pycom17g23070

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
21480660 .. 21482180
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1521 bp
ATGGTCTTCCATGTTCAGAAATGCTTTAAAAGTCTTCGCTTCCGACACAGTACTTCAAAACCTCGCTCCTTTTTCCATACCTCTCCTGAAAATTGCTCATCTGCTCTTTCTTCAATTTTGTCTTCTCCGCTGGGATCGTCACAGTTTGAAGACTCTACAAGACTATCTGACCTTGACATCATCATATCTAAAGCATCTGTTGGAAGCAGTGATGATGAAGTTCTACAGTCTCTTGCACAAGATCAAGCATGTAATAGCATTCAGCTCACGGATAAACTTGTTGATCAACTATTTCATCGGTTTAAGAATGATTGGAAGTCTGCATTGGGTGTATTTAGATGGGTAGAGTTACGCTCCGACTATAAACCCACCCCAGATGCATATGATTTTGTAGTTGACATTTTGGGTAAAATGAAGCAAATGGATAAGATAACGGGTTTGTTAGAAAAAATGCGCCAGGATCATCTGGTGACTCTTAACACCGTAGGTAAGGTTATGAGAAGGTTTGCCGGTGCAGGGAAATGGGAGGACTCTGTGAGGATATTTGATGATTTAGGAAGTTTTGGTTTGGAGAAGAACACAGAATCTATGAACTTATTGCTTGACACTCTTTGCAAGGAAAACAAAGTTGAGAAGGCCCGTCAGATCTTCTTAGAGCTGAAATCACATATCTCCCCCAATGCTAATACCTTTAACATTTTCATTCACGGTTGGTGCAAGATCAAACGGGTTGACGAGGCACATTGGACAATCCAGGAGATGAAGGGACATGGCTATCGCCCTTGTGTCATCAGTTACTCAACCATTGTCCTCTTTTATTGCCACCAATACAATTTTGGTAAGGTCTATGAATTGTTTGATGAAATGGAAGCTCAGGGGTGCCCTCCAAATGTCGTCACGTATACCTCTGTCATGTGTTTTCTAGCAAAGTCTGAGGAGTTTGAGGAAGCTTTGCAGTTATATGAGAGAATGAAATCTGCTGGATGTGATCCTGATACACTTTTCTACAATTCACTGATCCACACACTAGGAAGAGCTGGCCGAGTCGGGGAGGCTGTTCAGGTCTTCAACGTCGAAATGCCTGAAAAGGGGGTTTCTCCTAATACATCGACTTACAATACAATGATTGCCATGTTTTGCCACCACGGGGAAGAGCAAAAGGCCTTTAATGTCCTCCTGCAGATGGAAAATGCAGGGTTATGTAAACCTGATGTTCAGACGTACTATCCATTGCTTAAAATGTGCTTCAAAACTGGAAAAATAGACGATTGTTTGACTCAATTATTGAATGACATGGTCAACAGACATCATCTCAGTCTCGACCTCTCCAGCTATACCCTTTTGATTCATGGACTATGCAGAGCAAATAGATGCGAGTGGGCTTACCTTCTCTTCAAGGAGATGATTGGTCAAGAGATAAAGCCTAGGTACAAGACATGTCGTTTTCTCTGGGACGAAGTGAAACTGAAGAATATGTTTGCCGCTGCTGATACCATTGAAGATTTCATGAAGAAACTATAG

Protein Analysis

507

Amino Acids

58.13

Weight (kDa)

6.6

Isoelectric Point (pI)

