Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G15860 AT1G15860 AT1G15860 |
| fragaria_vesca | FvH4_6g28870 |
| malus_domestica | MD17G1220700.v1.1 |
| prunus_persica | Prupe.3G096100_v2.0.a1 Prupe.3G096100_v2.0.a1 Prupe.3G096100_v2.0.a1 Prupe.3G096100_v2.0.a1 Prupe.3G096100_v2.0.a1 |
| pyrus_communis | pycom09g14150 pycom17g22530 |
| rosa_chinensis | RchiOBHm_Chr2g0133421 |
| rosa_laevigata | RLG00000019330 |
| rosa_multiflora | Rmu_sc0003874.1_g000004 |
| rosa_roxburghii | Rroxscaffold_2G00111180 |
| rosa_rugosa | Rorug02G0311700 Rorug02G0311700 Rorug02G0311700 |
| rosa_samantha | Rh2AG364100 Rh2BG370000 Rh2CG347400 Rh2DG386900 |
| rosa_wichuraiana | Rw2G029660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 262 |
| AclWI | GGATC | 3 cut(s) | 262, 339, 412 |
| AfaI | GTAC | 2 cut(s) | 38, 293 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 271 |
| AgeI | ACCGGT | 1 cut(s) | 351 |
| AgsI | TTSAA | 1 cut(s) | 437 |
| AjnI | CCWGG | 2 cut(s) | 8, 45 |
| AluBI | AGCT | 3 cut(s) | 23, 121, 465 |
| AluI | AGCT | 3 cut(s) | 23, 121, 465 |
| AlwI | GGATC | 3 cut(s) | 262, 339, 412 |
| AoxI | GGCC | 2 cut(s) | 140, 410 |
| AsiGI | ACCGGT | 1 cut(s) | 351 |
| AspS9I | GGNCC | 1 cut(s) | 411 |
| AsuHPI | GGTGA | 1 cut(s) | 34 |
| BccI | CCATC | 2 cut(s) | 151, 334 |
| BciT130I | CCWGG | 2 cut(s) | 10, 47 |
| BciVI | GTATCC | 1 cut(s) | 435 |
| BfaI | CTAG | 2 cut(s) | 122, 251 |
| BfuAI | ACCTGC | 1 cut(s) | 262 |
| BfuI | GTATCC | 1 cut(s) | 435 |
| Bme1390I | CCNGG | 2 cut(s) | 10, 47 |
| BmgT120I | GGNCC | 1 cut(s) | 411 |
| BmrFI | CCNGG | 2 cut(s) | 10, 47 |
| Bpu10I | CCTNAGC | 1 cut(s) | 383 |
| BsaJI | CCNNGG | 1 cut(s) | 45 |
| BsaWI | WCCGGW | 1 cut(s) | 351 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 271 |
| Bse118I | RCCGGY | 1 cut(s) | 351 |
| BseBI | CCWGG | 2 cut(s) | 10, 47 |
| BseDI | CCNNGG | 1 cut(s) | 45 |
| BseGI | GGATG | 1 cut(s) | 345 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 271 |
| BseMII | CTCAG | 2 cut(s) | 68, 302 |
| BseRI | GAGGAG | 1 cut(s) | 209 |
| BshFI | GGCC | 2 cut(s) | 142, 412 |
| BshTI | ACCGGT | 1 cut(s) | 351 |
| BsiSI | CCGG | 1 cut(s) | 352 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 271 |
| BsmI | GAATGC | 1 cut(s) | 173 |
| BsnI | GGCC | 2 cut(s) | 142, 412 |
| Bsp143I | GATC | 3 cut(s) | 254, 331, 417 |
