pycom17g23020

Belongs to the TUB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0007280
Physical Location & Seq
Reverse (-)
21401868 .. 21404591
2724 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1269 bp
ATGGCTGGTTGCAAGAAAACCACATTAGTTCTACGGCAATCCTCATACAACTCTCTCTATGTCGATCCCCTCGCATACCAGAAACACAGCGGCAGCCACAGCCAAGGCATCGCCTTCATCTCCAAGAACGGCAATTCGGAGCCGAACCCATCAGCCTTAAACGTCAACAAAGAGAACGCAATGCCCAAGAAGCCACAGAAGGCCGTGCCCGACAGCGACAAGGAGAATTTGGTCGCACATGAACATGGGTCTTCCTCTTTTGCGATGCAGCCATTGAAGCAGAGGAACTTGAAGTCTCTGTCCACTGGCTGCAGGGCCCTGAAGCCCTCCTCGCTTCAGTTCTGTATGCAGGCGAGCGAGCCGGAGAAGGCACTCTTCGGTGGGTCCACAATGTGGGACCCGCCCAGCAATGGGTCCGACAACTCGAGCTCTTTGAACATCTGGGACTACTCCGACTCTGAGGCTGCCCCTGCCTCCTCTTGGTCTACACTGCCTAACAAGTCATTGCTTTGCAGGCCATTGCCAATGGATGTGGGAAGATGCACATGTGTGATAGTGAAGGAAGCAACCACAGAAGCAATAGATGGGGGCACTCTCTATTCTCTTTATACCAATGAAGGCAAGGGAAGGCAGGACCGGAAACTAGCTATTGCTCACCATAAGCGGCGGAATGGGAAATCTGAGTTGACAATTGCTCAGAATGTGAAGGGAATACTGTCTCATTCGGATGACAGTTTTATTGGTATTGTAAATGCTAACCTCATGGGTTCAAAATACCACATATGGGATCAGGGTGGTCATCCCAATTCCTTGAGCAAAGAGGCTAAATCACTTGCCATTGTAGCGTTCACGCCAACAATCCCGAGCTGGACAGGAAGTTACAGACGTATAAGGGCATATATACCCAAGCACCAATCCATGCAGTTAAAGAACACAACGCAGGTACAACACAGTAAGGGACTCCCAAAGGACTGGGAAGGGAAGCTTGACAAAGTTCATCAGCTATCCTCAAGGGTTCCCCATTACAATAAAATTTCAAAGCAGTATGAGCTAGATTTCAGAGACAGGGGAAGAGCGGGTCTTAGAATCCAAAGTTCAGTCAAGAATTTCCAACTGACACTGGAGGAGAACGGAAAGCAGACAATTCTGCAGCTCGGAAGGGTTGGAAAATCAAAGTATGTGATGGATTACAGATATCCTTTGACAGGCTACCAAGCGTTTTGCATATGCTTGTCTTCAATTGATTCAAAGCTTTGTTGCACTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005543 GO:0008289 GO:0035091 GO:0043167 GO:0043168
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tub

Protein Analysis

423

Amino Acids

46.72

Weight (kDa)

9.46

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tub PF01167 170 - 416 2.4e-48 Tub family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 931
AccB7I CCANNNNNTGG 1 cut(s) 393
AccBSI CCGCTC 1 cut(s) 1076
AccI GTMKAC 1 cut(s) 485
AciI CCGC 5 cut(s) 90, 401, 664, 667, 1076
AclWI GGATC 2 cut(s) 59, 795
AcsI RAATTY 3 cut(s) 226, 1032, 1105
AcuI CTGAAG 2 cut(s) 320, 341
AdeI CACNNNGTG 1 cut(s) 393
AfaI GTAC 1 cut(s) 945
AfiI CCNNNNNNNGG 6 cut(s) 393, 410, 411, 480, 784, 1205
AflIII ACRYGT 1 cut(s) 545
AgsI TTSAA 7 cut(s) 277, 292, 436, 771, 1038, 1239, 1248
AleI CACNNNNGTG 1 cut(s) 548
