RchiOBHm_Chr2g0137841

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0010176
Physical Location & Seq
Reverse (-)
55617787 .. 55623777
5991 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50855

Sequence Viewer

Length: 1938 bp
ATGGCCAAATTGATTGCCAAGTCGGTTGCTTCAACTCGATCGATATCAACCTCCACTCCTCTCTCTCAGAGACTTAATCAAACAGAAAATGAGATAGTTAAGATGTTCCGGTTGCCTAATGCATCGGACAGCTTTCCCATGAGTAGAAATATGCCAGGGAAGGACCCTTCTGTGAGGACATTGGATGACAGGTTCACAAAGATTTTGAAAATTTTCAAGTGGGGGCCTGATGCCGAAAAGGCCTTGGAAGTGCTGAAGCTGAGAGTGGATCATAGGTTGGTTCTCGCGGTTCTCAAGATTGATGTCGAGGCCATTGTTAAGGTTAAGTTTTTCAAGTGGGTTGGGAAGAGAAGGAATTTCCAACACAATTCAACCACATATATGGGGTTGATCCGTTGCTTGGACGAGGCTGGTATGGTTGGTGAAATGTGGAAAGCCATTCAGGAGATGGTTCGAAGTGCACGTGTTATCGATCCAGCTGAATTGTCTGAGATTATAAGAATCTTGGGAAGGGCTAAGATGGTAAACAAGGCACTATCTGTCTTCTACCAAATCAAAGGCCACAACTGCACCCCAACAGCTCATAGTTACAACTCCATGATCTTAATGCTGATGCAAGAAGGTCATCATGAAAAGGTCCATGAGCTCTATAATGAGATGTGTAATGAGAGTAACTGTTTCCCGGACACAGTCACATACAGTGCACTAATATCTGCATTTGGGAAATTGGGTCGTGATGATTCTGCAATTAGGTTGTTTGATGAGATGAAGGATAACGGTTTACATCCAACTGCAAAGATTTATACTACCCTATTGGCAATCTTTTTCAAGTTGGGCAAGGTTGAGAAAGCTTTAAGTCTAGTTCAGGAGATGAAAGAGAATGGGTGTCCGCCTACTGTTTTTACTTACACTGAATTGATAAAGGGGCTAGGGAAAGCTGGGAGGGTTGAAGATGCTTATGTCATGTACAAAAACATGCTGAAGGAGGGTTGTAAGCCTGATGTTGTGCTCATGAACAATTTGATAAACATTTTGGGAAAGGAAGGTCGCATAGAAAATGCTATTAATCTTTTCAATGAGATGGACATTTTGCGTTGCACACCTAATGTGGTGACTTATAACACGATAATTAAAGCTTTATTTGATTCCAAAGCTCCAGCTTCGGTTGCAGCTTCATGGTTTGAGAAGATGAAAGTGAATGGTGTTATTCCGAGCTCTTTTACCTATTCGATTCTGATAGATGGTTTTTGCAAAACAAATAGAGTTGAGAAAGCTTTGTTGCTTCTTGAAGAGATGGATGAAAAGGGGTTCCCCCCTTGTCCAGCTGCGTATTGCAGCCTGATCAACAGTCTTGGAAAAGCAAAGCGGTATGAAGCTGCAAATGAGTTATTTCAAGAATTGAAAGAAAACTGTGGACATGCAAGTGCTAGAGTATATGCCGTGATGATTAAACATTTCGGAAAATGTGGGCGTCTTGATGAAGCTCTGGATCTTTTTCACGAGATGAAGAAACTTGGATGCAATCCGGATGTATATACTTATAATGCCCTCATGTCAGGGATGGTCAGGGCTGGTATGATAGATGAGGCACTTTCCTTGCTTAAAACCATGGAAGAAAGGGGCTGTGTTGCAGACATAAACTCACAAAACATCATTTTAAATGGCTTGGCTAGGGCAGGTGGCCCAAAGAGGGCTTTAGAAATGTTTTCAAAGATGAAGCATTCCAAGATTCAACCAGATGCAGTTTCTTATAACACTATTCTTGGTTGTCTCAGTCGAGCTGGCTTGCTTGAAGAGGCTGCAAAGCTGATGAAAGAGATGACTTCAAAAGGTTTTCAATATGATCTCATCACCTACTCATCAATACTTGAGGCAGTCGGCAAGGTTGATGAAGCTCATATGACTTCCTTAAGGGGATCTGGAAACACGCTCTCTTAA

Protein Analysis

645

Amino Acids

72.11

