Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005248

Physical Location & Seq

Genomic Coordinates Reverse (-)

22339613 .. 22341264

Gene Structure 1652 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGTGGAGTCTGCTTTTGGTTCAGCTCTTAAAGCCTCGCTTATGCTTATGGAGTAGTAACCTTGGGGGAAAATTGTTAATTTTTCAAAATACACTGCCATCTCATGGTGTTGGTCGCTTAAAGTTGCGTGGAGATGATCTTCGTGTCTATGGCTCTGATAAAGAGCATCCAGTAAGACTACCAGAGATCGATCCTTTCTACAAGCAGATGGCTGCGGAGTTTACCAAGTTCCAAATAGGGGTGGATGTGTATGCCTTCAGTAACAAGTACACGGATATAGCTTCATTAGTGTCTGATGCCGAGGAGAAGATTTTCCCAGAGAAAGCACAGGATAAGGCTGAAATATCTCGATTGCAATTAGAACGGACACGTTTAGAGGAGCAAATTAAAGACTGGGAATCTCGTGCTCGGTTGTTGGAAGACGAAATTAGACAGATGAAGTCTGGAAAAGCAGAAATGGAGGAGAGACTGAATGGCGAGATCGCACAGTTGAAGGCAGACATCCTTGAGAGAAGCAACCAAATGGAGAATTTAAACAAGGCCCTTGATGCAATGAAAACAGAAAGATATGAGCTCAGCACGAAAGCCACAACACTACAGGCAGAGGTGAGTTCAAGAGACGATCAGATCAATGAGATAAACAAGACCTTGCAGCATATGCAGACGGAACATCAAGAACTGCTCAACGGGGCTGAAGGGGAGCGTAAACAGGTGGAGGAGCTGACAGAAAGAGCAAAGGAACTCGAAGAGGAGATTCAGAGGCAAAGAGTTGTGATCATGGAAGGAGCAGAAGAAAAAAGAGAAGCTATAAGGCAGCTATGCTTCTCGCTCGAACATTACAGGAACGGATACCATAGGCTTAGACAGGCGTGCATGGGAAACAAGAGAGTTCCAGTTTTGGCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

KIP1

Protein Analysis

303

Amino Acids

35.12

Weight (kDa)

5.73

Isoelectric Point (pI)

