pycom17g22730

Photosynthetic NDH subunit of subcomplex B 1, chloroplastic

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
21137780 .. 21140665
2886 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1371 bp
ATGGCCACTACAACTTCTCTGCTTCCCAAATCCTTCCCACCATTTCTCACCAACGCACCTTCATTCCCCTCAACCCTTTTCACCAAGCTCTCGTCTTTCAACCCACAGGACCACCCCCATTGCATAAAAAGGCCTAACCTTCAAACAAATGCCAAGAAGAAGAACCCCTGGCTCGACCCTTTTGATGATGGGGAGGACCCTGACATGGAGTACGGATCCCTGTTCGCGGACGGGAAGCAGGACGAGGATGATAGGCCACCCGAAAACCCGGATAATCCATACGGGTTCTTGAAGTTCCCAATGGGATACAGTGTGGAAGTGGCATCACTGGCATTGAAAGTGAGGGGGGATGTTAGGAGGTGCTGCTGTGTGGTTTCTGGTGGTGTGTATGAGAATTTGCTGTTTTTTCCGGTAATTCAGTTGCTTAAGGACCGGTATCCCGGCGTGCAAGTGGATGCGGTGGCTTCTGCTAGAGGGAAGCAAGCTTATGAGTTGAATAAGAATGTGAGATGGGCTGACGTGTATGATCCTGATGATCATTTTCCTGAGCCTGCTGAGTATACTGACATGGTTGGACTCCTTAAGAGTAGGTACTATGACATGATCTTATCAACCAAGCTAGCAGGTCTCGGCCATGGAATATTTTTGTTCATGACAACAGCCAGAGAGAAGGTGAGCTACATTTATCCAAATGTAAACGCTGCAGGAGCTGGATTGTTTCTATCTGAAACATTTAGACCGAATGGTATGAATCTCGCTGAAGGCGGGTATAACATGTATCACCAGATGGTGGATTGGTTGGGGAGACCTGTGCGGGATGTGCCACGACAAGCTTTGCCCCCGCTTAAAATATCAATTTCAAAGAAGCTAAAGCAGACTGTAGAGTCAAAATACAAGAAAGCAGGTGTAGATAAAGGAAAGTATATTGTGATTCACGGGTTGGAGTCGGATTCAAAAGCCTCGATGCAGTCTAAGGGGGATAGTGATAGCTTGCTACCCATCGAAACTTGGGCTGCAATAGTCCGCGTTTTTGTCATTCCACATGAGAAGGAAAGGGAAAATGTGGAGGAAATAGTTGGAGAAGATACCAGCATTGTGTTCATAACAACCCCTGGGCAGCTTGCCGCTCTTATCAATGACTCGGCTGGTGTGATAACTACAAATACCGCAGCTATTCAACTGGCAAATGCACGCCAAAAACCCTGCATTGCATTATTTGGCTCTGCAGAGAAGGGGAAACTATTCGTTCCCAACGAAGAGGAGAAGAACTGTGTTATTGTTTCATCCAAGACAAAAATGTTAAAGGACATTGACACTGAAGCTGTTAAAAATGCACTTCCAATTTTCAATGTGTCCCTGGCTCTAGTCTAA

Protein Analysis

457

Amino Acids

50.51

Weight (kDa)

6.06

Isoelectric Point (pI)

