Photosynthetic NDH subunit of subcomplex B 1, chloroplastic
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G15980 |
| fragaria_vesca | FvH4_6g28640 FvH4_6g28640 FvH4_6g28640 |
| malus_domestica | MD17G1223300.v1.1 |
| prunus_persica | Prupe.3G098200_v2.0.a1 |
| pyrus_communis | pycom17g22730 |
| rosa_chinensis | RchiOBHm_Chr2g0132981 |
| rosa_laevigata | RLG00000019301 |
| rosa_multiflora | Rmu_sc0007314.1_g000011 Rmu_sc0019447.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00111580 |
| rosa_rugosa | Rorug02G0309100 |
| rosa_samantha | Rh2AG361300 Rh2BG367100 Rh2CG344600 Rh2DG384100 |
| rosa_wichuraiana | Rw2G029380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 893 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 883 |
| Acc36I | ACCTGC | 2 cut(s) | 614, 893 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 790 |
| AccBSI | CCGCTC | 1 cut(s) | 1127 |
| AccI | GTMKAC | 1 cut(s) | 560 |
| AccII | CGCG | 2 cut(s) | 227, 1026 |
| AciI | CCGC | 8 cut(s) | 227, 458, 765, 814, 842, 1024, 1125, 1167 |
| AclWI | GGATC | 3 cut(s) | 210, 223, 521 |
| AcoI | YGGCCR | 2 cut(s) | 3, 631 |
| AcsI | RAATTY | 1 cut(s) | 394 |
| AcuI | CTGAAG | 2 cut(s) | 780, 1338 |
| AfaI | GTAC | 2 cut(s) | 212, 593 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 205, 226, 790 |
| AflII | CTTAAG | 2 cut(s) | 425, 581 |
| AflIII | ACRYGT | 2 cut(s) | 519, 774 |
| AgeI | ACCGGT | 1 cut(s) | 432 |
| AgsI | TTSAA | 9 cut(s) | 100, 143, 292, 337, 496, 861, 954, 1178, 1348 |
| AjiI | CACGTC | 1 cut(s) | 520 |
| AjnI | CCWGG | 3 cut(s) | 167, 1111, 1356 |
| Alw26I | GTCTC | 2 cut(s) | 632, 799 |
| AlwI | GGATC | 3 cut(s) | 210, 223, 521 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 710 |
| AoxI | GGCC | 4 cut(s) | 3, 131, 254, 631 |
| ApeKI | GCWGC | 5 cut(s) | 363, 701, 1013, 1117, 1169 |
| ApoI | RAATTY | 1 cut(s) | 394 |
| AsiGI | ACCGGT | 1 cut(s) | 432 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1241 |
| AspS9I | GGNCC | 3 cut(s) | 109, 196, 430 |
| AsuC2I | CCSGG | 2 cut(s) | 269, 441 |
| AsuHPI | GGTGA | 4 cut(s) | 40, 73, 685, 773 |
| AsuNHI | GCTAGC | 1 cut(s) | 619 |
| AvaII | GGWCC | 3 cut(s) | 109, 196, 430 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BamHI | GGATCC | 1 cut(s) | 215 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 662, 694 |
| BbvI | GCAGC | 5 cut(s) | 350, 688, 1000, 1129, 1181 |