49.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec23_trunk	PF04811	18 - 96	2e-17	Sec23/Sec24 trunk domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30500 AT2G30500 AT2G30500 AT5G58320 AT5G58320 AT5G58320 AT5G58320 AT5G58320
fragaria_vesca	FvH4_3g40650 FvH4_3g40650
malus_domestica	MD03G1050500.v1.1 MD11G1052600.v1.1
prunus_persica	Prupe.6G040100_v2.0.a1 Prupe.6G040100_v2.0.a1
pyrus_communis	pycom03g03990 pycom11g04290 pycom17g24080
rosa_chinensis	RchiOBHm_Chr5g0073401
rosa_laevigata	RLG00000036383
rosa_multiflora	Rmu_co8503505.1_g000001 Rmu_sc0001997.1_g000010
rosa_roxburghii	Rroxscaffold_1G00007840
rosa_rugosa	Rorug05G0423400 Rorug05G0423400
rosa_samantha	Rh5AG479900 Rh5BG501000 Rh5CG524100 Rh5DG513000
rosa_wichuraiana	Rw5G044620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	104
AciI	CCGC	1 cut(s)	215
AclWI	GGATC	1 cut(s)	185
AcsI	RAATTY	1 cut(s)	529
AcuI	CTGAAG	2 cut(s)	241, 714
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	2 cut(s)	104, 238
AflIII	ACRYGT	1 cut(s)	368
AgsI	TTSAA	3 cut(s)	86, 493, 615
AluBI	AGCT	6 cut(s)	25, 281, 574, 721, 806, 817
AluI	AGCT	6 cut(s)	25, 281, 574, 721, 806, 817
Alw21I	GWGCWC	2 cut(s)	409, 576
Alw26I	GTCTC	2 cut(s)	460, 612
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	1 cut(s)	540
ApeKI	GCWGC	3 cut(s)	212, 652, 814
ApoI	RAATTY	1 cut(s)	529
Asp700I	GAANNNNTTC	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	541
AsuHPI	GGTGA	1 cut(s)	619
BanII	GRGCYC	1 cut(s)	576
BauI	CACGAG	1 cut(s)	402
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	2 cut(s)	409, 576
BbvI	GCAGC	3 cut(s)	199, 664, 826
BccI	CCATC	2 cut(s)	106, 202
BciVI	GTATCC	1 cut(s)	842
BclI	TGATCA	1 cut(s)	774
BcoDI	GTCTC	2 cut(s)	460, 612
BfmI	CTRYAG	1 cut(s)	596
BfuI	GTATCC	1 cut(s)	842
BisI	GCNGC	3 cut(s)	213, 653, 815
BlpI	GCTNAGC	1 cut(s)	575
BlsI	GCNGC	3 cut(s)	214, 654, 816
BmgT120I	GGNCC	1 cut(s)	541
BmrI	ACTGGG	1 cut(s)	403
BmsI	GCATC	3 cut(s)	175, 286, 538
BmuI	ACTGGG	1 cut(s)	403
BpiI	GAAGAC	1 cut(s)	426
Bpu1102I	GCTNAGC	1 cut(s)	575
BpuEI	CTTGAG	1 cut(s)	527
Bsa29I	ATCGAT	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	61, 300
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 238
Bse1I	ACTGG	3 cut(s)	170, 398, 893
Bse3DI	GCAATG	1 cut(s)	558
BseCI	ATCGAT	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	61, 300
BseGI	GGATG	3 cut(s)	166, 250, 501
BseLI	CCNNNNNNNGG	2 cut(s)	104, 238
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	1 cut(s)	589
BseNI	ACTGG	3 cut(s)	170, 398, 893
BseRI	GAGGAG	5 cut(s)	317, 392, 476, 731, 764
BseXI	GCAGC	3 cut(s)	199, 664, 826
BshFI	GGCC	1 cut(s)	542
BshVI	ATCGAT	1 cut(s)	189
BsiHKAI	GWGCWC	2 cut(s)	409, 576
BslI	CCNNNNNNNGG	2 cut(s)	104, 238
BsmAI	GTCTC	2 cut(s)	460, 612
BsmBI	CGTCTC	1 cut(s)	612
BsnI	GGCC	1 cut(s)	542
Bsp1286I	GDGCHC	2 cut(s)	409, 576
Bsp143I	GATC	7 cut(s)	136, 186, 190, 480, 622, 627, 774
Bsp1720I	GCTNAGC	1 cut(s)	575
BspACI	CCGC	1 cut(s)	215
BspANI	GGCC	1 cut(s)	542
BspCNI	CTCAG	1 cut(s)	588
BspDI	ATCGAT	1 cut(s)	189
BspPI	GGATC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	558
BsrI	ACTGG	3 cut(s)	170, 398, 893
BssECI	CCNNGG	2 cut(s)	61, 300
BssMI	GATC	7 cut(s)	136, 186, 190, 480, 622, 627, 774
BssSI	CACGAG	1 cut(s)	402
BssT1I	CCWWGG	1 cut(s)	61
Bst2BI	CACGAG	1 cut(s)	402
Bst4CI	ACNGT	1 cut(s)	489
Bst6I	CTCTTC	1 cut(s)	741