32.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 193 - 240 3.9e-10 PPR repeat family
PPR_1 PF12854 224 - 248 4e-06 PPR repeat
PPR_2 PF13041 226 - 269 7.2e-07 PPR repeat family
PPR_2 PF13041 261 - 309 4.8e-11 PPR repeat family
PPR_long PF17177 279 - 355 1.1e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 285 - 344 3.6e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 296 - 333 1.4e-09 PPR repeat family
PPR PF01535 299 - 329 3.6e-06 PPR repeat
PPR_1 PF12854 328 - 357 6.6e-08 PPR repeat
PPR_2 PF13041 331 - 381 2.8e-13 PPR repeat family
PPR_long PF17177 354 - 450 1.9e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 359 - 415 1.4e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 363 - 396 1.8e-07 PPR repeat
PPR_2 PF13041 367 - 417 3.4e-10 PPR repeat family
PPR_1 PF12854 438 - 468 2.1e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 879
AccI GTMKAC 1 cut(s) 902
AciI CCGC 2 cut(s) 128, 1482
AclWI GGATC 4 cut(s) 142, 468, 983, 1012
AcoI YGGCCR 1 cut(s) 1039
AcuI CTGAAG 1 cut(s) 1487
AfaI GTAC 3 cut(s) 52, 1223, 1430
AfiI CCNNNNNNNGG 5 cut(s) 516, 1048, 1088, 1147, 1183
AflIII ACRYGT 1 cut(s) 1436
AgsI TTSAA 8 cut(s) 57, 114, 149, 1069, 1249, 1288, 1396, 1499
AjnI CCWGG 2 cut(s) 456, 753
AjuI GAANNNNNNNTTGG 2 cut(s) 308, 340
AluBI AGCT 6 cut(s) 265, 658, 872, 950, 1037, 1332
AluI AGCT 6 cut(s) 265, 658, 872, 950, 1037, 1332
Alw26I GTCTC 2 cut(s) 234, 1322
AlwI GGATC 4 cut(s) 142, 468, 983, 1012
AoxI GGCC 3 cut(s) 636, 1039, 1161
ApeKI GCWGC 1 cut(s) 1484
AspA2I CCTAGG 1 cut(s) 1424
AspLEI GCGC 1 cut(s) 456
AspS9I GGNCC 1 cut(s) 637
AsuHPI GGTGA 1 cut(s) 481
AvrII CCTAGG 1 cut(s) 1424
BaeGI GKGCMC 1 cut(s) 884
BanI GGYRCC 1 cut(s) 879
BbsI GAAGAC 4 cut(s) 26, 114, 156, 1057
BbvI GCAGC 1 cut(s) 1471
BccI CCATC 2 cut(s) 333, 1177
BciT130I CCWGG 2 cut(s) 458, 755
BclI TGATCA 1 cut(s) 283
BcoDI GTCTC 2 cut(s) 234, 1322
BfaI CTAG 3 cut(s) 923, 1028, 1425
BfmI CTRYAG 3 cut(s) 224, 1178, 1517
BglII AGATCT 1 cut(s) 645
BisI GCNGC 2 cut(s) 1482, 1485
BlnI CCTAGG 1 cut(s) 1424
BlsI GCNGC 2 cut(s) 1483, 1486
BmcAI AGTACT 1 cut(s) 52
Bme1390I CCNGG 2 cut(s) 458, 755
BmgT120I GGNCC 1 cut(s) 637
BmiI GGNNCC 1 cut(s) 881
BmrFI CCNGG 2 cut(s) 458, 755
BmsI GCATC 3 cut(s) 203, 367, 1361
BpiI GAAGAC 4 cut(s) 26, 114, 156, 1057
BplI GAGNNNNNCTC 2 cut(s) 338, 370
BpmI CTGGAG 1 cut(s) 1312
Bpu10I CCTNAGC 1 cut(s) 873
BsaAI YACGTR 1 cut(s) 900
BsaJI CCNNGG 2 cut(s) 1144, 1424
Bsc4I CCNNNNNNNGG 5 cut(s) 516, 1048, 1088, 1147, 1183
Bse118I RCCGGY 1 cut(s) 509
Bse1I ACTGG 1 cut(s) 1258
Bse3DI GCAATG 1 cut(s) 1229