Weight (kDa)

8.84

Isoelectric Point (pI)

28.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 171 - 283 4.7e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 192 - 242 3.9e-12 PPR repeat family
PPR_1 PF12854 225 - 257 4.3e-10 PPR repeat
PPR_2 PF13041 228 - 271 9.4e-10 PPR repeat family
TPR_24 PF23276 230 - 326 7e-06 Fungal tetratrico peptide repeats
PPR PF01535 231 - 261 6e-08 PPR repeat
PPR_long PF17177 248 - 350 7e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 251 - 312 7.1e-12 Pentatricopeptide repeat domain
PPR_2 PF13041 263 - 312 4.2e-14 PPR repeat family
PPR PF01535 267 - 296 1.4e-06 PPR repeat
PPR_1 PF12854 294 - 326 1.2e-08 PPR repeat
PPR_2 PF13041 300 - 336 5.2e-09 PPR repeat family
PPR_3 PF13812 324 - 380 2.7e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 330 - 361 5.2e-07 PPR repeat
PPR_2 PF13041 333 - 381 3.8e-15 PPR repeat family
PPR_3 PF13812 357 - 415 1.3e-06 Pentatricopeptide repeat domain
TPR_24 PF23276 389 - 501 1.1e-08 Fungal tetratrico peptide repeats
PPR_2 PF13041 390 - 418 5.2e-08 PPR repeat family
PPR_1 PF12854 400 - 432 5.7e-11 PPR repeat
PPR PF01535 407 - 437 2.9e-08 PPR repeat
PPR_2 PF13041 412 - 451 7.7e-07 PPR repeat family
PPR PF01535 478 - 507 2.3e-07 PPR repeat
PPR_2 PF13041 478 - 521 2.8e-15 PPR repeat family
PPR_3 PF13812 498 - 554 5.6e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 506 - 538 8.3e-10 PPR repeat
PPR_2 PF13041 511 - 558 1.2e-11 PPR repeat family
PPR PF01535 512 - 542 1.3e-08 PPR repeat
PPR_3 PF13812 532 - 590 3.7e-09 Pentatricopeptide repeat domain
PPR_2 PF13041 546 - 592 4.9e-10 PPR repeat family
PPR_1 PF12854 577 - 608 1.6e-07 PPR repeat
PPR_2 PF13041 579 - 625 8.3e-12 PPR repeat family
PPR PF01535 582 - 612 4.3e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 497, 1119, 1542, 1752
AarI CACCTGC 1 cut(s) 1667
Acc36I ACCTGC 1 cut(s) 1667
AccII CGCG 1 cut(s) 287
AccIII TCCGGA 1 cut(s) 1525
AciI CCGC 3 cut(s) 287, 890, 1366
AclWI GGATC 5 cut(s) 276, 385, 467, 1497, 1924
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 210, 355
AcuI CTGAAG 2 cut(s) 275, 1001
AcvI CACGTG 1 cut(s) 464
AcyI GRCGYC 1 cut(s) 1471
AfaI GTAC 1 cut(s) 968
AfiI CCNNNNNNNGG 2 cut(s) 400, 1690
AflII CTTAAG 1 cut(s) 1909
