPR	PF01535	275 - 304	1.5e-06	PPR repeat
PPR_1	PF12854	302 - 334	3.6e-08	PPR repeat
PPR_2	PF13041	306 - 344	8.4e-10	PPR repeat family
PPR_3	PF13812	330 - 388	1.7e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	338 - 369	5.9e-07	PPR repeat
PPR_2	PF13041	341 - 389	4.3e-15	PPR repeat family
PPR_3	PF13812	365 - 422	2.2e-06	Pentatricopeptide repeat domain
PPR_long	PF17177	396 - 536	2.2e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	398 - 425	2.3e-06	PPR repeat family
PPR_2	PF13041	455 - 499	1.7e-15	PPR repeat family
PPR	PF01535	455 - 484	2.6e-07	PPR repeat
PPR_long	PF17177	470 - 568	1.8e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	475 - 532	1e-14	Pentatricopeptide repeat domain
PPR_1	PF12854	483 - 515	8.6e-08	PPR repeat
PPR_2	PF13041	486 - 534	7.7e-14	PPR repeat family
PPR	PF01535	489 - 518	9.5e-06	PPR repeat
PPR_1	PF12854	519 - 550	1.8e-07	PPR repeat
PPR_2	PF13041	521 - 567	9.4e-12	PPR repeat family
PPR	PF01535	524 - 554	4.8e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16010
fragaria_vesca	FvH4_6g31160
malus_domestica	MD17G1195500.v1.1
prunus_persica	Prupe.3G071400_v2.0.a1
pyrus_communis	pycom17g20110
rosa_chinensis	RchiOBHm_Chr2g0137841
rosa_laevigata	RLG00000019680
rosa_multiflora	Rmu_co8002616.1_g000001 Rmu_sc0002170.1_g000007 Rmu_sc0007548.1_g000006
rosa_roxburghii	Rroxscaffold_2G00106770
rosa_rugosa	Rorug02G0346600 Rorug02G0346700 Rorug02G0346800 Rorug02G0346900 Rorug02G0347000
rosa_samantha	Rh2AG393400 Rh2BG400900 Rh2CG380100 Rh2DG415900
rosa_wichuraiana	Rw2G032220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	521, 1143, 1473, 1578
AasI	GACNNNNNNGTC	1 cut(s)	194
Acc36I	ACCTGC	1 cut(s)	85
AccII	CGCG	1 cut(s)	311
AccIII	TCCGGA	1 cut(s)	1456
AciI	CCGC	3 cut(s)	311, 914, 1297
AclWI	GGATC	5 cut(s)	300, 409, 491, 1428, 1750
AcsI	RAATTY	2 cut(s)	234, 379
AcuI	CTGAAG	3 cut(s)	177, 299, 1025
AcyI	GRCGYC	1 cut(s)	1402
AfiI	CCNNNNNNNGG	2 cut(s)	424, 1516
AflII	CTTAAG	2 cut(s)	1735, 1795
AjiI	CACGTC	1 cut(s)	1349
AjnI	CCWGG	1 cut(s)	178
AloI	GAACNNNNNNTCC	2 cut(s)	200, 232
Alw21I	GWGCWC	3 cut(s)	672, 1035, 1241
Alw26I	GTCTC	2 cut(s)	1601, 1886