BseBI CCWGG 2 cut(s) 458, 755
BseDI CCNNGG 2 cut(s) 1144, 1424
BseGI GGATG 1 cut(s) 989
BseLI CCNNNNNNNGG 5 cut(s) 516, 1048, 1088, 1147, 1183
BseMI GCAATG 1 cut(s) 1229
BseMII CTCAG 3 cut(s) 887, 924, 1327
BseNI ACTGG 1 cut(s) 1258
BseRI GAGGAG 1 cut(s) 950
BseSI GKGCMC 1 cut(s) 884
BseXI GCAGC 1 cut(s) 1471
BseYI CCCAGC 1 cut(s) 130
BsgI GTGCAG 1 cut(s) 534
BshFI GGCC 3 cut(s) 638, 1041, 1163
BshNI GGYRCC 1 cut(s) 879
BsiSI CCGG 1 cut(s) 510
BslFI GGGAC 2 cut(s) 780, 1466
BslI CCNNNNNNNGG 5 cut(s) 516, 1048, 1088, 1147, 1183
BsmAI GTCTC 2 cut(s) 234, 1322
BsmFI GGGAC 2 cut(s) 780, 1466
BsmI GAATGC 1 cut(s) 258
BsnI GGCC 3 cut(s) 638, 1041, 1163
Bsp1286I GDGCHC 1 cut(s) 884
Bsp143I GATC 8 cut(s) 134, 241, 283, 460, 645, 720, 988, 1017
BspACI CCGC 2 cut(s) 128, 1482
BspANI GGCC 3 cut(s) 638, 1041, 1163
BspCNI CTCAG 3 cut(s) 886, 925, 1326
BspHI TCATGA 1 cut(s) 1506
BspLI GGNNCC 1 cut(s) 881
BspMAI CTGCAG 1 cut(s) 1182
BspPI GGATC 4 cut(s) 142, 468, 983, 1012
BspQI GCTCTTC 2 cut(s) 1027, 1146
BspT107I GGYRCC 1 cut(s) 879
BsrDI GCAATG 1 cut(s) 1229
BsrFI RCCGGY 1 cut(s) 509
BsrI ACTGG 1 cut(s) 1258
BssAI RCCGGY 1 cut(s) 509
BssECI CCNNGG 2 cut(s) 1144, 1424
BssMI GATC 8 cut(s) 134, 241, 283, 460, 645, 720, 988, 1017
BssNAI GTATAC 1 cut(s) 903
BssT1I CCWWGG 1 cut(s) 1424
Bst1107I GTATAC 1 cut(s) 903
Bst2UI CCWGG 2 cut(s) 458, 755
Bst4CI ACNGT 5 cut(s) 50, 144, 228, 484, 710
Bst6I CTCTTC 3 cut(s) 1027, 1146, 1397
BstBAI YACGTR 1 cut(s) 900
BstC8I GCNNGC 1 cut(s) 1039
BstDEI CTNAG 4 cut(s) 652, 873, 933, 1313
BstDSI CCRYGG 1 cut(s) 1144
BstF5I GGATG 1 cut(s) 989
BstHHI GCGC 1 cut(s) 456
BstKTI GATC 8 cut(s) 137, 244, 286, 463, 648, 723, 991, 1020
BstMAI GTCTC 2 cut(s) 234, 1322
BstMBI GATC 8 cut(s) 134, 241, 283, 460, 645, 720, 988, 1017
BstNI CCWGG 2 cut(s) 458, 755
BstNSI RCATGY 2 cut(s) 252, 1440
BstSCI CCNGG 2 cut(s) 456, 753
BstSFI CTRYAG 3 cut(s) 224, 1178, 1517
BstSLI GKGCMC 1 cut(s) 884
BstV1I GCAGC 1 cut(s) 1471
BstV2I GAAGAC 4 cut(s) 26, 114, 156, 1057
BstX2I RGATCY 1 cut(s) 645
BstYI RGATCY 1 cut(s) 645
BstZ17I GTATAC 1 cut(s) 903
BsuRI GGCC 3 cut(s) 638, 1041, 1163
BtgI CCRYGG 1 cut(s) 1144
BtsCI GGATG 1 cut(s) 989
BtsI GCAGTG 1 cut(s) 214
BtsIMutI CAGTG 2 cut(s) 214, 1013
Cac8I GCNNGC 1 cut(s) 1039
CciI TCATGA 1 cut(s) 1506
CfoI GCGC 1 cut(s) 456
Cfr10I RCCGGY 1 cut(s) 509
Cfr13I GGNCC 1 cut(s) 637
Csp6I GTAC 3 cut(s) 51, 1222, 1429
CviAII CATG 9 cut(s) 11, 249, 770, 913, 1132, 1294, 1349, 1437, 1507
CviQI GTAC 3 cut(s) 51, 1222, 1429
DdeI CTNAG 4 cut(s) 652, 873, 933, 1313
DpnI GATC 8 cut(s) 136, 243, 285, 462, 647, 722, 990, 1019
