Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005316

Physical Location & Seq

Genomic Coordinates Forward (+)

22269047 .. 22269790

Gene Structure 744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCATCGTTGTCGACGAATTCGCCATGCGCGGCGTGTAAGTTCCTGCGACGCAAGTGCCAGGCAGAGTGCGTATTTGCGCCATACTTCCCACCGGACCAGCCGCATAAGTTTGCTAATGTTCACAAAGTTTTTGGGGCCAGCAACGTCACTAAACTGCTCAATGAGTTGCACCCACACCAGCGTGAGGACGCCGTCAACTCGCTCGCCTACGAGGCCGATATGCGCCTCCGCGATCCCGTCTACGGCTGCGTTGGAGTCATCTCTCTCCTCCAAAACCAACTCCGCCAACTTCAGATGGATCTGACCTTTGCTAAATCCGAACTCTCCAAATATCAAAATCTGCAGGGTCTCACTGCCAGTCACGGACTCATAGCCGCCGCCGCTGCTGCCGCCGCAACTACCACTGCTGCTACCCACACCCACAGTAACAATAACAATAATAATAACAATCACGACCATCATCTACATTTACAGTCCTCTTCACTCAACAACTTGGGGATGGGGATCAATCTCAATTCAGGCGGAGGAGGCCGAGACCAGTTTTTTCCCAGAGATCGAGATCATCATTCCTATCATCAGCAACAGATGATGATTAGGAGCTTTGATGGCGGAAACAACTACGATGCAAGCCTTCTTGCCATGAACGCTGCTGCAGGGGGCATTTATGGCCAACTCAGTCAACAGTTCCAGCAAACTAGGGCTGCTGCTGGTGACGACCGCCGAACCATTGATCCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009799 GO:0009908 GO:0009943 GO:0009944 GO:0009954 GO:0009955 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0065001 GO:0070013 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

248

Amino Acids

27.05

Weight (kDa)

7.78

Isoelectric Point (pI)