AlwI	GGATC	5 cut(s)	300, 409, 491, 1428, 1750
Aor13HI	TCCGGA	1 cut(s)	1456
AoxI	GGCC	5 cut(s)	248, 333, 583, 1267, 1507
ApeKI	GCWGC	5 cut(s)	1193, 1307, 1625, 1980, 2102
ApoI	RAATTY	2 cut(s)	234, 379
AseI	ATTAAT	1 cut(s)	1089
Asp700I	GAANNNNTTC	2 cut(s)	236, 2016
AspLEI	GCGC	2 cut(s)	730, 2028
AspS9I	GGNCC	5 cut(s)	187, 248, 661, 1508, 2056
AsuC2I	CCSGG	2 cut(s)	19, 707
AsuHPI	GGTGA	3 cut(s)	458, 1147, 1669
AvaII	GGWCC	3 cut(s)	187, 661, 2056
BaeGI	GKGCMC	1 cut(s)	487
BanII	GRGCYC	2 cut(s)	672, 1241
BauI	CACGAG	1 cut(s)	1430
BbsI	GAAGAC	2 cut(s)	559, 1964
Bbv12I	GWGCWC	3 cut(s)	672, 1035, 1241
BbvI	GCAGC	5 cut(s)	1205, 1294, 1612, 1992, 2089
BccI	CCATC	7 cut(s)	466, 538, 1099, 1259, 1486, 1873, 1986
BciT130I	CCWGG	1 cut(s)	180
BclI	TGATCA	1 cut(s)	1272
BcnI	CCSGG	2 cut(s)	19, 707
BcoDI	GTCTC	2 cut(s)	1601, 1886
BfaI	CTAG	3 cut(s)	884, 953, 1359
BfmI	CTRYAG	1 cut(s)	673
BfrI	CTTAAG	2 cut(s)	1735, 1795
BfuAI	ACCTGC	1 cut(s)	85
BisI	GCNGC	5 cut(s)	1194, 1308, 1626, 1981, 2103
BlpI	GCTNAGC	1 cut(s)	23
BlsI	GCNGC	5 cut(s)	1195, 1309, 1627, 1982, 2104
Bme1390I	CCNGG	3 cut(s)	19, 180, 707
Bme18I	GGWCC	3 cut(s)	187, 661, 2056
BmgBI	CACGTC	1 cut(s)	1349
BmgT120I	GGNCC	5 cut(s)	187, 248, 661, 1508, 2056
BmiI	GGNNCC	5 cut(s)	189, 249, 1842, 1911, 1941
BmrFI	CCNGG	3 cut(s)	19, 180, 707
BmrI	ACTGGG	1 cut(s)	1893
BmsI	GCATC	9 cut(s)	155, 244, 627, 967, 1439, 1555, 1867, 1967, 1992
BmuI	ACTGGG	1 cut(s)	1893
BpiI	GAAGAC	2 cut(s)	559, 1964
BpmI	CTGGAG	2 cut(s)	1164, 1958
Bpu1102I	GCTNAGC	1 cut(s)	23
BpuEI	CTTGAG	3 cut(s)	302, 1715, 1910
BpuMI	CCSGG	2 cut(s)	19, 707
Bsa29I	ATCGAT	1 cut(s)	495
BsaHI	GRCGYC	1 cut(s)	1402
BsaI	GGTCTC	1 cut(s)	1886
BsaJI	CCNNGG	2 cut(s)	179, 267
BsaWI	WCCGGW	2 cut(s)	132, 1456
BsaXI	ACNNNNNCTCC	2 cut(s)	472, 502
Bsc4I	CCNNNNNNNGG	2 cut(s)	424, 1516
Bse1I	ACTGG	2 cut(s)	1899, 1943
Bse3DI	GCAATG	2 cut(s)	1769, 2102
BseAI	TCCGGA	1 cut(s)	1456
BseBI	CCWGG	1 cut(s)	180
BseCI	ATCGAT	1 cut(s)	495
BseDI	CCNNGG	2 cut(s)	179, 267
BseGI	GGATG	5 cut(s)	214, 808, 1454, 1497, 1858
BseLI	CCNNNNNNNGG	2 cut(s)	424, 1516
BseMI	GCAATG	2 cut(s)	1769, 2102
BseMII	CTCAG	6 cut(s)	14, 120, 275, 504, 1612, 2055