AflIII ACRYGT 1 cut(s) 463
AjnI CCWGG 1 cut(s) 154
AloI GAACNNNNNNTCC 2 cut(s) 176, 208
Alw21I GWGCWC 5 cut(s) 463, 648, 706, 1011, 1217
Alw26I GTCTC 2 cut(s) 64, 1775
Alw44I GTGCAC 2 cut(s) 459, 702
AlwI GGATC 5 cut(s) 276, 385, 467, 1497, 1924
Aor13HI TCCGGA 1 cut(s) 1525
AoxI GGCC 6 cut(s) 3, 224, 240, 309, 559, 1681
ApaLI GTGCAC 2 cut(s) 459, 702
ApeKI GCWGC 5 cut(s) 1169, 1325, 1335, 1376, 1799
ApoI RAATTY 2 cut(s) 210, 355
AseI ATTAAT 1 cut(s) 1065
Asp700I GAANNNNTTC 1 cut(s) 212
AspS9I GGNCC 4 cut(s) 163, 224, 637, 1682
AsuC2I CCSGG 1 cut(s) 683
AsuHPI GGTGA 3 cut(s) 434, 1123, 1843
AsuII TTCGAA 1 cut(s) 454
AvaII GGWCC 2 cut(s) 163, 637
BaeGI GKGCMC 2 cut(s) 463, 706
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 648, 1217
BauI CACGAG 1 cut(s) 1499
BbrPI CACGTG 1 cut(s) 464
BbsI GAAGAC 1 cut(s) 535
Bbv12I GWGCWC 5 cut(s) 463, 648, 706, 1011, 1217
BbvI GCAGC 5 cut(s) 1181, 1312, 1347, 1363, 1786
BccI CCATC 6 cut(s) 442, 514, 1075, 1235, 1288, 1555
BceAI ACGGC 1 cut(s) 1424
BciT130I CCWGG 1 cut(s) 156
BclI TGATCA 1 cut(s) 1341
BcnI CCSGG 1 cut(s) 683
BcoDI GTCTC 2 cut(s) 64, 1775
BfaI CTAG 4 cut(s) 860, 929, 1428, 1671
BfrI CTTAAG 1 cut(s) 1909
BfuAI ACCTGC 1 cut(s) 1667
BglI GCCNNNNNGGC 1 cut(s) 239
BisI GCNGC 5 cut(s) 1170, 1326, 1336, 1377, 1800
BlsI GCNGC 5 cut(s) 1171, 1327, 1337, 1378, 1801
Bme1390I CCNGG 2 cut(s) 156, 683
Bme18I GGWCC 2 cut(s) 163, 637
BmgT120I GGNCC 4 cut(s) 163, 224, 637, 1682
BmiI GGNNCC 3 cut(s) 165, 225, 1310
BmrFI CCNGG 2 cut(s) 156, 683
BmsI GCATC 6 cut(s) 131, 220, 603, 943, 1508, 1729
BpiI GAAGAC 1 cut(s) 535
BpmI CTGGAG 1 cut(s) 1140
Bpu14I TTCGAA 1 cut(s) 454
BpuEI CTTGAG 2 cut(s) 278, 1889
BpuMI CCSGG 1 cut(s) 683
Bsa29I ATCGAT 2 cut(s) 41, 471
BsaAI YACGTR 1 cut(s) 464
BsaBI GATNNNNATC 1 cut(s) 43
BsaHI GRCGYC 1 cut(s) 1471
BsaJI CCNNGG 3 cut(s) 155, 243, 1608
BsaWI WCCGGW 2 cut(s) 108, 1525
BsaXI ACNNNNNCTCC 2 cut(s) 40, 70
Bsc4I CCNNNNNNNGG 2 cut(s) 400, 1690
Bse8I GATNNNNATC 1 cut(s) 43
BseAI TCCGGA 1 cut(s) 1525
BseBI CCWGG 1 cut(s) 156
BseCI ATCGAT 2 cut(s) 41, 471
BseDI CCNNGG 3 cut(s) 155, 243, 1608
BseGI GGATG 6 cut(s) 190, 784, 1303, 1523, 1534, 1566
BseJI GATNNNNATC 1 cut(s) 43
BseLI CCNNNNNNNGG 2 cut(s) 400, 1690