30.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013329)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 893
AasI GACNNNNNNGTC 1 cut(s) 883
Acc36I ACCTGC 2 cut(s) 614, 893
AccB7I CCANNNNNTGG 1 cut(s) 790
AccBSI CCGCTC 1 cut(s) 1127
AccI GTMKAC 1 cut(s) 560
AccII CGCG 2 cut(s) 227, 1026
AciI CCGC 8 cut(s) 227, 458, 765, 814, 842, 1024, 1125, 1167
AclWI GGATC 3 cut(s) 210, 223, 521
AcoI YGGCCR 2 cut(s) 3, 631
AcsI RAATTY 1 cut(s) 394
AcuI CTGAAG 2 cut(s) 780, 1338
AfaI GTAC 2 cut(s) 212, 593
AfiI CCNNNNNNNGG 3 cut(s) 205, 226, 790
AflII CTTAAG 2 cut(s) 425, 581
AflIII ACRYGT 2 cut(s) 519, 774
AgeI ACCGGT 1 cut(s) 432
AgsI TTSAA 9 cut(s) 100, 143, 292, 337, 496, 861, 954, 1178, 1348
AjiI CACGTC 1 cut(s) 520
AjnI CCWGG 3 cut(s) 167, 1111, 1356
Alw26I GTCTC 2 cut(s) 632, 799
AlwI GGATC 3 cut(s) 210, 223, 521
AlwNI CAGNNNCTG 1 cut(s) 710
AoxI GGCC 4 cut(s) 3, 131, 254, 631
ApeKI GCWGC 5 cut(s) 363, 701, 1013, 1117, 1169
ApoI RAATTY 1 cut(s) 394
AsiGI ACCGGT 1 cut(s) 432
Asp700I GAANNNNTTC 1 cut(s) 1241
AspS9I GGNCC 3 cut(s) 109, 196, 430
AsuC2I CCSGG 2 cut(s) 269, 441
AsuHPI GGTGA 4 cut(s) 40, 73, 685, 773
AsuNHI GCTAGC 1 cut(s) 619
AvaII GGWCC 3 cut(s) 109, 196, 430
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 215
BarI GAAGNNNNNNTAC 2 cut(s) 662, 694
BbvI GCAGC 5 cut(s) 350, 688, 1000, 1129, 1181
BccI CCATC 4 cut(s) 182, 504, 781, 1007
BciT130I CCWGG 3 cut(s) 169, 1113, 1358
BciVI GTATCC 2 cut(s) 299, 447
BclI TGATCA 1 cut(s) 535
BcnI CCSGG 2 cut(s) 269, 441
BcoDI GTCTC 2 cut(s) 632, 799
BfaI CTAG 3 cut(s) 471, 620, 1364
BfmI CTRYAG 3 cut(s) 702, 879, 1224
BfrI CTTAAG 2 cut(s) 425, 581
BfuAI ACCTGC 2 cut(s) 614, 893
BfuI GTATCC 2 cut(s) 299, 447
BisI GCNGC 6 cut(s) 364, 702, 1014, 1118, 1125, 1170
BlsI GCNGC 6 cut(s) 365, 703, 1015, 1119, 1126, 1171
Bme1390I CCNGG 5 cut(s) 169, 269, 441, 1113, 1358
Bme18I GGWCC 3 cut(s) 109, 196, 430
BmgBI CACGTC 1 cut(s) 520
BmgT120I GGNCC 3 cut(s) 109, 196, 430
BmiI GGNNCC 2 cut(s) 198, 217
BmrFI CCNGG 5 cut(s) 169, 269, 441, 1113, 1358
BmsI GCATC 3 cut(s) 332, 445, 954
BmtI GCTAGC 1 cut(s) 623
Bpu10I CCTNAGC 1 cut(s) 546
BpuMI CCSGG 2 cut(s) 269, 441
BsaI GGTCTC 2 cut(s) 632, 799
BsaJI CCNNGG 5 cut(s) 167, 634, 1111, 1112, 1356
BsaWI WCCGGW 2 cut(s) 409, 432
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 226, 790
Bse118I RCCGGY 1 cut(s) 432
Bse1I ACTGG 2 cut(s) 333, 1185
Bse3DI GCAATG 2 cut(s) 118, 1206
BseBI CCWGG 3 cut(s) 169, 1113, 1358
BseDI CCNNGG 5 cut(s) 167, 634, 1111, 1112, 1356
BseGI GGATG 5 cut(s) 253, 355, 460, 823, 1283
BseLI CCNNNNNNNGG 3 cut(s) 205, 226, 790
BseMI GCAATG 2 cut(s) 118, 1206
BseMII CTCAG 2 cut(s) 537, 546
BseNI ACTGG 2 cut(s) 333, 1185