AluBI AGCT 8 cut(s) 429, 647, 867, 985, 1003, 1051, 1153, 1252
AluI AGCT 8 cut(s) 429, 647, 867, 985, 1003, 1051, 1153, 1252
Alw21I GWGCWC 1 cut(s) 431
Alw26I GTCTC 3 cut(s) 300, 723, 1056
AlwI GGATC 2 cut(s) 59, 795
Ama87I CYCGRG 2 cut(s) 424, 862
AoxI GGCC 3 cut(s) 201, 315, 515
ApaI GGGCCC 1 cut(s) 319
ApeKI GCWGC 5 cut(s) 93, 268, 309, 464, 1150
ApoI RAATTY 3 cut(s) 226, 1032, 1105
AspS9I GGNCC 6 cut(s) 315, 316, 384, 397, 414, 634
AsuHPI GGTGA 1 cut(s) 647
AvaI CYCGRG 2 cut(s) 424, 862
AvaII GGWCC 4 cut(s) 384, 397, 414, 634
BaeGI GKGCMC 3 cut(s) 210, 319, 593
BanII GRGCYC 2 cut(s) 319, 431
BbsI GAAGAC 2 cut(s) 243, 1227
Bbv12I GWGCWC 1 cut(s) 431
BbvI GCAGC 5 cut(s) 105, 280, 296, 451, 1162
BccI CCATC 3 cut(s) 157, 578, 1177
BceAI ACGGC 3 cut(s) 50, 145, 188
BcoDI GTCTC 3 cut(s) 300, 723, 1056
BfaI CTAG 2 cut(s) 644, 1052
BfmI CTRYAG 2 cut(s) 310, 1148
BfuAI ACCTGC 1 cut(s) 931
BisI GCNGC 7 cut(s) 91, 94, 269, 310, 465, 665, 1151
BlsI GCNGC 7 cut(s) 92, 95, 270, 311, 466, 666, 1152
Bme18I GGWCC 4 cut(s) 384, 397, 414, 634
BmeT110I CYCGRG 2 cut(s) 424, 862
BmgT120I GGNCC 6 cut(s) 315, 316, 384, 397, 414, 634
BmiI GGNNCC 7 cut(s) 141, 317, 385, 398, 399, 415, 1017
BmrI ACTGGG 1 cut(s) 982
BmsI GCATC 3 cut(s) 117, 255, 530
BmuI ACTGGG 1 cut(s) 982
BpiI GAAGAC 2 cut(s) 243, 1227
BpmI CTGGAG 1 cut(s) 1142
BpuEI CTTGAG 2 cut(s) 832, 994
BsaJI CCNNGG 1 cut(s) 103
BsaWI WCCGGW 1 cut(s) 636
Bsc4I CCNNNNNNNGG 6 cut(s) 393, 410, 411, 480, 784, 1205
Bse1I ACTGG 3 cut(s) 310, 977, 1125
Bse3DI GCAATG 4 cut(s) 186, 415, 503, 518
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 3 cut(s) 535, 733, 799
BseLI CCNNNNNNNGG 6 cut(s) 393, 410, 411, 480, 784, 1205
BseMI GCAATG 4 cut(s) 186, 415, 503, 518
BseMII CTCAG 3 cut(s) 450, 672, 710
BseNI ACTGG 3 cut(s) 310, 977, 1125
BseRI GAGGAG 3 cut(s) 319, 466, 1139
BseSI GKGCMC 3 cut(s) 210, 319, 593
BseXI GCAGC 5 cut(s) 105, 280, 296, 451, 1162
BseYI CCCAGC 1 cut(s) 404
BshFI GGCC 3 cut(s) 203, 317, 517
BsiHKAI GWGCWC 1 cut(s) 431
BsiHKCI CYCGRG 2 cut(s) 424, 862
BsiSI CCGG 2 cut(s) 362, 637
BslFI GGGAC 3 cut(s) 410, 458, 972
BslI CCNNNNNNNGG 6 cut(s) 393, 410, 411, 480, 784, 1205
BsmAI GTCTC 3 cut(s) 300, 723, 1056
BsmFI GGGAC 3 cut(s) 410, 458, 972
BsnI GGCC 3 cut(s) 203, 317, 517
BsoBI CYCGRG 2 cut(s) 424, 862
Bsp120I GGGCCC 1 cut(s) 315