| BccI | CCATC | 4 cut(s) | 182, 504, 781, 1007 |
| BciT130I | CCWGG | 3 cut(s) | 169, 1113, 1358 |
| BciVI | GTATCC | 2 cut(s) | 299, 447 |
| BclI | TGATCA | 1 cut(s) | 535 |
| BcnI | CCSGG | 2 cut(s) | 269, 441 |
| BcoDI | GTCTC | 2 cut(s) | 632, 799 |
| BfaI | CTAG | 3 cut(s) | 471, 620, 1364 |
| BfmI | CTRYAG | 3 cut(s) | 702, 879, 1224 |
| BfrI | CTTAAG | 2 cut(s) | 425, 581 |
| BfuAI | ACCTGC | 2 cut(s) | 614, 893 |
| BfuI | GTATCC | 2 cut(s) | 299, 447 |
| BisI | GCNGC | 6 cut(s) | 364, 702, 1014, 1118, 1125, 1170 |
| BlsI | GCNGC | 6 cut(s) | 365, 703, 1015, 1119, 1126, 1171 |
| Bme1390I | CCNGG | 5 cut(s) | 169, 269, 441, 1113, 1358 |
| Bme18I | GGWCC | 3 cut(s) | 109, 196, 430 |
| BmgBI | CACGTC | 1 cut(s) | 520 |
| BmgT120I | GGNCC | 3 cut(s) | 109, 196, 430 |
| BmiI | GGNNCC | 2 cut(s) | 198, 217 |
| BmrFI | CCNGG | 5 cut(s) | 169, 269, 441, 1113, 1358 |
| BmsI | GCATC | 3 cut(s) | 332, 445, 954 |
| BmtI | GCTAGC | 1 cut(s) | 623 |
| Bpu10I | CCTNAGC | 1 cut(s) | 546 |
| BpuMI | CCSGG | 2 cut(s) | 269, 441 |
| BsaI | GGTCTC | 2 cut(s) | 632, 799 |
| BsaJI | CCNNGG | 5 cut(s) | 167, 634, 1111, 1112, 1356 |
| BsaWI | WCCGGW | 2 cut(s) | 409, 432 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 205, 226, 790 |
| Bse118I | RCCGGY | 1 cut(s) | 432 |
| Bse1I | ACTGG | 2 cut(s) | 333, 1185 |
| Bse3DI | GCAATG | 2 cut(s) | 118, 1206 |
| BseBI | CCWGG | 3 cut(s) | 169, 1113, 1358 |
| BseDI | CCNNGG | 5 cut(s) | 167, 634, 1111, 1112, 1356 |
| BseGI | GGATG | 5 cut(s) | 253, 355, 460, 823, 1283 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 205, 226, 790 |
| BseMI | GCAATG | 2 cut(s) | 118, 1206 |
| BseMII | CTCAG | 2 cut(s) | 537, 546 |
| BseNI | ACTGG | 2 cut(s) | 333, 1185 |
| BseRI | GAGGAG | 1 cut(s) | 1274 |
| BseXI | GCAGC | 5 cut(s) | 350, 688, 1000, 1129, 1181 |
| Bsh1236I | CGCG | 2 cut(s) | 227, 1026 |
| BshFI | GGCC | 4 cut(s) | 5, 133, 256, 633 |
| BshTI | ACCGGT | 1 cut(s) | 432 |
| BsiSI | CCGG | 4 cut(s) | 269, 410, 433, 441 |
| BslFI | GGGAC | 1 cut(s) | 1339 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 205, 226, 790 |
| BsmAI | GTCTC | 2 cut(s) | 632, 799 |
| BsmFI | GGGAC | 1 cut(s) | 1339 |
| BsnI | GGCC | 4 cut(s) | 5, 133, 256, 633 |
| Bso31I | GGTCTC | 2 cut(s) | 632, 799 |
| Bsp143I | GATC | 4 cut(s) | 215, 526, 535, 603 |
| Bsp19I | CCATGG | 1 cut(s) | 634 |
| BspACI | CCGC | 8 cut(s) | 227, 458, 765, 814, 842, 1024, 1125, 1167 |