42.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	9 - 106	7.6e-43	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65620 AT1G65620 AT1G65620 AT1G65620 AT1G65620
fragaria_vesca	FvH4_6g00042 FvH4_6g00042 FvH4_6g00042 FvH4_6g00042
malus_domestica	MD00G1016900.v1.1 MD12G1261100.v1.1
prunus_persica	Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1 Prupe.6G365600_v2.0.a1
pyrus_communis	pycom12g24260 pycom17g24020
rosa_chinensis	RchiOBHm_Chr3g0447371
rosa_laevigata	RLG00000026004
rosa_multiflora	Rmu_ssc0000473.1_g000010
rosa_roxburghii	Rroxscaffold_6G00425570
rosa_rugosa	Rorug02G0600700 Rorug02G0600800
rosa_samantha	Rh3AG001000 Rh3BG000700 Rh3CG000700 Rh3DG000900
rosa_wichuraiana	Rw3G000050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	14, 243
AccII	CGCG	2 cut(s)	32, 234
AclWI	GGATC	4 cut(s)	230, 309, 515, 728
AcoI	YGGCCR	1 cut(s)	670
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	192
AfiI	CCNNNNNNNGG	2 cut(s)	187, 245
AjnI	CCWGG	1 cut(s)	60
AleI	CACNNNNGTG	1 cut(s)	183
AloI	GAACNNNNNNTCC	1 cut(s)	718
AluBI	AGCT	1 cut(s)	603
AluI	AGCT	1 cut(s)	603
Alw26I	GTCTC	2 cut(s)	356, 531
AlwI	GGATC	4 cut(s)	230, 309, 515, 728
AoxI	GGCC	4 cut(s)	138, 216, 532, 670
ApeKI	GCWGC	8 cut(s)	249, 386, 389, 410, 650, 653, 704, 707
ApoI	RAATTY	1 cut(s)	19
AspLEI	GCGC	3 cut(s)	32, 82, 228
AspS9I	GGNCC	2 cut(s)	97, 138
AsuHPI	GGTGA	1 cut(s)	725
AvaII	GGWCC	1 cut(s)	97
BalI	TGGCCA	1 cut(s)	672
BbvI	GCAGC	8 cut(s)	236, 373, 376, 397, 637, 640, 691, 694
BccI	CCATC	4 cut(s)	292, 468, 496, 602
BceAI	ACGGC	2 cut(s)	179, 262
BcgI	CGANNNNNNTGC	3 cut(s)	28, 39, 73
BciT130I	CCWGG	1 cut(s)	62
BcoDI	GTCTC	2 cut(s)	356, 531
BfaI	CTAG	1 cut(s)	699
BfmI	CTRYAG	2 cut(s)	344, 654
BglI	GCCNNNNNGGC	1 cut(s)	215
Bme1390I	CCNGG	1 cut(s)	62
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	2 cut(s)	97, 138
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	62
BmsI	GCATC	2 cut(s)	14, 616
BsaBI	GATNNNNATC	2 cut(s)	506, 561
BsaHI	GRCGYC	1 cut(s)	192
BsaI	GGTCTC	2 cut(s)	356, 531
BsaWI	WCCGGW	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 245
Bse1I	ACTGG	2 cut(s)	360, 541
Bse8I	GATNNNNATC	2 cut(s)	506, 561
BseBI	CCWGG	1 cut(s)	62
BseGI	GGATG	1 cut(s)	507
BseJI	GATNNNNATC	2 cut(s)	506, 561
BseLI	CCNNNNNNNGG	2 cut(s)	187, 245
BseMII	CTCAG	1 cut(s)	691
BseNI	ACTGG	2 cut(s)	360, 541
BseRI	GAGGAG	2 cut(s)	260, 543
BseXI	GCAGC	8 cut(s)	236, 373, 376, 397, 637, 640, 691, 694
Bsh1236I	CGCG	2 cut(s)	32, 234
Bsh1285I	CGRYCG	1 cut(s)	721
BshFI	GGCC	4 cut(s)	140, 218, 534, 672
BsiEI	CGRYCG	1 cut(s)	721
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	2 cut(s)	187, 245
BsmAI	GTCTC	2 cut(s)	356, 531
BsnI	GGCC	4 cut(s)	140, 218, 534, 672
Bso31I	GGTCTC	2 cut(s)	356, 531
Bsp143I	GATC	6 cut(s)	235, 301, 507, 556, 562, 733
BspANI	GGCC	4 cut(s)	140, 218, 534, 672
BspCNI	CTCAG	1 cut(s)	690
BspFNI	CGCG	2 cut(s)	32, 234
BspLI	GGNNCC	1 cut(s)	139
BspMAI	CTGCAG	2 cut(s)	348, 658
BspPI	GGATC	4 cut(s)	230, 309, 515, 728
BspTNI	GGTCTC	2 cut(s)	356, 531
BsrI	ACTGG	2 cut(s)	360, 541
BssMI	GATC	6 cut(s)	235, 301, 507, 556, 562, 733
BssNI	GRCGYC	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	3 cut(s)	428, 477, 687
Bst6I	CTCTTC	1 cut(s)	487
BstACI	GRCGYC	1 cut(s)	192
BstC8I	GCNNGC	3 cut(s)	142, 207, 631
BstDEI	CTNAG	1 cut(s)	677
BstF5I	GGATG	1 cut(s)	507
BstFNI	CGCG	2 cut(s)	32, 234
BstHHI	GCGC	3 cut(s)	32, 82, 228
BstKTI	GATC	6 cut(s)	238, 304, 510, 559, 565, 736
BstMAI	GTCTC	2 cut(s)	356, 531
BstMBI	GATC	6 cut(s)	235, 301, 507, 556, 562, 733
BstMCI	CGRYCG	1 cut(s)	721
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	60
BstSFI	CTRYAG	2 cut(s)	344, 654
BstUI	CGCG	2 cut(s)	32, 234
BstV1I	GCAGC	8 cut(s)	236, 373, 376, 397, 637, 640, 691, 694
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BsuRI	GGCC	4 cut(s)	140, 218, 534, 672
BtsCI	GGATG	1 cut(s)	507
BtsI	GCAGTG	2 cut(s)	354, 405
BtsIMutI	CAGTG	2 cut(s)	354, 405
Cac8I	GCNNGC	3 cut(s)	142, 207, 631
CfoI	GCGC	3 cut(s)	32, 82, 228
Cfr13I	GGNCC	2 cut(s)	97, 138
