Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010176

Physical Location & Seq

Genomic Coordinates Reverse (-)

43325707 .. 43328474

Gene Structure 2768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0346700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTCTCTTGGAAAAGCAGCGAAGATCGACAATGTGGAGCGAATATTGACCAGTCACAAAGATCGTCGGTTTAAATTGGAAAAAGCAGCTAAAGACCGGGTTCTCTCTAAGAATTTTCCCGATGTGTCTTTGTCGGACGAGGAAAAAAACAGTTTGGTGGAAAAGTTAGGAAACTCTTTTTGGGCATTCGTAGAAGATGATTCGTTGGAAGATGAAGTAGATGATTTGTTGGTATGTGAAGAAAAGGCTTTGTTGGAACATGAAGAAAAGGCTTTGTTGGACGAGCTAGCCAAGGCAAATTTGGAAGAGGAAGAAAAGGCTTCTGGTACCAATTCAGTAGGAGACAAGAAACCTTCTTTCACAGGTATAGACTATGAAAGTGTAAATCCAGACGACACTGACTCTGATCGAGAATTTCTTAAAGATCTTGATTGCGCACCTATCGAACTAGGAGATGAAATGGATTGGGGAGTTTGTGAAGTTTGTTTGAAGGACAATGAGCACCATTTTTCACATTGCCCGTACCTTTTCTTTGGTGTCCCGGACGGCGCAACTCTTGGACCTGGGTATGCATTAGCCTGCAAGGAATGTTATGAGGTGGATGGCCACCCTGACAGACCCTGGGAAGCGCTCGCTGTTAGAAAGGTGTGCGACTTTTGCATCTGGCATGCACATTGGACTGAAGACTGCCCATATCAGGTACCAGAGGGCGATCGTGCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

241

Amino Acids

27.27

Weight (kDa)

4.46

Isoelectric Point (pI)