| BspANI | GGCC | 4 cut(s) | 5, 133, 256, 633 |
| BspCNI | CTCAG | 2 cut(s) | 538, 547 |
| BspFNI | CGCG | 2 cut(s) | 227, 1026 |
| BspHI | TCATGA | 1 cut(s) | 651 |
| BspLI | GGNNCC | 2 cut(s) | 198, 217 |
| BspMAI | CTGCAG | 2 cut(s) | 706, 1228 |
| BspMI | ACCTGC | 2 cut(s) | 614, 893 |
| BspOI | GCTAGC | 1 cut(s) | 623 |
| BspPI | GGATC | 3 cut(s) | 210, 223, 521 |
| BspTI | CTTAAG | 2 cut(s) | 425, 581 |
| BspTNI | GGTCTC | 2 cut(s) | 632, 799 |
| BsrBI | CCGCTC | 1 cut(s) | 1127 |
| BsrDI | GCAATG | 2 cut(s) | 118, 1206 |
| BsrFI | RCCGGY | 1 cut(s) | 432 |
| BsrI | ACTGG | 2 cut(s) | 333, 1185 |
| BssAI | RCCGGY | 1 cut(s) | 432 |
| BssECI | CCNNGG | 5 cut(s) | 167, 634, 1111, 1112, 1356 |
| BssMI | GATC | 4 cut(s) | 215, 526, 535, 603 |
| BssNAI | GTATAC | 1 cut(s) | 561 |
| BssT1I | CCWWGG | 1 cut(s) | 634 |
| Bst1107I | GTATAC | 1 cut(s) | 561 |
| Bst2UI | CCWGG | 3 cut(s) | 169, 1113, 1358 |
| Bst4CI | ACNGT | 3 cut(s) | 311, 880, 1271 |
| Bst6I | CTCTTC | 1 cut(s) | 1251 |
| BstAFI | CTTAAG | 2 cut(s) | 425, 581 |
| BstC8I | GCNNGC | 7 cut(s) | 446, 483, 552, 621, 992, 1122, 1192 |
| BstDEI | CTNAG | 3 cut(s) | 546, 555, 972 |
| BstDSI | CCRYGG | 1 cut(s) | 634 |
| BstF5I | GGATG | 5 cut(s) | 253, 355, 460, 823, 1283 |
| BstFNI | CGCG | 2 cut(s) | 227, 1026 |
| BstKTI | GATC | 4 cut(s) | 218, 529, 538, 606 |
| BstMAI | GTCTC | 2 cut(s) | 632, 799 |
| BstMBI | GATC | 4 cut(s) | 215, 526, 535, 603 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 329, 707, 820 |
| BstNI | CCWGG | 3 cut(s) | 169, 1113, 1358 |
| BstNSI | RCATGY | 1 cut(s) | 778 |
| BstSCI | CCNGG | 5 cut(s) | 167, 267, 439, 1111, 1356 |
| BstSFI | CTRYAG | 3 cut(s) | 702, 879, 1224 |
| BstUI | CGCG | 2 cut(s) | 227, 1026 |
| BstV1I | GCAGC | 5 cut(s) | 350, 688, 1000, 1129, 1181 |
| BstX2I | RGATCY | 1 cut(s) | 215 |
| BstYI | RGATCY | 1 cut(s) | 215 |
| BstZ17I | GTATAC | 1 cut(s) | 561 |
| BsuI | GTATCC | 2 cut(s) | 299, 447 |
| BsuRI | GGCC | 4 cut(s) | 5, 133, 256, 633 |
| BtgI | CCRYGG | 1 cut(s) | 634 |
| BtrI | CACGTC | 1 cut(s) | 520 |
| BtsCI | GGATG | 5 cut(s) | 253, 355, 460, 823, 1283 |
| BtsIMutI | CAGTG | 3 cut(s) | 316, 326, 1314 |
| BveI | ACCTGC | 2 cut(s) | 614, 893 |
| Cac8I | GCNNGC | 7 cut(s) | 446, 483, 552, 621, 992, 1122, 1192 |
| CaiI | CAGNNNCTG | 1 cut(s) | 710 |
| CciI | TCATGA | 1 cut(s) | 651 |
| Cfr10I | RCCGGY | 1 cut(s) | 432 |