BseNI	ACTGG	2 cut(s)	1899, 1943
BseRI	GAGGAG	1 cut(s)	1841
BseSI	GKGCMC	1 cut(s)	487
BseXI	GCAGC	5 cut(s)	1205, 1294, 1612, 1992, 2089
BseYI	CCCAGC	1 cut(s)	962
BsgI	GTGCAG	1 cut(s)	577
Bsh1236I	CGCG	1 cut(s)	311
BshFI	GGCC	5 cut(s)	250, 335, 585, 1269, 1509
BshVI	ATCGAT	1 cut(s)	495
BsiHKAI	GWGCWC	3 cut(s)	672, 1035, 1241
BsiSI	CCGG	4 cut(s)	18, 133, 707, 1457
BslFI	GGGAC	1 cut(s)	1832
BslI	CCNNNNNNNGG	2 cut(s)	424, 1516
BsmAI	GTCTC	2 cut(s)	1601, 1886
BsmFI	GGGAC	1 cut(s)	1832
BsmI	GAATGC	1 cut(s)	1546
BsnI	GGCC	5 cut(s)	250, 335, 585, 1269, 1509
Bso31I	GGTCTC	1 cut(s)	1886
Bsp1286I	GDGCHC	4 cut(s)	487, 672, 1035, 1241
Bsp13I	TCCGGA	1 cut(s)	1456
Bsp143I	GATC	8 cut(s)	292, 414, 496, 624, 1272, 1420, 1669, 1742
Bsp1720I	GCTNAGC	1 cut(s)	23
BspACI	CCGC	3 cut(s)	311, 914, 1297
BspANI	GGCC	5 cut(s)	250, 335, 585, 1269, 1509
BspCNI	CTCAG	6 cut(s)	15, 119, 276, 505, 1611, 2054
BspDI	ATCGAT	1 cut(s)	495
BspEI	TCCGGA	1 cut(s)	1456
BspFNI	CGCG	1 cut(s)	311
BspHI	TCATGA	2 cut(s)	652, 1035
BspLI	GGNNCC	5 cut(s)	189, 249, 1842, 1911, 1941
BspMI	ACCTGC	1 cut(s)	85
BspPI	GGATC	5 cut(s)	300, 409, 491, 1428, 1750
BspTI	CTTAAG	2 cut(s)	1735, 1795
BspTNI	GGTCTC	1 cut(s)	1886
BsrDI	GCAATG	2 cut(s)	1769, 2102
BsrI	ACTGG	2 cut(s)	1899, 1943
BssECI	CCNNGG	2 cut(s)	179, 267
BssMI	GATC	8 cut(s)	292, 414, 496, 624, 1272, 1420, 1669, 1742
BssNI	GRCGYC	1 cut(s)	1402
BssSI	CACGAG	1 cut(s)	1430
BssT1I	CCWWGG	1 cut(s)	267
Bst2BI	CACGAG	1 cut(s)	1430
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	7 cut(s)	715, 725, 803, 922, 1280, 1343, 1952
Bst6I	CTCTTC	4 cut(s)	365, 1614, 1818, 2007
BstACI	GRCGYC	1 cut(s)	1402
BstAFI	CTTAAG	2 cut(s)	1735, 1795
BstC8I	GCNNGC	3 cut(s)	596, 1609, 1613
BstF5I	GGATG	5 cut(s)	214, 808, 1454, 1497, 1858
BstFNI	CGCG	1 cut(s)	311
BstHHI	GCGC	2 cut(s)	730, 2028
BstKTI	GATC	8 cut(s)	295, 417, 499, 627, 1275, 1423, 1672, 1745
BstMAI	GTCTC	2 cut(s)	1601, 1886
BstMBI	GATC	8 cut(s)	292, 414, 496, 624, 1272, 1420, 1669, 1742
BstMWI	GCNNNNNNNGC	4 cut(s)	91, 263, 591, 1190
BstNI	CCWGG	1 cut(s)	180
BstNSI	RCATGY	2 cut(s)	31, 1003
BstSCI	CCNGG	3 cut(s)	17, 178, 705