28.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16010
fragaria_vesca	FvH4_6g31160
malus_domestica	MD17G1195500.v1.1
prunus_persica	Prupe.3G071400_v2.0.a1
pyrus_communis	pycom17g20110
rosa_chinensis	RchiOBHm_Chr2g0137841
rosa_laevigata	RLG00000019680
rosa_multiflora	Rmu_co8002616.1_g000001 Rmu_sc0002170.1_g000007 Rmu_sc0007548.1_g000006
rosa_roxburghii	Rroxscaffold_2G00106770
rosa_rugosa	Rorug02G0346600 Rorug02G0346700 Rorug02G0346800 Rorug02G0346900 Rorug02G0347000
rosa_samantha	Rh2AG393400 Rh2BG400900 Rh2CG380100 Rh2DG415900
rosa_wichuraiana	Rw2G032220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	436
Acc65I	GGTACC	2 cut(s)	326, 700
AccB1I	GGYRCC	2 cut(s)	326, 700
AcoI	YGGCCR	1 cut(s)	604
AcsI	RAATTY	3 cut(s)	112, 298, 413
AcuI	CTGAAG	1 cut(s)	702
AfaI	GTAC	3 cut(s)	328, 524, 702
AfeI	AGCGCT	1 cut(s)	630
AfiI	CCNNNNNNNGG	1 cut(s)	697
AgsI	TTSAA	1 cut(s)	490
AjnI	CCWGG	2 cut(s)	562, 620
AjuI	GAANNNNNNNTTGG	2 cut(s)	163, 195
AluBI	AGCT	2 cut(s)	89, 286
AluI	AGCT	2 cut(s)	89, 286
Alw21I	GWGCWC	1 cut(s)	504
Alw26I	GTCTC	2 cut(s)	9, 336
AlwNI	CAGNNNCTG	1 cut(s)	621
Aor51HI	AGCGCT	1 cut(s)	630
AoxI	GGCC	1 cut(s)	604
ApeKI	GCWGC	2 cut(s)	17, 86
ApoI	RAATTY	3 cut(s)	112, 298, 413
Asp718I	GGTACC	2 cut(s)	326, 700
AspLEI	GCGC	3 cut(s)	437, 551, 631
AspS9I	GGNCC	1 cut(s)	560
AsuC2I	CCSGG	2 cut(s)	98, 542
AsuNHI	GCTAGC	1 cut(s)	286
AvaII	GGWCC	1 cut(s)	560
BalI	TGGCCA	1 cut(s)	606
BanI	GGYRCC	2 cut(s)	326, 700
BbsI	GAAGAC	1 cut(s)	690
Bbv12I	GWGCWC	1 cut(s)	504
BbvI	GCAGC	2 cut(s)	29, 98
BccI	CCATC	1 cut(s)	596
BceAI	ACGGC	1 cut(s)	562
BciT130I	CCWGG	2 cut(s)	564, 622
BcnI	CCSGG	2 cut(s)	98, 542
BcoDI	GTCTC	2 cut(s)	9, 336
BfaI	CTAG	2 cut(s)	287, 449
BfoI	RGCGCY	1 cut(s)	632
BglII	AGATCT	1 cut(s)	424
BisI	GCNGC	2 cut(s)	18, 87
BlsI	GCNGC	2 cut(s)	19, 88
Bme1390I	CCNGG	4 cut(s)	98, 542, 564, 622
Bme18I	GGWCC	1 cut(s)	560
BmgT120I	GGNCC	1 cut(s)	560
BmiI	GGNNCC	2 cut(s)	328, 702
BmrFI	CCNGG	4 cut(s)	98, 542, 564, 622
BmsI	GCATC	1 cut(s)	669
BmtI	GCTAGC	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	690
BpuMI	CCSGG	2 cut(s)	98, 542
BsaJI	CCNNGG	4 cut(s)	291, 563, 620, 621
Bsc4I	CCNNNNNNNGG	1 cut(s)	697
Bse1I	ACTGG	1 cut(s)	51
Bse3DI	GCAATG	1 cut(s)	514
BseBI	CCWGG	2 cut(s)	564, 622
BseDI	CCNNGG	4 cut(s)	291, 563, 620, 621
BseGI	GGATG	1 cut(s)	607
BseLI	CCNNNNNNNGG	1 cut(s)	697
BseMI	GCAATG	1 cut(s)	514
BseNI	ACTGG	1 cut(s)	51
BseXI	GCAGC	2 cut(s)	29, 98
Bsh1285I	CGRYCG	1 cut(s)	715
BshFI	GGCC	1 cut(s)	606
BshNI	GGYRCC	2 cut(s)	326, 700
BsiEI	CGRYCG	1 cut(s)	715
BsiHKAI	GWGCWC	1 cut(s)	504
BsiSI	CCGG	2 cut(s)	97, 542
BslFI	GGGAC	1 cut(s)	524
BslI	CCNNNNNNNGG	1 cut(s)	697
BsmAI	GTCTC	2 cut(s)	9, 336
BsmFI	GGGAC	1 cut(s)	524
BsmI	GAATGC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	606
Bsp1286I	GDGCHC	1 cut(s)	504
Bsp143I	GATC	5 cut(s)	24, 61, 406, 424, 712