| BspANI | GGCC | 2 cut(s) | 142, 412 |
| BspCNI | CTCAG | 2 cut(s) | 69, 301 |
| BspMI | ACCTGC | 1 cut(s) | 262 |
| BspPI | GGATC | 3 cut(s) | 262, 339, 412 |
| BspQI | GCTCTTC | 1 cut(s) | 200 |
| BsrFI | RCCGGY | 1 cut(s) | 351 |
| BssAI | RCCGGY | 1 cut(s) | 351 |
| BssECI | CCNNGG | 1 cut(s) | 45 |
| BssMI | GATC | 3 cut(s) | 254, 331, 417 |
| Bst2UI | CCWGG | 2 cut(s) | 10, 47 |
| Bst6I | CTCTTC | 2 cut(s) | 45, 200 |
| BstC8I | GCNNGC | 1 cut(s) | 6 |
| BstDEI | CTNAG | 3 cut(s) | 77, 288, 383 |
| BstF5I | GGATG | 1 cut(s) | 345 |
| BstKTI | GATC | 3 cut(s) | 257, 334, 420 |
| BstMBI | GATC | 3 cut(s) | 254, 331, 417 |
| BstNI | CCWGG | 2 cut(s) | 10, 47 |
| BstSCI | CCNGG | 2 cut(s) | 8, 45 |
| BstX2I | RGATCY | 1 cut(s) | 254 |
| BstYI | RGATCY | 1 cut(s) | 254 |
| BsuI | GTATCC | 1 cut(s) | 435 |
| BsuRI | GGCC | 2 cut(s) | 142, 412 |
| BtgZI | GCGATG | 1 cut(s) | 375 |
| BtsCI | GGATG | 1 cut(s) | 345 |
| BtsIMutI | CAGTG | 1 cut(s) | 74 |
| BveI | ACCTGC | 1 cut(s) | 262 |
| Cac8I | GCNNGC | 1 cut(s) | 6 |
| Cfr10I | RCCGGY | 1 cut(s) | 351 |
| Cfr13I | GGNCC | 1 cut(s) | 411 |
| Csp6I | GTAC | 2 cut(s) | 37, 292 |
| CspAI | ACCGGT | 1 cut(s) | 351 |
| CviAII | CATG | 1 cut(s) | 408 |
| CviJI | RGCY | 7 cut(s) | 23, 121, 142, 345, 412, 459, 465 |
| CviKI_1 | RGCY | 7 cut(s) | 23, 121, 142, 345, 412, 459, 465 |
| CviQI | GTAC | 2 cut(s) | 37, 292 |
| DdeI | CTNAG | 3 cut(s) | 77, 288, 383 |
| DpnI | GATC | 3 cut(s) | 256, 333, 419 |
| DpnII | GATC | 3 cut(s) | 254, 331, 417 |
| Eam1104I | CTCTTC | 2 cut(s) | 45, 200 |
| EarI | CTCTTC | 2 cut(s) | 45, 200 |
| EcoRII | CCWGG | 2 cut(s) | 8, 45 |
| EcoT22I | ATGCAT | 1 cut(s) | 175 |
| FaeI | CATG | 1 cut(s) | 411 |
| FaiI | YATR | 8 cut(s) | 171, 212, 218, 227, 229, 323, 329, 409 |
| FatI | CATG | 1 cut(s) | 407 |
| FauNDI | CATATG | 1 cut(s) | 227 |
| FokI | GGATG | 1 cut(s) | 352 |
| FspBI | CTAG | 2 cut(s) | 122, 251 |
| HaeIII | GGCC | 2 cut(s) | 142, 412 |
| HapII | CCGG | 1 cut(s) | 352 |
| Hin1II | CATG | 1 cut(s) | 411 |
| HincII | GTYRAC | 1 cut(s) | 277 |
| HindII | GTYRAC | 1 cut(s) | 277 |
| HinfI | GANTC | 1 cut(s) | 301 |
| HpaII | CCGG | 1 cut(s) | 352 |
| HphI | GGTGA | 1 cut(s) | 34 |
| Hpy166II | GTNNAC | 2 cut(s) | 85, 277 |
| Hpy188I | TCNGA | 2 cut(s) | 179, 306 |
| Hpy188III | TCNNGA | 2 cut(s) | 136, 377 |