DpnII GATC 8 cut(s) 134, 241, 283, 460, 645, 720, 988, 1017
DraI TTTAAA 1 cut(s) 28
EaeI YGGCCR 1 cut(s) 1039
Eam1104I CTCTTC 3 cut(s) 1027, 1146, 1397
EarI CTCTTC 3 cut(s) 1027, 1146, 1397
Eco130I CCWWGG 1 cut(s) 1424
Eco147I AGGCCT 1 cut(s) 1163
Eco57I CTGAAG 1 cut(s) 1487
EcoRII CCWGG 2 cut(s) 456, 753
EcoT14I CCWWGG 1 cut(s) 1424
EcoT22I ATGCAT 1 cut(s) 382
ErhI CCWWGG 1 cut(s) 1424
FaeI CATG 9 cut(s) 14, 252, 773, 916, 1135, 1297, 1352, 1440, 1510
FaqI GGGAC 2 cut(s) 780, 1466
FatI CATG 9 cut(s) 10, 248, 769, 912, 1131, 1293, 1348, 1436, 1506
FauNDI CATATG 1 cut(s) 382
FbaI TGATCA 1 cut(s) 283
FblI GTMKAC 1 cut(s) 902
Fnu4HI GCNGC 2 cut(s) 1482, 1485
FokI GGATG 1 cut(s) 996
Fsp4HI GCNGC 2 cut(s) 1482, 1485
FspBI CTAG 3 cut(s) 923, 1028, 1425
GlaI GCGC 1 cut(s) 455
GluI GCNGC 2 cut(s) 1482, 1485
GsaI CCCAGC 1 cut(s) 134
GsuI CTGGAG 1 cut(s) 1312
HaeIII GGCC 3 cut(s) 638, 1041, 1163
HapII CCGG 1 cut(s) 510
HhaI GCGC 1 cut(s) 456
Hin1II CATG 9 cut(s) 14, 252, 773, 916, 1135, 1297, 1352, 1440, 1510
Hin6I GCGC 1 cut(s) 454
HinP1I GCGC 1 cut(s) 454
HincII GTYRAC 3 cut(s) 397, 733, 1300
HindII GTYRAC 3 cut(s) 397, 733, 1300
HindIII AAGCTT 1 cut(s) 948
HinfI GANTC 7 cut(s) 152, 472, 530, 584, 1044, 1276, 1345
HpaII CCGG 1 cut(s) 510
HphI GGTGA 1 cut(s) 481
Hpy166II GTNNAC 5 cut(s) 397, 733, 903, 1205, 1300
Hpy188I TCNGA 7 cut(s) 18, 44, 169, 358, 645, 934, 1218
Hpy188III TCNNGA 5 cut(s) 86, 992, 1319, 1412, 1507
Hpy8I GTNNAC 5 cut(s) 397, 733, 903, 1205, 1300
Hpy99I CGWCG 1 cut(s) 1076
HpyAV CCTTC 4 cut(s) 495, 628, 757, 1397
HpyCH4III ACNGT 5 cut(s) 50, 144, 228, 484, 710
HpyCH4IV ACGT 3 cut(s) 899, 1071, 1220
HpyF3I CTNAG 4 cut(s) 652, 873, 933, 1313
HpySE526I ACGT 3 cut(s) 899, 1071, 1220
Hsp92II CATG 9 cut(s) 14, 252, 773, 916, 1135, 1297, 1352, 1440, 1510
HspAI GCGC 1 cut(s) 454
Ksp22I TGATCA 1 cut(s) 283
Kzo9I GATC 8 cut(s) 134, 241, 283, 460, 645, 720, 988, 1017
LguI GCTCTTC 2 cut(s) 1027, 1146
LmnI GCTCC 2 cut(s) 71, 359
Lsp1109I GCAGC 1 cut(s) 1471
LweI GCATC 3 cut(s) 203, 367, 1361
MaeI CTAG 3 cut(s) 923, 1028, 1425
MaeII ACGT 3 cut(s) 899, 1071, 1220
MaeIII GTNAC 5 cut(s) 138, 348, 469, 794, 895
MalI GATC 8 cut(s) 136, 243, 285, 462, 647, 722, 990, 1019
MboI GATC 8 cut(s) 134, 241, 283, 460, 645, 720, 988, 1017
MflI RGATCY 1 cut(s) 645
MhlI GDGCHC 1 cut(s) 884
MluCI AATT 6 cut(s) 91, 114, 832, 851, 1009, 1280
MlyI GAGTC 5 cut(s) 146, 466, 524, 1053, 1270
MmeI TCCRAC 3 cut(s) 67, 181, 381
Mph1103I ATGCAT 1 cut(s) 382
MseI TTAA 6 cut(s) 27, 303, 477, 693, 1167, 1236