BstSFI	CTRYAG	1 cut(s)	673
BstSLI	GKGCMC	1 cut(s)	487
BstUI	CGCG	1 cut(s)	311
BstV1I	GCAGC	5 cut(s)	1205, 1294, 1612, 1992, 2089
BstV2I	GAAGAC	2 cut(s)	559, 1964
BstX2I	RGATCY	2 cut(s)	1420, 1742
BstXI	CCANNNNNNTGG	2 cut(s)	406, 1906
BstYI	RGATCY	2 cut(s)	1420, 1742
Bsu15I	ATCGAT	1 cut(s)	495
BsuRI	GGCC	5 cut(s)	250, 335, 585, 1269, 1509
BsuTUI	ATCGAT	1 cut(s)	495
BtrI	CACGTC	1 cut(s)	1349
BtsCI	GGATG	5 cut(s)	214, 808, 1454, 1497, 1858
BtsIMutI	CAGTG	4 cut(s)	730, 933, 1906, 1957
BveI	ACCTGC	1 cut(s)	85
Cac8I	GCNNGC	3 cut(s)	596, 1609, 1613
CciI	TCATGA	2 cut(s)	652, 1035
CfoI	GCGC	2 cut(s)	730, 2028
Cfr13I	GGNCC	5 cut(s)	187, 248, 661, 1508, 2056
ClaI	ATCGAT	1 cut(s)	495
CseI	GACGC	1 cut(s)	1391
DpnI	GATC	8 cut(s)	294, 416, 498, 626, 1274, 1422, 1671, 1744
DpnII	GATC	8 cut(s)	292, 414, 496, 624, 1272, 1420, 1669, 1742
DrdI	GACNNNNNNGTC	1 cut(s)	194
DseDI	GACNNNNNNGTC	1 cut(s)	194
Eam1104I	CTCTTC	4 cut(s)	365, 1614, 1818, 2007
EarI	CTCTTC	4 cut(s)	365, 1614, 1818, 2007
EciI	GGCGGA	1 cut(s)	903
Ecl136II	GAGCTC	2 cut(s)	670, 1239
Eco130I	CCWWGG	1 cut(s)	267
Eco24I	GRGCYC	2 cut(s)	672, 1241
Eco31I	GGTCTC	1 cut(s)	1886
Eco47I	GGWCC	3 cut(s)	187, 661, 2056
Eco53kI	GAGCTC	2 cut(s)	670, 1239
Eco57I	CTGAAG	3 cut(s)	177, 299, 1025
EcoICRI	GAGCTC	2 cut(s)	670, 1239
EcoO109I	RGGNCCY	2 cut(s)	187, 248
EcoRII	CCWGG	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	267
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	2 cut(s)	672, 1241
ErhI	CCWWGG	1 cut(s)	267
FaqI	GGGAC	1 cut(s)	1832
FauNDI	CATATG	1 cut(s)	1725
FbaI	TGATCA	1 cut(s)	1272
Fnu4HI	GCNGC	5 cut(s)	1194, 1308, 1626, 1981, 2103
FokI	GGATG	5 cut(s)	221, 795, 1461, 1504, 1845
FriOI	GRGCYC	2 cut(s)	672, 1241
Fsp4HI	GCNGC	5 cut(s)	1194, 1308, 1626, 1981, 2103
FspBI	CTAG	3 cut(s)	884, 953, 1359
GlaI	GCGC	2 cut(s)	729, 2027
GluI	GCNGC	5 cut(s)	1194, 1308, 1626, 1981, 2103
GsaI	CCCAGC	1 cut(s)	966
GsuI	CTGGAG	2 cut(s)	1164, 1958
HaeIII	GGCC	5 cut(s)	250, 335, 585, 1269, 1509
HapII	CCGG	4 cut(s)	18, 133, 707, 1457
HgaI	GACGC	1 cut(s)	1391
HhaI	GCGC	2 cut(s)	730, 2028
Hin1I	GRCGYC	1 cut(s)	1402
Hin6I	GCGC	2 cut(s)	728, 2026