BseMII CTCAG 4 cut(s) 80, 251, 480, 1786
BseRI GAGGAG 1 cut(s) 48
BseSI GKGCMC 2 cut(s) 463, 706
BseXI GCAGC 5 cut(s) 1181, 1312, 1347, 1363, 1786
BseYI CCCAGC 1 cut(s) 938
BsgI GTGCAG 1 cut(s) 553
Bsh1236I CGCG 1 cut(s) 287
Bsh1285I CGRYCG 1 cut(s) 41
BshFI GGCC 6 cut(s) 5, 226, 242, 311, 561, 1683
BshVI ATCGAT 2 cut(s) 41, 471
BsiEI CGRYCG 1 cut(s) 41
BsiHKAI GWGCWC 5 cut(s) 463, 648, 706, 1011, 1217
BsiSI CCGG 3 cut(s) 109, 683, 1526
BslI CCNNNNNNNGG 2 cut(s) 400, 1690
BsmAI GTCTC 2 cut(s) 64, 1775
BsmI GAATGC 1 cut(s) 1720
BsnI GGCC 6 cut(s) 5, 226, 242, 311, 561, 1683
Bsp119I TTCGAA 1 cut(s) 454
Bsp1286I GDGCHC 5 cut(s) 463, 648, 706, 1011, 1217
Bsp13I TCCGGA 1 cut(s) 1525
Bsp1407I TGTACA 1 cut(s) 966
Bsp143I GATC 9 cut(s) 38, 268, 390, 472, 600, 1341, 1489, 1843, 1916
Bsp19I CCATGG 1 cut(s) 1608
BspACI CCGC 3 cut(s) 287, 890, 1366
BspANI GGCC 6 cut(s) 5, 226, 242, 311, 561, 1683
BspCNI CTCAG 4 cut(s) 79, 252, 481, 1785
BspDI ATCGAT 2 cut(s) 41, 471
BspEI TCCGGA 1 cut(s) 1525
BspFNI CGCG 1 cut(s) 287
BspHI TCATGA 2 cut(s) 628, 1011
BspLI GGNNCC 3 cut(s) 165, 225, 1310
BspMI ACCTGC 1 cut(s) 1667
BspPI GGATC 5 cut(s) 276, 385, 467, 1497, 1924
BspT104I TTCGAA 1 cut(s) 454
BspTI CTTAAG 1 cut(s) 1909
BsrGI TGTACA 1 cut(s) 966
BssECI CCNNGG 3 cut(s) 155, 243, 1608
BssMI GATC 9 cut(s) 38, 268, 390, 472, 600, 1341, 1489, 1843, 1916
BssNI GRCGYC 1 cut(s) 1471
BssSI CACGAG 1 cut(s) 1499
BssT1I CCWWGG 2 cut(s) 243, 1608
Bst2BI CACGAG 1 cut(s) 1499
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 7 cut(s) 677, 691, 701, 779, 898, 1349, 1412
Bst6I CTCTTC 3 cut(s) 341, 1284, 1788
BstACI GRCGYC 1 cut(s) 1471
BstAFI CTTAAG 1 cut(s) 1909
BstAUI TGTACA 1 cut(s) 966
BstBAI YACGTR 1 cut(s) 464
BstBI TTCGAA 1 cut(s) 454
BstC8I GCNNGC 2 cut(s) 1783, 1787
BstDEI CTNAG 5 cut(s) 66, 260, 489, 516, 1772
BstDSI CCRYGG 1 cut(s) 1608
BstF5I GGATG 6 cut(s) 190, 784, 1303, 1523, 1534, 1566
BstFNI CGCG 1 cut(s) 287
BstKTI GATC 9 cut(s) 41, 271, 393, 475, 603, 1344, 1492, 1846, 1919
BstMAI GTCTC 2 cut(s) 64, 1775
BstMBI GATC 9 cut(s) 38, 268, 390, 472, 600, 1341, 1489, 1843, 1916
BstMCI CGRYCG 1 cut(s) 41
BstMWI GCNNNNNNNGC 3 cut(s) 239, 567, 1166
BstNI CCWGG 1 cut(s) 156
BstNSI RCATGY 2 cut(s) 979, 1421