BspANI	GGCC	1 cut(s)	606
BspLI	GGNNCC	2 cut(s)	328, 702
BspOI	GCTAGC	1 cut(s)	290
BspT107I	GGYRCC	2 cut(s)	326, 700
BsrDI	GCAATG	1 cut(s)	514
BsrI	ACTGG	1 cut(s)	51
BssECI	CCNNGG	4 cut(s)	291, 563, 620, 621
BssMI	GATC	5 cut(s)	24, 61, 406, 424, 712
BssT1I	CCWWGG	1 cut(s)	291
Bst2UI	CCWGG	2 cut(s)	564, 622
Bst4CI	ACNGT	1 cut(s)	152
Bst6I	CTCTTC	1 cut(s)	300
BstC8I	GCNNGC	4 cut(s)	288, 580, 633, 669
BstDEI	CTNAG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	607
BstH2I	RGCGCY	1 cut(s)	632
BstHHI	GCGC	3 cut(s)	437, 551, 631
BstKTI	GATC	5 cut(s)	27, 64, 409, 427, 715
BstMAI	GTCTC	2 cut(s)	9, 336
BstMBI	GATC	5 cut(s)	24, 61, 406, 424, 712
BstMCI	CGRYCG	1 cut(s)	715
BstMWI	GCNNNNNNNGC	1 cut(s)	657
BstNI	CCWGG	2 cut(s)	564, 622
BstNSI	RCATGY	1 cut(s)	671
BstSCI	CCNGG	4 cut(s)	96, 540, 562, 620
BstV1I	GCAGC	2 cut(s)	29, 98
BstV2I	GAAGAC	1 cut(s)	690
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
BsuRI	GGCC	1 cut(s)	606
BtsCI	GGATG	1 cut(s)	607
BtsIMutI	CAGTG	1 cut(s)	396
Cac8I	GCNNGC	4 cut(s)	288, 580, 633, 669
CaiI	CAGNNNCTG	1 cut(s)	621
CfoI	GCGC	3 cut(s)	437, 551, 631
Cfr13I	GGNCC	1 cut(s)	560
Csp6I	GTAC	3 cut(s)	327, 523, 701
CviAII	CATG	2 cut(s)	260, 668
CviJI	RGCY	8 cut(s)	89, 248, 272, 286, 290, 320, 578, 606
CviKI_1	RGCY	8 cut(s)	89, 248, 272, 286, 290, 320, 578, 606
CviQI	GTAC	3 cut(s)	327, 523, 701
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	5 cut(s)	26, 63, 408, 426, 714
DpnII	GATC	5 cut(s)	24, 61, 406, 424, 712
DraI	TTTAAA	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	604
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Eco130I	CCWWGG	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	560
Eco47III	AGCGCT	1 cut(s)	630
Eco57I	CTGAAG	1 cut(s)	702
EcoRII	CCWGG	2 cut(s)	562, 620
EcoT14I	CCWWGG	1 cut(s)	291
EcoT22I	ATGCAT	1 cut(s)	574
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	2 cut(s)	263, 671
FaiI	YATR	8 cut(s)	235, 261, 368, 375, 570, 594, 669, 694
FaqI	GGGAC	1 cut(s)	524
FatI	CATG	2 cut(s)	259, 667
Fnu4HI	GCNGC	2 cut(s)	18, 87
FokI	GGATG	1 cut(s)	614
Fsp4HI	GCNGC	2 cut(s)	18, 87
FspBI	CTAG	2 cut(s)	287, 449
FspI	TGCGCA	1 cut(s)	436
GlaI	GCGC	3 cut(s)	436, 550, 630
GluI	GCNGC	2 cut(s)	18, 87
HaeII	RGCGCY	1 cut(s)	632
HaeIII	GGCC	1 cut(s)	606
HapII	CCGG	2 cut(s)	97, 542
HhaI	GCGC	3 cut(s)	437, 551, 631
Hin1II	CATG	2 cut(s)	263, 671
Hin6I	GCGC	3 cut(s)	435, 549, 629
HinP1I	GCGC	3 cut(s)	435, 549, 629
HinfI	GANTC	2 cut(s)	200, 401
HpaII	CCGG	2 cut(s)	97, 542
Hpy188I	TCNGA	2 cut(s)	136, 406
Hpy188III	TCNNGA	4 cut(s)	119, 389, 410, 428
Hpy99I	CGWCG	1 cut(s)	69
HpyAV	CCTTC	2 cut(s)	363, 484
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4V	TGCA	4 cut(s)	572, 582, 660, 671
HpyF10VI	GCNNNNNNNGC	1 cut(s)	657
HpyF3I	CTNAG	1 cut(s)	108
Hsp92II	CATG	2 cut(s)	263, 671
HspAI	GCGC	3 cut(s)	435, 549, 629