HinP1I	GCGC	2 cut(s)	728, 2026
HindIII	AAGCTT	2 cut(s)	873, 1158
HinfI	GANTC	7 cut(s)	525, 764, 1169, 1255, 1555, 1885, 2077
HpaII	CCGG	4 cut(s)	18, 133, 707, 1457
HphI	GGTGA	3 cut(s)	458, 1147, 1669
Hpy166II	GTNNAC	8 cut(s)	33, 76, 219, 550, 806, 1346, 1948, 2001
Hpy8I	GTNNAC	8 cut(s)	33, 76, 219, 550, 806, 1346, 1948, 2001
HpyCH4III	ACNGT	7 cut(s)	715, 725, 803, 922, 1280, 1343, 1952
HpyCH4IV	ACGT	2 cut(s)	1348, 1461
HpyF10VI	GCNNNNNNNGC	4 cut(s)	91, 263, 591, 1190
HpySE526I	ACGT	2 cut(s)	1348, 1461
Hsp92I	GRCGYC	1 cut(s)	1402
HspAI	GCGC	2 cut(s)	728, 2026
Kpn2I	TCCGGA	1 cut(s)	1456
Ksp22I	TGATCA	1 cut(s)	1272
Kzo9I	GATC	8 cut(s)	292, 414, 496, 624, 1272, 1420, 1669, 1742
LmnI	GCTCC	3 cut(s)	1183, 1915, 1939
Lsp1109I	GCAGC	5 cut(s)	1205, 1294, 1612, 1992, 2089
LweI	GCATC	9 cut(s)	155, 244, 627, 967, 1439, 1555, 1867, 1967, 1992
MaeI	CTAG	3 cut(s)	884, 953, 1359
MaeII	ACGT	2 cut(s)	1348, 1461
MaeIII	GTNAC	3 cut(s)	611, 715, 1135
MalI	GATC	8 cut(s)	294, 416, 498, 626, 1274, 1422, 1671, 1744
MboI	GATC	8 cut(s)	292, 414, 496, 624, 1272, 1420, 1669, 1742
MboII	GAAGA	9 cut(s)	382, 559, 986, 1222, 1450, 1631, 1835, 1969, 2024
MflI	RGATCY	2 cut(s)	1420, 1742
MhlI	GDGCHC	4 cut(s)	487, 672, 1035, 1241
MlyI	GAGTC	2 cut(s)	1163, 1894
MmeI	TCCRAC	1 cut(s)	836
Mph1103I	ATGCAT	1 cut(s)	148
MroI	TCCGGA	1 cut(s)	1456
MroXI	GAANNNNTTC	2 cut(s)	236, 2016
MslI	CAYNNNNRTG	1 cut(s)	404
MspA1I	CMGCKG	1 cut(s)	503
MspCI	CTTAAG	2 cut(s)	1735, 1795
MspI	CCGG	4 cut(s)	18, 133, 707, 1457
MspR9I	CCNGG	3 cut(s)	19, 180, 707
Mva1269I	GAATGC	1 cut(s)	1546
MvaI	CCWGG	1 cut(s)	180
MvnI	CGCG	1 cut(s)	311
MwoI	GCNNNNNNNGC	4 cut(s)	91, 263, 591, 1190
NciI	CCSGG	2 cut(s)	19, 707
NdeI	CATATG	1 cut(s)	1725
NdeII	GATC	8 cut(s)	292, 414, 496, 624, 1272, 1420, 1669, 1742
NlaIV	GGNNCC	5 cut(s)	189, 249, 1842, 1911, 1941
NmuCI	GTSAC	2 cut(s)	715, 1135
NsiI	ATGCAT	1 cut(s)	148
NspI	RCATGY	2 cut(s)	31, 1003
PagI	TCATGA	2 cut(s)	652, 1035
PcsI	WCGNNNNNNNCGW	1 cut(s)	484
PctI	GAATGC	1 cut(s)	1546
PdmI	GAANNNNTTC	2 cut(s)	236, 2016
PfeI	GAWTC	5 cut(s)	525, 764, 1255, 1555, 2077
PflFI	GACNNNGTC	1 cut(s)	713
PfoI	TCCNGGA	1 cut(s)	705