BstSCI CCNGG 2 cut(s) 154, 681
BstSLI GKGCMC 2 cut(s) 463, 706
BstUI CGCG 1 cut(s) 287
BstV1I GCAGC 5 cut(s) 1181, 1312, 1347, 1363, 1786
BstV2I GAAGAC 1 cut(s) 535
BstX2I RGATCY 2 cut(s) 1489, 1916
BstXI CCANNNNNNTGG 1 cut(s) 382
BstYI RGATCY 2 cut(s) 1489, 1916
Bsu15I ATCGAT 2 cut(s) 41, 471
BsuRI GGCC 6 cut(s) 5, 226, 242, 311, 561, 1683
BsuTUI ATCGAT 2 cut(s) 41, 471
BtgI CCRYGG 1 cut(s) 1608
BtsCI GGATG 6 cut(s) 190, 784, 1303, 1523, 1534, 1566
BtsIMutI CAGTG 2 cut(s) 706, 909
BveI ACCTGC 1 cut(s) 1667
Cac8I GCNNGC 2 cut(s) 1783, 1787
CciI TCATGA 2 cut(s) 628, 1011
Cfr13I GGNCC 4 cut(s) 163, 224, 637, 1682
ClaI ATCGAT 2 cut(s) 41, 471
CseI GACGC 1 cut(s) 1460
Csp6I GTAC 1 cut(s) 967
CviQI GTAC 1 cut(s) 967
DdeI CTNAG 5 cut(s) 66, 260, 489, 516, 1772
DpnI GATC 9 cut(s) 40, 270, 392, 474, 602, 1343, 1491, 1845, 1918
DpnII GATC 9 cut(s) 38, 268, 390, 472, 600, 1341, 1489, 1843, 1916
DraI TTTAAA 1 cut(s) 1659
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 341, 1284, 1788
EarI CTCTTC 3 cut(s) 341, 1284, 1788
EciI GGCGGA 1 cut(s) 879
Ecl136II GAGCTC 2 cut(s) 646, 1215
Eco130I CCWWGG 2 cut(s) 243, 1608
Eco147I AGGCCT 1 cut(s) 242
Eco24I GRGCYC 2 cut(s) 648, 1217
Eco32I GATATC 1 cut(s) 45
Eco47I GGWCC 2 cut(s) 163, 637
Eco53kI GAGCTC 2 cut(s) 646, 1215
Eco57I CTGAAG 2 cut(s) 275, 1001
Eco72I CACGTG 1 cut(s) 464
EcoICRI GAGCTC 2 cut(s) 646, 1215
EcoO109I RGGNCCY 2 cut(s) 163, 224
EcoRII CCWGG 1 cut(s) 154
EcoRV GATATC 1 cut(s) 45
EcoT14I CCWWGG 2 cut(s) 243, 1608
EcoT22I ATGCAT 1 cut(s) 124
EcoT38I GRGCYC 2 cut(s) 648, 1217
ErhI CCWWGG 2 cut(s) 243, 1608
FauNDI CATATG 1 cut(s) 1899
FbaI TGATCA 1 cut(s) 1341
Fnu4HI GCNGC 5 cut(s) 1170, 1326, 1336, 1377, 1800
FokI GGATG 6 cut(s) 197, 771, 1310, 1530, 1541, 1573
FriOI GRGCYC 2 cut(s) 648, 1217
Fsp4HI GCNGC 5 cut(s) 1170, 1326, 1336, 1377, 1800
FspBI CTAG 4 cut(s) 860, 929, 1428, 1671
GluI GCNGC 5 cut(s) 1170, 1326, 1336, 1377, 1800
GsaI CCCAGC 1 cut(s) 942
GsuI CTGGAG 1 cut(s) 1140
HaeIII GGCC 6 cut(s) 5, 226, 242, 311, 561, 1683
HapII CCGG 3 cut(s) 109, 683, 1526
HgaI GACGC 1 cut(s) 1460
Hin1I GRCGYC 1 cut(s) 1471
HindIII AAGCTT 3 cut(s) 849, 1134, 1272
HinfI GANTC 5 cut(s) 501, 740, 1145, 1231, 1729
HpaII CCGG 3 cut(s) 109, 683, 1526