| Cfr13I | GGNCC | 3 cut(s) | 109, 196, 430 |
| Csp6I | GTAC | 2 cut(s) | 211, 592 |
| CspAI | ACCGGT | 1 cut(s) | 432 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 101, 136 |
| CviAII | CATG | 7 cut(s) | 205, 568, 601, 635, 652, 775, 1043 |
| CviQI | GTAC | 2 cut(s) | 211, 592 |
| DdeI | CTNAG | 3 cut(s) | 546, 555, 972 |
| DpnI | GATC | 4 cut(s) | 217, 528, 537, 605 |
| DpnII | GATC | 4 cut(s) | 215, 526, 535, 603 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 883 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 883 |
| EaeI | YGGCCR | 2 cut(s) | 3, 631 |
| Eam1104I | CTCTTC | 1 cut(s) | 1251 |
| EarI | CTCTTC | 1 cut(s) | 1251 |
| Eco130I | CCWWGG | 1 cut(s) | 634 |
| Eco147I | AGGCCT | 1 cut(s) | 133 |
| Eco31I | GGTCTC | 2 cut(s) | 632, 799 |
| Eco47I | GGWCC | 3 cut(s) | 109, 196, 430 |
| Eco57I | CTGAAG | 2 cut(s) | 780, 1338 |
| EcoO109I | RGGNCCY | 1 cut(s) | 196 |
| EcoRII | CCWGG | 3 cut(s) | 167, 1111, 1356 |
| EcoT14I | CCWWGG | 1 cut(s) | 634 |
| ErhI | CCWWGG | 1 cut(s) | 634 |
| FaeI | CATG | 7 cut(s) | 208, 571, 604, 638, 655, 778, 1046 |
| FaqI | GGGAC | 1 cut(s) | 1339 |
| FatI | CATG | 7 cut(s) | 204, 567, 600, 634, 651, 774, 1042 |
| FauI | CCCGC | 3 cut(s) | 758, 807, 849 |
| FbaI | TGATCA | 1 cut(s) | 535 |
| FblI | GTMKAC | 1 cut(s) | 560 |
| Fnu4HI | GCNGC | 6 cut(s) | 364, 702, 1014, 1118, 1125, 1170 |
| FokI | GGATG | 5 cut(s) | 260, 362, 467, 830, 1270 |
| Fsp4HI | GCNGC | 6 cut(s) | 364, 702, 1014, 1118, 1125, 1170 |
| FspBI | CTAG | 3 cut(s) | 471, 620, 1364 |
| GluI | GCNGC | 6 cut(s) | 364, 702, 1014, 1118, 1125, 1170 |
| HaeIII | GGCC | 4 cut(s) | 5, 133, 256, 633 |
| HapII | CCGG | 4 cut(s) | 269, 410, 433, 441 |
| Hin1II | CATG | 7 cut(s) | 208, 571, 604, 638, 655, 778, 1046 |
| HindIII | AAGCTT | 2 cut(s) | 483, 831 |
| HinfI | GANTC | 7 cut(s) | 576, 751, 884, 931, 944, 950, 1139 |
| HpaII | CCGG | 4 cut(s) | 269, 410, 433, 441 |
| HphI | GGTGA | 4 cut(s) | 40, 73, 685, 773 |
| Hpy166II | GTNNAC | 2 cut(s) | 561, 697 |
| Hpy188I | TCNGA | 2 cut(s) | 727, 949 |
| Hpy188III | TCNNGA | 4 cut(s) | 289, 530, 545, 652 |
| Hpy8I | GTNNAC | 2 cut(s) | 561, 697 |
| HpyAV | CCTTC | 7 cut(s) | 43, 69, 149, 664, 755, 1042, 1225 |
| HpyCH4III | ACNGT | 3 cut(s) | 311, 880, 1271 |
| HpyCH4IV | ACGT | 1 cut(s) | 519 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 329, 707, 820 |
| HpyF3I | CTNAG | 3 cut(s) | 546, 555, 972 |