PkrI	GCNGC	5 cut(s)	1195, 1309, 1627, 1982, 2104
PleI	GAGTC	2 cut(s)	1163, 1893
PpsI	GAGTC	2 cut(s)	1163, 1893
PpuMI	RGGWCCY	1 cut(s)	187
PshBI	ATTAAT	1 cut(s)	1089
PsiI	TTATAA	4 cut(s)	521, 1143, 1473, 1578
Psp124BI	GAGCTC	2 cut(s)	672, 1241
Psp5II	RGGWCCY	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	178
PspFI	CCCAGC	1 cut(s)	962
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	5 cut(s)	189, 249, 1842, 1911, 1941
PspPI	GGNCC	5 cut(s)	187, 248, 661, 1508, 2056
PspPPI	RGGWCCY	1 cut(s)	187
PsuI	RGATCY	2 cut(s)	1420, 1742
PsyI	GACNNNGTC	1 cut(s)	713
PvuII	CAGCTG	1 cut(s)	503
RseI	CAYNNNNRTG	1 cut(s)	404
SacI	GAGCTC	2 cut(s)	672, 1241
SatI	GCNGC	5 cut(s)	1194, 1308, 1626, 1981, 2103
Sau3AI	GATC	8 cut(s)	292, 414, 496, 624, 1272, 1420, 1669, 1742
Sau96I	GGNCC	5 cut(s)	187, 248, 661, 1508, 2056
SchI	GAGTC	2 cut(s)	1163, 1894
ScrFI	CCNGG	3 cut(s)	19, 180, 707
SduI	GDGCHC	4 cut(s)	487, 672, 1035, 1241
SfaNI	GCATC	9 cut(s)	155, 244, 627, 967, 1439, 1555, 1867, 1967, 1992
SfcI	CTRYAG	1 cut(s)	673
SinI	GGWCC	3 cut(s)	187, 661, 2056
SmiMI	CAYNNNNRTG	1 cut(s)	404
SmlI	CTYRAG	5 cut(s)	317, 1694, 1735, 1795, 1889
SmoI	CTYRAG	5 cut(s)	317, 1694, 1735, 1795, 1889
SsiI	CCGC	3 cut(s)	311, 914, 1297
SspMI	CTAG	3 cut(s)	884, 953, 1359
SstI	GAGCTC	2 cut(s)	672, 1241
StyD4I	CCNGG	3 cut(s)	17, 178, 705
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	7 cut(s)	715, 725, 803, 922, 1280, 1343, 1952
TaiI	ACGT	2 cut(s)	1351, 1464
TaqI	TCGA	6 cut(s)	87, 330, 495, 1253, 1603, 1780
TfiI	GAWTC	5 cut(s)	525, 764, 1255, 1555, 2077
TscAI	CASTG	4 cut(s)	730, 940, 1906, 1957
TseFI	GTSAC	2 cut(s)	715, 1135
TseI	GCWGC	5 cut(s)	1193, 1307, 1625, 1980, 2102
Tsp45I	GTSAC	2 cut(s)	715, 1135
TspGWI	ACGGA	1 cut(s)	407
TspRI	CASTG	4 cut(s)	730, 940, 1906, 1957
Tth111I	GACNNNGTC	1 cut(s)	713
Vha464I	CTTAAG	2 cut(s)	1735, 1795
VpaK11BI	GGWCC	3 cut(s)	187, 661, 2056
VspI	ATTAAT	1 cut(s)	1089
XapI	RAATTY	2 cut(s)	234, 379
XceI	RCATGY	2 cut(s)	31, 1003
XcmI	CCANNNNNNNNNTGG	1 cut(s)	469
XmnI	GAANNNNTTC	2 cut(s)	236, 2016
XspI	CTAG	3 cut(s)	884, 953, 1359
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.