Bsp1286I GDGCHC 4 cut(s) 210, 319, 431, 593
Bsp143I GATC 2 cut(s) 64, 787
BspACI CCGC 5 cut(s) 90, 401, 664, 667, 1076
BspANI GGCC 3 cut(s) 203, 317, 517
BspCNI CTCAG 3 cut(s) 451, 673, 709
BspLI GGNNCC 7 cut(s) 141, 317, 385, 398, 399, 415, 1017
BspMAI CTGCAG 2 cut(s) 314, 1152
BspMI ACCTGC 1 cut(s) 931
BspPI GGATC 2 cut(s) 59, 795
BspQI GCTCTTC 1 cut(s) 1066
BsrBI CCGCTC 1 cut(s) 1076
BsrDI GCAATG 4 cut(s) 186, 415, 503, 518
BsrI ACTGG 3 cut(s) 310, 977, 1125
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 2 cut(s) 64, 787
BssT1I CCWWGG 1 cut(s) 103
Bst4CI ACNGT 4 cut(s) 717, 734, 953, 1264
Bst6I CTCTTC 2 cut(s) 380, 1066
BstC8I GCNNGC 4 cut(s) 351, 355, 359, 515
BstDEI CTNAG 4 cut(s) 459, 681, 696, 1082
BstENI CCTNNNNNAGG 1 cut(s) 1203
BstF5I GGATG 3 cut(s) 535, 733, 799
BstKTI GATC 2 cut(s) 67, 790
BstMAI GTCTC 3 cut(s) 300, 723, 1056
BstMBI GATC 2 cut(s) 64, 787
BstMWI GCNNNNNNNGC 8 cut(s) 99, 190, 277, 331, 470, 514, 842, 1048
BstNSI RCATGY 1 cut(s) 549
BstSFI CTRYAG 2 cut(s) 310, 1148
BstSLI GKGCMC 3 cut(s) 210, 319, 593
BstV1I GCAGC 5 cut(s) 105, 280, 296, 451, 1162
BstV2I GAAGAC 2 cut(s) 243, 1227
BstXI CCANNNNNNTGG 1 cut(s) 972
BsuRI GGCC 3 cut(s) 203, 317, 517
BtgZI GCGATG 2 cut(s) 94, 278
BtsCI GGATG 3 cut(s) 535, 733, 799
BtsI GCAGTG 1 cut(s) 488
BtsIMutI CAGTG 4 cut(s) 303, 488, 1118, 1260
BveI ACCTGC 1 cut(s) 931
Cac8I GCNNGC 4 cut(s) 351, 355, 359, 515
Cfr13I GGNCC 6 cut(s) 315, 316, 384, 397, 414, 634
Csp6I GTAC 1 cut(s) 944
CspCI CAANNNNNGTGG 2 cut(s) 513, 548
CviAII CATG 5 cut(s) 239, 245, 546, 763, 919
CviQI GTAC 1 cut(s) 944
DdeI CTNAG 4 cut(s) 459, 681, 696, 1082
DpnI GATC 2 cut(s) 66, 789
DpnII GATC 2 cut(s) 64, 787
DraIII CACNNNGTG 1 cut(s) 393
Eam1104I CTCTTC 2 cut(s) 380, 1066
EarI CTCTTC 2 cut(s) 380, 1066
EciI GGCGGA 1 cut(s) 682
Ecl136II GAGCTC 1 cut(s) 429
Eco130I CCWWGG 1 cut(s) 103
Eco24I GRGCYC 2 cut(s) 319, 431
Eco32I GATATC 1 cut(s) 1196
Eco47I GGWCC 4 cut(s) 384, 397, 414, 634
Eco53kI GAGCTC 1 cut(s) 429
Eco57I CTGAAG 2 cut(s) 320, 341
Eco88I CYCGRG 2 cut(s) 424, 862
EcoICRI GAGCTC 1 cut(s) 429
EcoNI CCTNNNNNAGG 1 cut(s) 1203
EcoO109I RGGNCCY 3 cut(s) 315, 316, 397
EcoRV GATATC 1 cut(s) 1196
EcoT14I CCWWGG 1 cut(s) 103
EcoT38I GRGCYC 2 cut(s) 319, 431
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 5 cut(s) 242, 248, 549, 766, 922