HphI GGTGA 3 cut(s) 434, 1123, 1843
Hpy166II GTNNAC 6 cut(s) 195, 461, 526, 704, 782, 1415
Hpy188I TCNGA 6 cut(s) 69, 127, 490, 1212, 1236, 1460
Hpy8I GTNNAC 6 cut(s) 195, 461, 526, 704, 782, 1415
HpyAV CCTTC 8 cut(s) 154, 177, 345, 504, 614, 763, 976, 1037
HpyCH4III ACNGT 7 cut(s) 677, 691, 701, 779, 898, 1349, 1412
HpyCH4IV ACGT 1 cut(s) 463
HpyF10VI GCNNNNNNNGC 3 cut(s) 239, 567, 1166
HpyF3I CTNAG 5 cut(s) 66, 260, 489, 516, 1772
HpySE526I ACGT 1 cut(s) 463
Hsp92I GRCGYC 1 cut(s) 1471
Kpn2I TCCGGA 1 cut(s) 1525
Ksp22I TGATCA 1 cut(s) 1341
Kzo9I GATC 9 cut(s) 38, 268, 390, 472, 600, 1341, 1489, 1843, 1916
LmnI GCTCC 1 cut(s) 1159
Lsp1109I GCAGC 5 cut(s) 1181, 1312, 1347, 1363, 1786
LweI GCATC 6 cut(s) 131, 220, 603, 943, 1508, 1729
MaeI CTAG 4 cut(s) 860, 929, 1428, 1671
MaeII ACGT 1 cut(s) 463
MaeIII GTNAC 4 cut(s) 587, 671, 691, 1111
MalI GATC 9 cut(s) 40, 270, 392, 474, 602, 1343, 1491, 1845, 1918
MboI GATC 9 cut(s) 38, 268, 390, 472, 600, 1341, 1489, 1843, 1916
MboII GAAGA 8 cut(s) 358, 535, 962, 1198, 1301, 1519, 1625, 1805
MflI RGATCY 2 cut(s) 1489, 1916
MhlI GDGCHC 5 cut(s) 463, 648, 706, 1011, 1217
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 385, 812
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 124
MroI TCCGGA 1 cut(s) 1525
MroXI GAANNNNTTC 1 cut(s) 212
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 2 cut(s) 380, 1422
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 479, 1325
MspCI CTTAAG 1 cut(s) 1909
MspI CCGG 3 cut(s) 109, 683, 1526
MspR9I CCNGG 2 cut(s) 156, 683
Mva1269I GAATGC 1 cut(s) 1720
MvaI CCWGG 1 cut(s) 156
MvnI CGCG 1 cut(s) 287
MwoI GCNNNNNNNGC 3 cut(s) 239, 567, 1166
NciI CCSGG 1 cut(s) 683
NcoI CCATGG 1 cut(s) 1608
NdeI CATATG 1 cut(s) 1899
NdeII GATC 9 cut(s) 38, 268, 390, 472, 600, 1341, 1489, 1843, 1916
NlaIV GGNNCC 3 cut(s) 165, 225, 1310
NmuCI GTSAC 2 cut(s) 691, 1111
NsiI ATGCAT 1 cut(s) 124
NspI RCATGY 2 cut(s) 979, 1421
NspV TTCGAA 1 cut(s) 454
PagI TCATGA 2 cut(s) 628, 1011
PaqCI CACCTGC 1 cut(s) 1667
PceI AGGCCT 1 cut(s) 242
PcsI WCGNNNNNNNCGW 1 cut(s) 460
PctI GAATGC 1 cut(s) 1720
PdmI GAANNNNTTC 1 cut(s) 212
PfeI GAWTC 5 cut(s) 501, 740, 1145, 1231, 1729
PflFI GACNNNGTC 1 cut(s) 689
PfoI TCCNGGA 1 cut(s) 681