| HpySE526I | ACGT | 1 cut(s) | 519 |
| Hsp92II | CATG | 7 cut(s) | 208, 571, 604, 638, 655, 778, 1046 |
| Ksp22I | TGATCA | 1 cut(s) | 535 |
| Kzo9I | GATC | 4 cut(s) | 215, 526, 535, 603 |
| LmnI | GCTCC | 1 cut(s) | 707 |
| Lsp1109I | GCAGC | 5 cut(s) | 350, 688, 1000, 1129, 1181 |
| LweI | GCATC | 3 cut(s) | 332, 445, 954 |
| MaeI | CTAG | 3 cut(s) | 471, 620, 1364 |
| MaeII | ACGT | 1 cut(s) | 519 |
| MalI | GATC | 4 cut(s) | 217, 528, 537, 605 |
| MbiI | CCGCTC | 1 cut(s) | 1127 |
| MboI | GATC | 4 cut(s) | 215, 526, 535, 603 |
| MboII | GAAGA | 5 cut(s) | 169, 172, 1094, 1268, 1276 |
| MflI | RGATCY | 1 cut(s) | 215 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 4 cut(s) | 394, 414, 855, 1341 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 4 cut(s) | 570, 893, 953, 1133 |
| MmeI | TCCRAC | 4 cut(s) | 553, 921, 927, 1057 |
| MnlI | CCTC | 9 cut(s) | 79, 187, 238, 336, 351, 467, 970, 1060, 1252 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1241 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 5 cut(s) | 426, 582, 846, 1301, 1326 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspCI | CTTAAG | 2 cut(s) | 425, 581 |
| MspI | CCGG | 4 cut(s) | 269, 410, 433, 441 |
| MspR9I | CCNGG | 5 cut(s) | 169, 269, 441, 1113, 1358 |
| MvaI | CCWGG | 3 cut(s) | 169, 1113, 1358 |
| MvnI | CGCG | 2 cut(s) | 227, 1026 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 329, 707, 820 |
| NciI | CCSGG | 2 cut(s) | 269, 441 |
| NcoI | CCATGG | 1 cut(s) | 634 |
| NdeII | GATC | 4 cut(s) | 215, 526, 535, 603 |
| NheI | GCTAGC | 1 cut(s) | 619 |
| NlaIII | CATG | 7 cut(s) | 208, 571, 604, 638, 655, 778, 1046 |
| NlaIV | GGNNCC | 2 cut(s) | 198, 217 |
| NmeAIII | GCCGAG | 2 cut(s) | 609, 1121 |
| NspI | RCATGY | 1 cut(s) | 778 |
| PagI | TCATGA | 1 cut(s) | 651 |
| PaqCI | CACCTGC | 1 cut(s) | 893 |
| PasI | CCCWGGG | 1 cut(s) | 1112 |
| PceI | AGGCCT | 1 cut(s) | 133 |
| PciI | ACATGT | 1 cut(s) | 774 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1251 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1241 |
| PfeI | GAWTC | 3 cut(s) | 751, 931, 950 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 790 |
| PinAI | ACCGGT | 1 cut(s) | 432 |
| PkrI | GCNGC | 6 cut(s) | 365, 703, 1015, 1119, 1126, 1171 |
| PleI | GAGTC | 4 cut(s) | 570, 892, 952, 1133 |
| PpsI | GAGTC | 4 cut(s) | 570, 892, 952, 1133 |
| PpuMI | RGGWCCY | 1 cut(s) | 196 |