FalI AAGNNNNNCTT 4 cut(s) 359, 391, 969, 1001
FaqI GGGAC 3 cut(s) 410, 458, 972
FatI CATG 5 cut(s) 238, 244, 545, 762, 918
FauI CCCGC 2 cut(s) 408, 1069
FauNDI CATATG 2 cut(s) 782, 1226
FblI GTMKAC 1 cut(s) 485
Fnu4HI GCNGC 7 cut(s) 91, 94, 269, 310, 465, 665, 1151
FokI GGATG 3 cut(s) 542, 740, 786
FriOI GRGCYC 2 cut(s) 319, 431
Fsp4HI GCNGC 7 cut(s) 91, 94, 269, 310, 465, 665, 1151
FspBI CTAG 2 cut(s) 644, 1052
GluI GCNGC 7 cut(s) 91, 94, 269, 310, 465, 665, 1151
GsaI CCCAGC 1 cut(s) 408
GsuI CTGGAG 1 cut(s) 1142
HaeIII GGCC 3 cut(s) 203, 317, 517
HapII CCGG 2 cut(s) 362, 637
Hin1II CATG 5 cut(s) 242, 248, 549, 766, 922
HincII GTYRAC 2 cut(s) 166, 687
HindII GTYRAC 2 cut(s) 166, 687
HindIII AAGCTT 2 cut(s) 983, 1250
HinfI GANTC 4 cut(s) 455, 960, 1086, 1244
HpaII CCGG 2 cut(s) 362, 637
HphI GGTGA 1 cut(s) 647
Hpy166II GTNNAC 6 cut(s) 166, 303, 387, 486, 687, 849
Hpy188I TCNGA 9 cut(s) 139, 418, 454, 460, 682, 699, 727, 1061, 1157
Hpy188III TCNNGA 2 cut(s) 862, 1102
Hpy8I GTNNAC 6 cut(s) 166, 303, 387, 486, 687, 849
HpyAV CCTTC 9 cut(s) 124, 193, 361, 553, 611, 621, 700, 971, 1152
HpyCH4III ACNGT 4 cut(s) 717, 734, 953, 1264
HpyCH4IV ACGT 2 cut(s) 162, 886
HpyF10VI GCNNNNNNNGC 8 cut(s) 99, 190, 277, 331, 470, 514, 842, 1048
HpyF3I CTNAG 4 cut(s) 459, 681, 696, 1082
HpySE526I ACGT 2 cut(s) 162, 886
Hsp92II CATG 5 cut(s) 242, 248, 549, 766, 922
KflI GGGWCCC 1 cut(s) 397
Kzo9I GATC 2 cut(s) 64, 787
LguI GCTCTTC 1 cut(s) 1066
LmnI GCTCC 1 cut(s) 139
Lsp1109I GCAGC 5 cut(s) 105, 280, 296, 451, 1162
LweI GCATC 3 cut(s) 117, 255, 530
MaeI CTAG 2 cut(s) 644, 1052
MaeII ACGT 2 cut(s) 162, 886
MaeIII GTNAC 1 cut(s) 878
MalI GATC 2 cut(s) 66, 789
MbiI CCGCTC 1 cut(s) 1076
MboI GATC 2 cut(s) 64, 787
MboII GAAGA 5 cut(s) 243, 367, 549, 1083, 1227
MfeI CAATTG 2 cut(s) 690, 1239
MhlI GDGCHC 4 cut(s) 210, 319, 431, 593
MluCI AATT 8 cut(s) 133, 226, 690, 805, 1032, 1105, 1143, 1239
MlyI GAGTC 2 cut(s) 449, 954
MmeI TCCRAC 4 cut(s) 441, 477, 1135, 1144
MseI TTAA 2 cut(s) 158, 926
MslI CAYNNNNRTG 3 cut(s) 243, 548, 726
MspA1I CMGCKG 1 cut(s) 90
MspI CCGG 2 cut(s) 362, 637
MunI CAATTG 2 cut(s) 690, 1239
MwoI GCNNNNNNNGC 8 cut(s) 99, 190, 277, 331, 470, 514, 842, 1048
NdeI CATATG 2 cut(s) 782, 1226
NdeII GATC 2 cut(s) 64, 787
NlaIII CATG 5 cut(s) 242, 248, 549, 766, 922