PkrI GCNGC 5 cut(s) 1171, 1327, 1337, 1378, 1801
Ple19I CGATCG 1 cut(s) 41
PmaCI CACGTG 1 cut(s) 464
PmlI CACGTG 1 cut(s) 464
Ppu21I YACGTR 1 cut(s) 464
PpuMI RGGWCCY 1 cut(s) 163
PshBI ATTAAT 1 cut(s) 1065
PsiI TTATAA 4 cut(s) 497, 1119, 1542, 1752
Psp124BI GAGCTC 2 cut(s) 648, 1217
Psp5II RGGWCCY 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 154
PspCI CACGTG 1 cut(s) 464
PspFI CCCAGC 1 cut(s) 938
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 3 cut(s) 165, 225, 1310
PspPI GGNCC 4 cut(s) 163, 224, 637, 1682
PspPPI RGGWCCY 1 cut(s) 163
PsuI RGATCY 2 cut(s) 1489, 1916
PsyI GACNNNGTC 1 cut(s) 689
PvuI CGATCG 1 cut(s) 41
PvuII CAGCTG 2 cut(s) 479, 1325
RsaI GTAC 1 cut(s) 968
RsaNI GTAC 1 cut(s) 967
RseI CAYNNNNRTG 2 cut(s) 380, 1422
SacI GAGCTC 2 cut(s) 648, 1217
SatI GCNGC 5 cut(s) 1170, 1326, 1336, 1377, 1800
Sau3AI GATC 9 cut(s) 38, 268, 390, 472, 600, 1341, 1489, 1843, 1916
Sau96I GGNCC 4 cut(s) 163, 224, 637, 1682
ScrFI CCNGG 2 cut(s) 156, 683
SduI GDGCHC 5 cut(s) 463, 648, 706, 1011, 1217
SfaNI GCATC 6 cut(s) 131, 220, 603, 943, 1508, 1729
SfuI TTCGAA 1 cut(s) 454
SinI GGWCC 2 cut(s) 163, 637
SmiMI CAYNNNNRTG 2 cut(s) 380, 1422
SmlI CTYRAG 3 cut(s) 293, 1868, 1909
SmoI CTYRAG 3 cut(s) 293, 1868, 1909
SseBI AGGCCT 1 cut(s) 242
SsiI CCGC 3 cut(s) 287, 890, 1366
SspMI CTAG 4 cut(s) 860, 929, 1428, 1671
SstI GAGCTC 2 cut(s) 648, 1217
StuI AGGCCT 1 cut(s) 242
StyD4I CCNGG 2 cut(s) 154, 681
StyI CCWWGG 2 cut(s) 243, 1608
TaaI ACNGT 7 cut(s) 677, 691, 701, 779, 898, 1349, 1412
TaiI ACGT 1 cut(s) 466
TaqI TCGA 7 cut(s) 37, 41, 306, 454, 471, 1229, 1777
TatI WGTACW 1 cut(s) 966
TfiI GAWTC 5 cut(s) 501, 740, 1145, 1231, 1729
TscAI CASTG 2 cut(s) 706, 916
TseFI GTSAC 2 cut(s) 691, 1111
TseI GCWGC 5 cut(s) 1169, 1325, 1335, 1376, 1799
Tsp45I GTSAC 2 cut(s) 691, 1111
TspGWI ACGGA 1 cut(s) 383
TspRI CASTG 2 cut(s) 706, 916
Tth111I GACNNNGTC 1 cut(s) 689
Vha464I CTTAAG 1 cut(s) 1909
VneI GTGCAC 2 cut(s) 459, 702
VpaK11BI GGWCC 2 cut(s) 163, 637
VspI ATTAAT 1 cut(s) 1065
XapI RAATTY 2 cut(s) 210, 355
XceI RCATGY 2 cut(s) 979, 1421
XcmI CCANNNNNNNNNTGG 1 cut(s) 445
XmnI GAANNNNTTC 1 cut(s) 212
XspI CTAG 4 cut(s) 860, 929, 1428, 1671
Zsp2I ATGCAT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.