BseRI GAGGAG 1 cut(s) 1274
BseXI GCAGC 5 cut(s) 350, 688, 1000, 1129, 1181
Bsh1236I CGCG 2 cut(s) 227, 1026
BshFI GGCC 4 cut(s) 5, 133, 256, 633
BshTI ACCGGT 1 cut(s) 432
BsiSI CCGG 4 cut(s) 269, 410, 433, 441
BslFI GGGAC 1 cut(s) 1339
BslI CCNNNNNNNGG 3 cut(s) 205, 226, 790
BsmAI GTCTC 2 cut(s) 632, 799
BsmFI GGGAC 1 cut(s) 1339
BsnI GGCC 4 cut(s) 5, 133, 256, 633
Bso31I GGTCTC 2 cut(s) 632, 799
Bsp143I GATC 4 cut(s) 215, 526, 535, 603
Bsp19I CCATGG 1 cut(s) 634
BspACI CCGC 8 cut(s) 227, 458, 765, 814, 842, 1024, 1125, 1167
BspANI GGCC 4 cut(s) 5, 133, 256, 633
BspCNI CTCAG 2 cut(s) 538, 547
BspFNI CGCG 2 cut(s) 227, 1026
BspHI TCATGA 1 cut(s) 651
BspLI GGNNCC 2 cut(s) 198, 217
BspMAI CTGCAG 2 cut(s) 706, 1228
BspMI ACCTGC 2 cut(s) 614, 893
BspOI GCTAGC 1 cut(s) 623
BspPI GGATC 3 cut(s) 210, 223, 521
BspTI CTTAAG 2 cut(s) 425, 581
BspTNI GGTCTC 2 cut(s) 632, 799
BsrBI CCGCTC 1 cut(s) 1127
BsrDI GCAATG 2 cut(s) 118, 1206
BsrFI RCCGGY 1 cut(s) 432
BsrI ACTGG 2 cut(s) 333, 1185
BssAI RCCGGY 1 cut(s) 432
BssECI CCNNGG 5 cut(s) 167, 634, 1111, 1112, 1356
BssMI GATC 4 cut(s) 215, 526, 535, 603
BssNAI GTATAC 1 cut(s) 561
BssT1I CCWWGG 1 cut(s) 634
Bst1107I GTATAC 1 cut(s) 561
Bst2UI CCWGG 3 cut(s) 169, 1113, 1358
Bst4CI ACNGT 3 cut(s) 311, 880, 1271
Bst6I CTCTTC 1 cut(s) 1251
BstAFI CTTAAG 2 cut(s) 425, 581
BstC8I GCNNGC 7 cut(s) 446, 483, 552, 621, 992, 1122, 1192
BstDEI CTNAG 3 cut(s) 546, 555, 972
BstDSI CCRYGG 1 cut(s) 634
BstF5I GGATG 5 cut(s) 253, 355, 460, 823, 1283
BstFNI CGCG 2 cut(s) 227, 1026
BstKTI GATC 4 cut(s) 218, 529, 538, 606
BstMAI GTCTC 2 cut(s) 632, 799
BstMBI GATC 4 cut(s) 215, 526, 535, 603
BstMWI GCNNNNNNNGC 3 cut(s) 329, 707, 820
BstNI CCWGG 3 cut(s) 169, 1113, 1358
BstNSI RCATGY 1 cut(s) 778
BstSCI CCNGG 5 cut(s) 167, 267, 439, 1111, 1356
BstSFI CTRYAG 3 cut(s) 702, 879, 1224
BstUI CGCG 2 cut(s) 227, 1026
BstV1I GCAGC 5 cut(s) 350, 688, 1000, 1129, 1181
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BstZ17I GTATAC 1 cut(s) 561
BsuI GTATCC 2 cut(s) 299, 447
BsuRI GGCC 4 cut(s) 5, 133, 256, 633
BtgI CCRYGG 1 cut(s) 634
BtrI CACGTC 1 cut(s) 520
BtsCI GGATG 5 cut(s) 253, 355, 460, 823, 1283
BtsIMutI CAGTG 3 cut(s) 316, 326, 1314
BveI ACCTGC 2 cut(s) 614, 893
Cac8I GCNNGC 7 cut(s) 446, 483, 552, 621, 992, 1122, 1192
CaiI CAGNNNCTG 1 cut(s) 710
CciI TCATGA 1 cut(s) 651
Cfr10I RCCGGY 1 cut(s) 432
Cfr13I GGNCC 3 cut(s) 109, 196, 430
Csp6I GTAC 2 cut(s) 211, 592
CspAI ACCGGT 1 cut(s) 432
CspCI CAANNNNNGTGG 2 cut(s) 101, 136
CviAII CATG 7 cut(s) 205, 568, 601, 635, 652, 775, 1043
CviQI GTAC 2 cut(s) 211, 592
DdeI CTNAG 3 cut(s) 546, 555, 972
DpnI GATC 4 cut(s) 217, 528, 537, 605