NlaIV GGNNCC 7 cut(s) 141, 317, 385, 398, 399, 415, 1017
NspI RCATGY 1 cut(s) 549
OliI CACNNNNGTG 1 cut(s) 548
PaeR7I CTCGAG 1 cut(s) 424
PciI ACATGT 1 cut(s) 545
PciSI GCTCTTC 1 cut(s) 1066
PfeI GAWTC 2 cut(s) 1086, 1244
PflMI CCANNNNNTGG 1 cut(s) 393
PkrI GCNGC 7 cut(s) 92, 95, 270, 311, 466, 666, 1152
PleI GAGTC 2 cut(s) 449, 954
PpsI GAGTC 2 cut(s) 449, 954
PpuMI RGGWCCY 1 cut(s) 397
PscI ACATGT 1 cut(s) 545
Psp124BI GAGCTC 1 cut(s) 431
Psp5II RGGWCCY 1 cut(s) 397
PspFI CCCAGC 1 cut(s) 404
PspN4I GGNNCC 7 cut(s) 141, 317, 385, 398, 399, 415, 1017
PspOMI GGGCCC 1 cut(s) 315
PspPI GGNCC 6 cut(s) 315, 316, 384, 397, 414, 634
PspPPI RGGWCCY 1 cut(s) 397
PspXI VCTCGAGB 1 cut(s) 424
PstI CTGCAG 2 cut(s) 314, 1152
RsaI GTAC 1 cut(s) 945
RsaNI GTAC 1 cut(s) 944
RseI CAYNNNNRTG 3 cut(s) 243, 548, 726
SacI GAGCTC 1 cut(s) 431
SapI GCTCTTC 1 cut(s) 1066
SaqAI TTAA 2 cut(s) 158, 926
SatI GCNGC 7 cut(s) 91, 94, 269, 310, 465, 665, 1151
Sau3AI GATC 2 cut(s) 64, 787
Sau96I GGNCC 6 cut(s) 315, 316, 384, 397, 414, 634
SchI GAGTC 2 cut(s) 449, 954
SduI GDGCHC 4 cut(s) 210, 319, 431, 593
SfaNI GCATC 3 cut(s) 117, 255, 530
SfcI CTRYAG 2 cut(s) 310, 1148
Sfr274I CTCGAG 1 cut(s) 424
SinI GGWCC 4 cut(s) 384, 397, 414, 634
SlaI CTCGAG 1 cut(s) 424
SmiMI CAYNNNNRTG 3 cut(s) 243, 548, 726
SmlI CTYRAG 3 cut(s) 424, 811, 1009
SmoI CTYRAG 3 cut(s) 424, 811, 1009
Sse9I AATT 8 cut(s) 133, 226, 690, 805, 1032, 1105, 1143, 1239
SsiI CCGC 5 cut(s) 90, 401, 664, 667, 1076
SspMI CTAG 2 cut(s) 644, 1052
SstI GAGCTC 1 cut(s) 431
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 4 cut(s) 717, 734, 953, 1264
TaiI ACGT 2 cut(s) 165, 889
TaqI TCGA 2 cut(s) 63, 425
TasI AATT 8 cut(s) 133, 226, 690, 805, 1032, 1105, 1143, 1239
TauI GCSGC 2 cut(s) 93, 667
TfiI GAWTC 2 cut(s) 1086, 1244
Tru1I TTAA 2 cut(s) 158, 926
Tru9I TTAA 2 cut(s) 158, 926
TscAI CASTG 4 cut(s) 310, 495, 1125, 1267
TseI GCWGC 5 cut(s) 93, 268, 309, 464, 1150
TspDTI ATGAA 4 cut(s) 106, 255, 630, 986
TspGWI ACGGA 1 cut(s) 1146
TspRI CASTG 4 cut(s) 310, 495, 1125, 1267
Van91I CCANNNNNTGG 1 cut(s) 393
VpaK11BI GGWCC 4 cut(s) 384, 397, 414, 634
XagI CCTNNNNNAGG 1 cut(s) 1203
XapI RAATTY 3 cut(s) 226, 1032, 1105
XceI RCATGY 1 cut(s) 549
XhoI CTCGAG 1 cut(s) 424
XmiI GTMKAC 1 cut(s) 485
XspI CTAG 2 cut(s) 644, 1052
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.