| PscI | ACATGT | 1 cut(s) | 774 |
| Psp5II | RGGWCCY | 1 cut(s) | 196 |
| Psp6I | CCWGG | 3 cut(s) | 167, 1111, 1356 |
| PspGI | CCWGG | 3 cut(s) | 167, 1111, 1356 |
| PspN4I | GGNNCC | 2 cut(s) | 198, 217 |
| PspPI | GGNCC | 3 cut(s) | 109, 196, 430 |
| PspPPI | RGGWCCY | 1 cut(s) | 196 |
| PstI | CTGCAG | 2 cut(s) | 706, 1228 |
| PstNI | CAGNNNCTG | 1 cut(s) | 710 |
| PsuI | RGATCY | 1 cut(s) | 215 |
| RsaI | GTAC | 2 cut(s) | 212, 593 |
| RsaNI | GTAC | 2 cut(s) | 211, 592 |
| SaqAI | TTAA | 5 cut(s) | 426, 582, 846, 1301, 1326 |
| SatI | GCNGC | 6 cut(s) | 364, 702, 1014, 1118, 1125, 1170 |
| Sau3AI | GATC | 4 cut(s) | 215, 526, 535, 603 |
| Sau96I | GGNCC | 3 cut(s) | 109, 196, 430 |
| SchI | GAGTC | 4 cut(s) | 570, 893, 953, 1133 |
| ScrFI | CCNGG | 5 cut(s) | 169, 269, 441, 1113, 1358 |
| SfaNI | GCATC | 3 cut(s) | 332, 445, 954 |
| SfcI | CTRYAG | 3 cut(s) | 702, 879, 1224 |
| SinI | GGWCC | 3 cut(s) | 109, 196, 430 |
| SmlI | CTYRAG | 2 cut(s) | 425, 581 |
| SmoI | CTYRAG | 2 cut(s) | 425, 581 |
| Sse9I | AATT | 4 cut(s) | 394, 414, 855, 1341 |
| SseBI | AGGCCT | 1 cut(s) | 133 |
| SsiI | CCGC | 8 cut(s) | 227, 458, 765, 814, 842, 1024, 1125, 1167 |
| SspI | AATATT | 1 cut(s) | 642 |
| SspMI | CTAG | 3 cut(s) | 471, 620, 1364 |
| StuI | AGGCCT | 1 cut(s) | 133 |
| StyD4I | CCNGG | 5 cut(s) | 167, 267, 439, 1111, 1356 |
| StyI | CCWWGG | 1 cut(s) | 634 |
| TaaI | ACNGT | 3 cut(s) | 311, 880, 1271 |
| TaiI | ACGT | 1 cut(s) | 522 |
| TaqI | TCGA | 3 cut(s) | 174, 962, 1002 |
| TaqII | GACCGA | 1 cut(s) | 754 |
| TasI | AATT | 4 cut(s) | 394, 414, 855, 1341 |
| TauI | GCSGC | 1 cut(s) | 1127 |
| TfiI | GAWTC | 3 cut(s) | 751, 931, 950 |
| Tru1I | TTAA | 5 cut(s) | 426, 582, 846, 1301, 1326 |
| Tru9I | TTAA | 5 cut(s) | 426, 582, 846, 1301, 1326 |
| TscAI | CASTG | 3 cut(s) | 316, 333, 1321 |
| TseI | GCWGC | 5 cut(s) | 363, 701, 1013, 1117, 1169 |
| TspDTI | ATGAA | 5 cut(s) | 51, 640, 764, 1090, 1272 |
| TspGWI | ACGGA | 1 cut(s) | 228 |
| TspRI | CASTG | 3 cut(s) | 316, 333, 1321 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 790 |
| Vha464I | CTTAAG | 2 cut(s) | 425, 581 |
| VpaK11BI | GGWCC | 3 cut(s) | 109, 196, 430 |
| XapI | RAATTY | 1 cut(s) | 394 |
| XceI | RCATGY | 1 cut(s) | 778 |
| XmiI | GTMKAC | 1 cut(s) | 560 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1241 |
| XspI | CTAG | 3 cut(s) | 471, 620, 1364 |