MspA1I CMGCKG 2 cut(s) 130, 1484
MspI CCGG 1 cut(s) 510
MspR9I CCNGG 2 cut(s) 458, 755
Mva1269I GAATGC 1 cut(s) 258
MvaI CCWGG 2 cut(s) 458, 755
NdeI CATATG 1 cut(s) 382
NdeII GATC 8 cut(s) 134, 241, 283, 460, 645, 720, 988, 1017
NlaIII CATG 9 cut(s) 14, 252, 773, 916, 1135, 1297, 1352, 1440, 1510
NlaIV GGNNCC 1 cut(s) 881
NmeAIII GCCGAG 1 cut(s) 1067
NmuCI GTSAC 3 cut(s) 138, 469, 895
NsiI ATGCAT 1 cut(s) 382
NspI RCATGY 2 cut(s) 252, 1440
PagI TCATGA 1 cut(s) 1506
PceI AGGCCT 1 cut(s) 1163
PciI ACATGT 1 cut(s) 1436
PciSI GCTCTTC 2 cut(s) 1027, 1146
PctI GAATGC 1 cut(s) 258
PfeI GAWTC 2 cut(s) 584, 1345
PflFI GACNNNGTC 1 cut(s) 1295
PfoI TCCNGGA 1 cut(s) 753
PkrI GCNGC 2 cut(s) 1483, 1486
PleI GAGTC 5 cut(s) 146, 466, 524, 1052, 1270
PpsI GAGTC 5 cut(s) 146, 466, 524, 1052, 1270
Ppu21I YACGTR 1 cut(s) 900
PscI ACATGT 1 cut(s) 1436
Psp6I CCWGG 2 cut(s) 456, 753
PspFI CCCAGC 1 cut(s) 130
PspGI CCWGG 2 cut(s) 456, 753
PspN4I GGNNCC 1 cut(s) 881
PspPI GGNCC 1 cut(s) 637
PstI CTGCAG 1 cut(s) 1182
PsuI RGATCY 1 cut(s) 645
PsyI GACNNNGTC 1 cut(s) 1295
RsaI GTAC 3 cut(s) 52, 1223, 1430
RsaNI GTAC 3 cut(s) 51, 1222, 1429
SapI GCTCTTC 2 cut(s) 1027, 1146
SaqAI TTAA 6 cut(s) 27, 303, 477, 693, 1167, 1236
SatI GCNGC 2 cut(s) 1482, 1485
Sau3AI GATC 8 cut(s) 134, 241, 283, 460, 645, 720, 988, 1017
Sau96I GGNCC 1 cut(s) 637
ScaI AGTACT 1 cut(s) 52
SchI GAGTC 5 cut(s) 146, 466, 524, 1053, 1270
ScrFI CCNGG 2 cut(s) 458, 755
SduI GDGCHC 1 cut(s) 884
SfaNI GCATC 3 cut(s) 203, 367, 1361
SfcI CTRYAG 3 cut(s) 224, 1178, 1517
Sse9I AATT 6 cut(s) 91, 114, 832, 851, 1009, 1280
SseBI AGGCCT 1 cut(s) 1163
SsiI CCGC 2 cut(s) 128, 1482
SspMI CTAG 3 cut(s) 923, 1028, 1425
StuI AGGCCT 1 cut(s) 1163
StyD4I CCNGG 2 cut(s) 456, 753
StyI CCWWGG 1 cut(s) 1424
TaaI ACNGT 5 cut(s) 50, 144, 228, 484, 710
TaiI ACGT 3 cut(s) 902, 1074, 1223
TaqI TCGA 3 cut(s) 1074, 1109, 1320
TasI AATT 6 cut(s) 91, 114, 832, 851, 1009, 1280
TatI WGTACW 1 cut(s) 50
TauI GCSGC 1 cut(s) 1484
TfiI GAWTC 2 cut(s) 584, 1345
Tru1I TTAA 6 cut(s) 27, 303, 477, 693, 1167, 1236
Tru9I TTAA 6 cut(s) 27, 303, 477, 693, 1167, 1236
TscAI CASTG 2 cut(s) 214, 1020
TseFI GTSAC 3 cut(s) 138, 469, 895
TseI GCWGC 1 cut(s) 1484
Tsp45I GTSAC 3 cut(s) 138, 469, 895
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 2 cut(s) 214, 1020
Tth111I GACNNNGTC 1 cut(s) 1295
XceI RCATGY 2 cut(s) 252, 1440
XcmI CCANNNNNNNNNTGG 1 cut(s) 833
XmaJI CCTAGG 1 cut(s) 1424
XmiI GTMKAC 1 cut(s) 902
XspI CTAG 3 cut(s) 923, 1028, 1425
ZrmI AGTACT 1 cut(s) 52
Zsp2I ATGCAT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.