| Hpy8I | GTNNAC | 2 cut(s) | 85, 277 |
| HpyAV | CCTTC | 1 cut(s) | 100 |
| HpyCH4V | TGCA | 3 cut(s) | 173, 271, 407 |
| HpyF3I | CTNAG | 3 cut(s) | 77, 288, 383 |
| Hsp92II | CATG | 1 cut(s) | 411 |
| Kzo9I | GATC | 3 cut(s) | 254, 331, 417 |
| LguI | GCTCTTC | 1 cut(s) | 200 |
| LpnPI | CCDG | 9 cut(s) | 22, 32, 59, 121, 129, 257, 365, 390, 411 |
| MaeI | CTAG | 2 cut(s) | 122, 251 |
| MalI | GATC | 3 cut(s) | 256, 333, 419 |
| MboI | GATC | 3 cut(s) | 254, 331, 417 |
| MboII | GAAGA | 2 cut(s) | 62, 217 |
| MflI | RGATCY | 1 cut(s) | 254 |
| MluCI | AATT | 2 cut(s) | 98, 427 |
| MnlI | CCTC | 5 cut(s) | 72, 124, 132, 187, 431 |
| Mph1103I | ATGCAT | 1 cut(s) | 175 |
| MseI | TTAA | 3 cut(s) | 69, 101, 239 |
| MslI | CAYNNNNRTG | 1 cut(s) | 326 |
| MspI | CCGG | 1 cut(s) | 352 |
| MspR9I | CCNGG | 2 cut(s) | 10, 47 |
| Mva1269I | GAATGC | 1 cut(s) | 173 |
| MvaI | CCWGG | 2 cut(s) | 10, 47 |
| NdeI | CATATG | 1 cut(s) | 227 |
| NdeII | GATC | 3 cut(s) | 254, 331, 417 |
| NlaIII | CATG | 1 cut(s) | 411 |
| NsiI | ATGCAT | 1 cut(s) | 175 |
| PciSI | GCTCTTC | 1 cut(s) | 200 |
| PctI | GAATGC | 1 cut(s) | 173 |
| PfeI | GAWTC | 1 cut(s) | 301 |
| PinAI | ACCGGT | 1 cut(s) | 351 |
| Psp6I | CCWGG | 2 cut(s) | 8, 45 |
| PspGI | CCWGG | 2 cut(s) | 8, 45 |
| PspPI | GGNCC | 1 cut(s) | 411 |
| PsuI | RGATCY | 1 cut(s) | 254 |
| RsaI | GTAC | 2 cut(s) | 38, 293 |
| RsaNI | GTAC | 2 cut(s) | 37, 292 |
| RseI | CAYNNNNRTG | 1 cut(s) | 326 |
| SapI | GCTCTTC | 1 cut(s) | 200 |
| SaqAI | TTAA | 3 cut(s) | 69, 101, 239 |
| Sau3AI | GATC | 3 cut(s) | 254, 331, 417 |
| Sau96I | GGNCC | 1 cut(s) | 411 |
| ScrFI | CCNGG | 2 cut(s) | 10, 47 |
| SetI | ASST | 7 cut(s) | 25, 123, 135, 276, 297, 384, 467 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 326 |
| Sse9I | AATT | 2 cut(s) | 98, 427 |
| SspI | AATATT | 1 cut(s) | 244 |
| SspMI | CTAG | 2 cut(s) | 122, 251 |
| StyD4I | CCNGG | 2 cut(s) | 8, 45 |
| TaqI | TCGA | 2 cut(s) | 146, 423 |
| TasI | AATT | 2 cut(s) | 98, 427 |
| TfiI | GAWTC | 1 cut(s) | 301 |
| Tru1I | TTAA | 3 cut(s) | 69, 101, 239 |
| Tru9I | TTAA | 3 cut(s) | 69, 101, 239 |
| TscAI | CASTG | 1 cut(s) | 81 |
| TspDTI | ATGAA | 1 cut(s) | 32 |
| TspGWI | ACGGA | 1 cut(s) | 206 |
| TspRI | CASTG | 1 cut(s) | 81 |
| XspI | CTAG | 2 cut(s) | 122, 251 |
| Zsp2I | ATGCAT | 1 cut(s) | 175 |