CseI	GACGC	2 cut(s)	60, 200
CviAII	CATG	2 cut(s)	27, 643
DdeI	CTNAG	1 cut(s)	677
DpnI	GATC	6 cut(s)	237, 303, 509, 558, 564, 735
DpnII	GATC	6 cut(s)	235, 301, 507, 556, 562, 733
EaeI	YGGCCR	1 cut(s)	670
Eam1104I	CTCTTC	1 cut(s)	487
EarI	CTCTTC	1 cut(s)	487
EciI	GGCGGA	3 cut(s)	275, 540, 627
Eco31I	GGTCTC	2 cut(s)	356, 531
Eco47I	GGWCC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	60
FaeI	CATG	2 cut(s)	30, 646
FaiI	YATR	7 cut(s)	28, 85, 108, 224, 374, 644, 669
FatI	CATG	2 cut(s)	26, 642
FblI	GTMKAC	2 cut(s)	14, 243
FokI	GGATG	1 cut(s)	514
FspBI	CTAG	1 cut(s)	699
GlaI	GCGC	3 cut(s)	31, 81, 227
HaeIII	GGCC	4 cut(s)	140, 218, 534, 672
HapII	CCGG	1 cut(s)	95
HgaI	GACGC	2 cut(s)	60, 200
HhaI	GCGC	3 cut(s)	32, 82, 228
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	2 cut(s)	30, 646
Hin6I	GCGC	3 cut(s)	30, 80, 226
HinP1I	GCGC	3 cut(s)	30, 80, 226
HincII	GTYRAC	3 cut(s)	15, 199, 683
HindII	GTYRAC	3 cut(s)	15, 199, 683
HinfI	GANTC	2 cut(s)	258, 369
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	1 cut(s)	725
Hpy166II	GTNNAC	5 cut(s)	15, 124, 199, 244, 683
Hpy188I	TCNGA	3 cut(s)	297, 306, 322
Hpy188III	TCNNGA	2 cut(s)	455, 560
Hpy8I	GTNNAC	5 cut(s)	15, 124, 199, 244, 683
Hpy99I	CGWCG	2 cut(s)	19, 54
HpyAV	CCTTC	1 cut(s)	644
HpyCH4III	ACNGT	3 cut(s)	428, 477, 687
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	4 cut(s)	172, 346, 629, 656
HpyF3I	CTNAG	1 cut(s)	677
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	30, 646
HspAI	GCGC	3 cut(s)	30, 80, 226
Kzo9I	GATC	6 cut(s)	235, 301, 507, 556, 562, 733
LmnI	GCTCC	1 cut(s)	600
Lsp1109I	GCAGC	8 cut(s)	236, 373, 376, 397, 637, 640, 691, 694
LweI	GCATC	2 cut(s)	14, 616
MaeI	CTAG	1 cut(s)	699
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	4 cut(s)	148, 362, 428, 713
MalI	GATC	6 cut(s)	237, 303, 509, 558, 564, 735
MboI	GATC	6 cut(s)	235, 301, 507, 556, 562, 733
MboII	GAAGA	1 cut(s)	474
MflI	RGATCY	1 cut(s)	301
MlsI	TGGCCA	1 cut(s)	672
MluCI	AATT	2 cut(s)	19, 517
MluNI	TGGCCA	1 cut(s)	672
MlyI	GAGTC	2 cut(s)	267, 363
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	7 cut(s)	181, 208, 239, 281, 490, 521, 524
Mox20I	TGGCCA	1 cut(s)	672
MscI	TGGCCA	1 cut(s)	672
MseI	TTAA	1 cut(s)	742
MslI	CAYNNNNRTG	1 cut(s)	183
Msp20I	TGGCCA	1 cut(s)	672
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	62
MvnI	CGCG	2 cut(s)	32, 234
NdeII	GATC	6 cut(s)	235, 301, 507, 556, 562, 733
NlaIII	CATG	2 cut(s)	30, 646
NlaIV	GGNNCC	1 cut(s)	139
NmeAIII	GCCGAG	1 cut(s)	560
NmuCI	GTSAC	3 cut(s)	148, 362, 713
OliI	CACNNNNGTG	1 cut(s)	183
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PflFI	GACNNNGTC	1 cut(s)	194
PleI	GAGTC	2 cut(s)	266, 363
PpsI	GAGTC	2 cut(s)	266, 363
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	2 cut(s)	97, 138
PstI	CTGCAG	2 cut(s)	348, 658
PsuI	RGATCY	1 cut(s)	301
PsyI	GACNNNGTC	1 cut(s)	194
RseI	CAYNNNNRTG	1 cut(s)	183
SalI	GTCGAC	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	742
Sau3AI	GATC	6 cut(s)	235, 301, 507, 556, 562, 733
Sau96I	GGNCC	2 cut(s)	97, 138
SchI	GAGTC	2 cut(s)	267, 363
ScrFI	CCNGG	1 cut(s)	62
SetI	ASST	3 cut(s)	150, 311, 605
SfaNI	GCATC	2 cut(s)	14, 616
SfcI	CTRYAG	2 cut(s)	344, 654
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	183
Sse9I	AATT	2 cut(s)	19, 517
SspMI	CTAG	1 cut(s)	699
StyD4I	CCNGG	1 cut(s)	60
TaaI	ACNGT	3 cut(s)	428, 477, 687
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	2 cut(s)	14, 559
TasI	AATT	2 cut(s)	19, 517
TauI	GCSGC	7 cut(s)	35, 106, 380, 383, 386, 395, 398
Tru1I	TTAA	1 cut(s)	742
Tru9I	TTAA	1 cut(s)	742
TscAI	CASTG	2 cut(s)	361, 412
TseFI	GTSAC	3 cut(s)	148, 362, 713
TseI	GCWGC	8 cut(s)	249, 386, 389, 410, 650, 653, 704, 707
Tsp45I	GTSAC	3 cut(s)	148, 362, 713
TspDTI	ATGAA	1 cut(s)	659
TspGWI	ACGGA	1 cut(s)	381
TspRI	CASTG	2 cut(s)	361, 412
Tth111I	GACNNNGTC	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	1 cut(s)	19
XmiI	GTMKAC	2 cut(s)	14, 243
XspI	CTAG	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.