KpnI	GGTACC	2 cut(s)	330, 704
Kzo9I	GATC	5 cut(s)	24, 61, 406, 424, 712
LmnI	GCTCC	1 cut(s)	37
Lsp1109I	GCAGC	2 cut(s)	29, 98
LweI	GCATC	1 cut(s)	669
MaeI	CTAG	2 cut(s)	287, 449
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	5 cut(s)	26, 63, 408, 426, 714
MboI	GATC	5 cut(s)	24, 61, 406, 424, 712
MboII	GAAGA	8 cut(s)	34, 206, 221, 251, 275, 317, 323, 695
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	1 cut(s)	504
MlsI	TGGCCA	1 cut(s)	606
MluCI	AATT	5 cut(s)	74, 112, 298, 331, 413
MluNI	TGGCCA	1 cut(s)	606
MlyI	GAGTC	1 cut(s)	395
MmeI	TCCRAC	4 cut(s)	114, 186, 234, 258
MnlI	CCTC	4 cut(s)	133, 301, 589, 700
Mox20I	TGGCCA	1 cut(s)	606
Mph1103I	ATGCAT	1 cut(s)	574
MscI	TGGCCA	1 cut(s)	606
MseI	TTAA	2 cut(s)	72, 420
Msp20I	TGGCCA	1 cut(s)	606
MspI	CCGG	2 cut(s)	97, 542
MspR9I	CCNGG	4 cut(s)	98, 542, 564, 622
Mva1269I	GAATGC	1 cut(s)	185
MvaI	CCWGG	2 cut(s)	564, 622
MwoI	GCNNNNNNNGC	1 cut(s)	657
NciI	CCSGG	2 cut(s)	98, 542
NdeII	GATC	5 cut(s)	24, 61, 406, 424, 712
NheI	GCTAGC	1 cut(s)	286
NlaIII	CATG	2 cut(s)	263, 671
NlaIV	GGNNCC	2 cut(s)	328, 702
NmuCI	GTSAC	1 cut(s)	53
NsbI	TGCGCA	1 cut(s)	436
NsiI	ATGCAT	1 cut(s)	574
NspI	RCATGY	1 cut(s)	671
PaeI	GCATGC	1 cut(s)	671
PasI	CCCWGGG	1 cut(s)	621
PctI	GAATGC	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	200
PfoI	TCCNGGA	1 cut(s)	540
PkrI	GCNGC	2 cut(s)	19, 88
Ple19I	CGATCG	1 cut(s)	715
PleI	GAGTC	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	395
Psp6I	CCWGG	2 cut(s)	562, 620
PspGI	CCWGG	2 cut(s)	562, 620
PspN4I	GGNNCC	2 cut(s)	328, 702
PspPI	GGNCC	1 cut(s)	560
PstNI	CAGNNNCTG	1 cut(s)	621
PsuI	RGATCY	1 cut(s)	424
PvuI	CGATCG	1 cut(s)	715
RsaI	GTAC	3 cut(s)	328, 524, 702
RsaNI	GTAC	3 cut(s)	327, 523, 701
SaqAI	TTAA	2 cut(s)	72, 420
SatI	GCNGC	2 cut(s)	18, 87
Sau3AI	GATC	5 cut(s)	24, 61, 406, 424, 712
Sau96I	GGNCC	1 cut(s)	560
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	4 cut(s)	98, 542, 564, 622
SduI	GDGCHC	1 cut(s)	504
SfaNI	GCATC	1 cut(s)	669
SinI	GGWCC	1 cut(s)	560
SphI	GCATGC	1 cut(s)	671
Sse9I	AATT	5 cut(s)	74, 112, 298, 331, 413
SspI	AATATT	1 cut(s)	45
SspMI	CTAG	2 cut(s)	287, 449
StyD4I	CCNGG	4 cut(s)	96, 540, 562, 620
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	1 cut(s)	152
TaqI	TCGA	3 cut(s)	27, 409, 444
TasI	AATT	5 cut(s)	74, 112, 298, 331, 413
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	2 cut(s)	72, 420
Tru9I	TTAA	2 cut(s)	72, 420
TscAI	CASTG	1 cut(s)	403
TseFI	GTSAC	1 cut(s)	53
TseI	GCWGC	2 cut(s)	17, 86
Tsp45I	GTSAC	1 cut(s)	53
TspDTI	ATGAA	4 cut(s)	228, 276, 390, 471
TspRI	CASTG	1 cut(s)	403
VpaK11BI	GGWCC	1 cut(s)	560
XapI	RAATTY	3 cut(s)	112, 298, 413
XceI	RCATGY	1 cut(s)	671
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XspI	CTAG	2 cut(s)	287, 449
Zsp2I	ATGCAT	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.