DpnII GATC 4 cut(s) 215, 526, 535, 603
DrdI GACNNNNNNGTC 1 cut(s) 883
DseDI GACNNNNNNGTC 1 cut(s) 883
EaeI YGGCCR 2 cut(s) 3, 631
Eam1104I CTCTTC 1 cut(s) 1251
EarI CTCTTC 1 cut(s) 1251
Eco130I CCWWGG 1 cut(s) 634
Eco147I AGGCCT 1 cut(s) 133
Eco31I GGTCTC 2 cut(s) 632, 799
Eco47I GGWCC 3 cut(s) 109, 196, 430
Eco57I CTGAAG 2 cut(s) 780, 1338
EcoO109I RGGNCCY 1 cut(s) 196
EcoRII CCWGG 3 cut(s) 167, 1111, 1356
EcoT14I CCWWGG 1 cut(s) 634
ErhI CCWWGG 1 cut(s) 634
FaeI CATG 7 cut(s) 208, 571, 604, 638, 655, 778, 1046
FaqI GGGAC 1 cut(s) 1339
FatI CATG 7 cut(s) 204, 567, 600, 634, 651, 774, 1042
FauI CCCGC 3 cut(s) 758, 807, 849
FbaI TGATCA 1 cut(s) 535
FblI GTMKAC 1 cut(s) 560
Fnu4HI GCNGC 6 cut(s) 364, 702, 1014, 1118, 1125, 1170
FokI GGATG 5 cut(s) 260, 362, 467, 830, 1270
Fsp4HI GCNGC 6 cut(s) 364, 702, 1014, 1118, 1125, 1170
FspBI CTAG 3 cut(s) 471, 620, 1364
GluI GCNGC 6 cut(s) 364, 702, 1014, 1118, 1125, 1170
HaeIII GGCC 4 cut(s) 5, 133, 256, 633
HapII CCGG 4 cut(s) 269, 410, 433, 441
Hin1II CATG 7 cut(s) 208, 571, 604, 638, 655, 778, 1046
HindIII AAGCTT 2 cut(s) 483, 831
HinfI GANTC 7 cut(s) 576, 751, 884, 931, 944, 950, 1139
HpaII CCGG 4 cut(s) 269, 410, 433, 441
HphI GGTGA 4 cut(s) 40, 73, 685, 773
Hpy166II GTNNAC 2 cut(s) 561, 697
Hpy188I TCNGA 2 cut(s) 727, 949
Hpy188III TCNNGA 4 cut(s) 289, 530, 545, 652
Hpy8I GTNNAC 2 cut(s) 561, 697
HpyAV CCTTC 7 cut(s) 43, 69, 149, 664, 755, 1042, 1225
HpyCH4III ACNGT 3 cut(s) 311, 880, 1271
HpyCH4IV ACGT 1 cut(s) 519
HpyF10VI GCNNNNNNNGC 3 cut(s) 329, 707, 820
HpyF3I CTNAG 3 cut(s) 546, 555, 972
HpySE526I ACGT 1 cut(s) 519
Hsp92II CATG 7 cut(s) 208, 571, 604, 638, 655, 778, 1046
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 4 cut(s) 215, 526, 535, 603
LmnI GCTCC 1 cut(s) 707
Lsp1109I GCAGC 5 cut(s) 350, 688, 1000, 1129, 1181
LweI GCATC 3 cut(s) 332, 445, 954
MaeI CTAG 3 cut(s) 471, 620, 1364
MaeII ACGT 1 cut(s) 519
MalI GATC 4 cut(s) 217, 528, 537, 605
MbiI CCGCTC 1 cut(s) 1127
MboI GATC 4 cut(s) 215, 526, 535, 603
MboII GAAGA 5 cut(s) 169, 172, 1094, 1268, 1276
MflI RGATCY 1 cut(s) 215
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 394, 414, 855, 1341
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 4 cut(s) 570, 893, 953, 1133
MmeI TCCRAC 4 cut(s) 553, 921, 927, 1057
MnlI CCTC 9 cut(s) 79, 187, 238, 336, 351, 467, 970, 1060, 1252
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 1241
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 426, 582, 846, 1301, 1326
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 2 cut(s) 425, 581
MspI CCGG 4 cut(s) 269, 410, 433, 441
MspR9I CCNGG 5 cut(s) 169, 269, 441, 1113, 1358
MvaI CCWGG 3 cut(s) 169, 1113, 1358
MvnI CGCG 2 cut(s) 227, 1026
MwoI GCNNNNNNNGC 3 cut(s) 329, 707, 820
NciI CCSGG 2 cut(s) 269, 441
NcoI CCATGG 1 cut(s) 634
NdeII GATC 4 cut(s) 215, 526, 535, 603
NheI GCTAGC 1 cut(s) 619
NlaIII CATG 7 cut(s) 208, 571, 604, 638, 655, 778, 1046
NlaIV GGNNCC 2 cut(s) 198, 217
NmeAIII GCCGAG 2 cut(s) 609, 1121
NspI RCATGY 1 cut(s) 778
PagI TCATGA 1 cut(s) 651
PaqCI CACCTGC 1 cut(s) 893
PasI CCCWGGG 1 cut(s) 1112
PceI AGGCCT 1 cut(s) 133
PciI ACATGT 1 cut(s) 774
PcsI WCGNNNNNNNCGW 1 cut(s) 1251
PdmI GAANNNNTTC 1 cut(s) 1241
PfeI GAWTC 3 cut(s) 751, 931, 950
PflMI CCANNNNNTGG 1 cut(s) 790
PinAI ACCGGT 1 cut(s) 432
PkrI GCNGC 6 cut(s) 365, 703, 1015, 1119, 1126, 1171
PleI GAGTC 4 cut(s) 570, 892, 952, 1133
PpsI GAGTC 4 cut(s) 570, 892, 952, 1133
PpuMI RGGWCCY 1 cut(s) 196
PscI ACATGT 1 cut(s) 774
Psp5II RGGWCCY 1 cut(s) 196
Psp6I CCWGG 3 cut(s) 167, 1111, 1356
PspGI CCWGG 3 cut(s) 167, 1111, 1356
PspN4I GGNNCC 2 cut(s) 198, 217
PspPI GGNCC 3 cut(s) 109, 196, 430
PspPPI RGGWCCY 1 cut(s) 196
PstI CTGCAG 2 cut(s) 706, 1228
PstNI CAGNNNCTG 1 cut(s) 710
PsuI RGATCY 1 cut(s) 215
RsaI GTAC 2 cut(s) 212, 593
RsaNI GTAC 2 cut(s) 211, 592
SaqAI TTAA 5 cut(s) 426, 582, 846, 1301, 1326
SatI GCNGC 6 cut(s) 364, 702, 1014, 1118, 1125, 1170
Sau3AI GATC 4 cut(s) 215, 526, 535, 603
Sau96I GGNCC 3 cut(s) 109, 196, 430
SchI GAGTC 4 cut(s) 570, 893, 953, 1133
ScrFI CCNGG 5 cut(s) 169, 269, 441, 1113, 1358
SfaNI GCATC 3 cut(s) 332, 445, 954
SfcI CTRYAG 3 cut(s) 702, 879, 1224
SinI GGWCC 3 cut(s) 109, 196, 430
SmlI CTYRAG 2 cut(s) 425, 581
SmoI CTYRAG 2 cut(s) 425, 581
Sse9I AATT 4 cut(s) 394, 414, 855, 1341
SseBI AGGCCT 1 cut(s) 133
SsiI CCGC 8 cut(s) 227, 458, 765, 814, 842, 1024, 1125, 1167
SspI AATATT 1 cut(s) 642
SspMI CTAG 3 cut(s) 471, 620, 1364
StuI AGGCCT 1 cut(s) 133
StyD4I CCNGG 5 cut(s) 167, 267, 439, 1111, 1356
StyI CCWWGG 1 cut(s) 634
TaaI ACNGT 3 cut(s) 311, 880, 1271
TaiI ACGT 1 cut(s) 522
TaqI TCGA 3 cut(s) 174, 962, 1002
TaqII GACCGA 1 cut(s) 754
TasI AATT 4 cut(s) 394, 414, 855, 1341
TauI GCSGC 1 cut(s) 1127
TfiI GAWTC 3 cut(s) 751, 931, 950
Tru1I TTAA 5 cut(s) 426, 582, 846, 1301, 1326
Tru9I TTAA 5 cut(s) 426, 582, 846, 1301, 1326
TscAI CASTG 3 cut(s) 316, 333, 1321
TseI GCWGC 5 cut(s) 363, 701, 1013, 1117, 1169
TspDTI ATGAA 5 cut(s) 51, 640, 764, 1090, 1272
TspGWI ACGGA 1 cut(s) 228
TspRI CASTG 3 cut(s) 316, 333, 1321
Van91I CCANNNNNTGG 1 cut(s) 790
Vha464I CTTAAG 2 cut(s) 425, 581
VpaK11BI GGWCC 3 cut(s) 109, 196, 430
XapI RAATTY 1 cut(s) 394
XceI RCATGY 1 cut(s) 778
XmiI GTMKAC 1 cut(s) 560
XmnI GAANNNNTTC 1 cut(s) 1241
XspI CTAG 3 cut(s) 471, 620, 1364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.