BstAPI	GCANNNNNTGC	1 cut(s)	658
BstC8I	GCNNGC	1 cut(s)	871
BstDEI	CTNAG	2 cut(s)	575, 860
BstF5I	GGATG	3 cut(s)	166, 250, 501
BstKTI	GATC	7 cut(s)	139, 189, 193, 483, 625, 630, 777
BstMAI	GTCTC	2 cut(s)	460, 612
BstMBI	GATC	7 cut(s)	136, 186, 190, 480, 622, 627, 774
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 548, 658
BstSFI	CTRYAG	1 cut(s)	596
BstV1I	GCAGC	3 cut(s)	199, 664, 826
BstV2I	GAAGAC	1 cut(s)	426
Bsu15I	ATCGAT	1 cut(s)	189
BsuI	GTATCC	1 cut(s)	842
BsuRI	GGCC	1 cut(s)	542
BsuTUI	ATCGAT	1 cut(s)	189
BtsCI	GGATG	3 cut(s)	166, 250, 501
BtsI	GCAGTG	1 cut(s)	92
BtsIMutI	CAGTG	1 cut(s)	92
Cac8I	GCNNGC	1 cut(s)	871
Cfr13I	GGNCC	1 cut(s)	541
ClaI	ATCGAT	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	3 cut(s)	104, 778, 874
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	2 cut(s)	575, 860
DpnI	GATC	7 cut(s)	138, 188, 192, 482, 624, 629, 776
DpnII	GATC	7 cut(s)	136, 186, 190, 480, 622, 627, 774
DraI	TTTAAA	1 cut(s)	534
Eam1104I	CTCTTC	1 cut(s)	741
EarI	CTCTTC	1 cut(s)	741
Ecl136II	GAGCTC	1 cut(s)	574
Eco130I	CCWWGG	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	576
Eco53kI	GAGCTC	1 cut(s)	574
Eco57I	CTGAAG	2 cut(s)	241, 714
EcoICRI	GAGCTC	1 cut(s)	574
EcoO109I	RGGNCCY	1 cut(s)	541
EcoT14I	CCWWGG	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	576
ErhI	CCWWGG	1 cut(s)	61
Esp3I	CGTCTC	1 cut(s)	612
FaeI	CATG	3 cut(s)	107, 781, 877
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FatI	CATG	3 cut(s)	103, 777, 873
FauNDI	CATATG	1 cut(s)	657
FbaI	TGATCA	1 cut(s)	774
Fnu4HI	GCNGC	3 cut(s)	213, 653, 815
FokI	GGATG	3 cut(s)	153, 257, 488
FriOI	GRGCYC	1 cut(s)	576
Fsp4HI	GCNGC	3 cut(s)	213, 653, 815
GluI	GCNGC	3 cut(s)	213, 653, 815
HaeIII	GGCC	1 cut(s)	542
Hin1II	CATG	3 cut(s)	107, 781, 877
HinfI	GANTC	3 cut(s)	7, 398, 754
HphI	GGTGA	1 cut(s)	619
Hpy166II	GTNNAC	3 cut(s)	222, 270, 707
Hpy188I	TCNGA	4 cut(s)	157, 295, 627, 759
Hpy188III	TCNNGA	4 cut(s)	348, 444, 615, 674
Hpy8I	GTNNAC	3 cut(s)	222, 270, 707
HpyAV	CCTTC	4 cut(s)	265, 487, 689, 776
HpyCH4III	ACNGT	1 cut(s)	489
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	5 cut(s)	355, 551, 652, 661, 873
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 548, 658
HpyF3I	CTNAG	2 cut(s)	575, 860
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	3 cut(s)	107, 781, 877
Ksp22I	TGATCA	1 cut(s)	774
Kzo9I	GATC	7 cut(s)	136, 186, 190, 480, 622, 627, 774
LmnI	GCTCC	4 cut(s)	379, 700, 718, 785
Lsp1109I	GCAGC	3 cut(s)	199, 664, 826
LweI	GCATC	3 cut(s)	175, 286, 538
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	2 cut(s)	56, 260
MalI	GATC	7 cut(s)	138, 188, 192, 482, 624, 629, 776
MboI	GATC	7 cut(s)	136, 186, 190, 480, 622, 627, 774
MboII	GAAGA	5 cut(s)	131, 319, 431, 758, 803
MhlI	GDGCHC	2 cut(s)	409, 576
MluCI	AATT	6 cut(s)	71, 78, 356, 384, 426, 529
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	8 cut(s)	45, 295, 370, 454, 598, 709, 742, 753
MroXI	GAANNNNTTC	1 cut(s)	311
MseI	TTAA	6 cut(s)	29, 77, 119, 387, 533, 907
MwoI	GCNNNNNNNGC	3 cut(s)	31, 548, 658
NdeI	CATATG	1 cut(s)	657
NdeII	GATC	7 cut(s)	136, 186, 190, 480, 622, 627, 774
NlaIII	CATG	3 cut(s)	107, 781, 877
NmeAIII	GCCGAG	1 cut(s)	325
PdmI	GAANNNNTTC	1 cut(s)	311
PfeI	GAWTC	2 cut(s)	398, 754
PflMI	CCANNNNNTGG	1 cut(s)	104
PkrI	GCNGC	3 cut(s)	214, 654, 816
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
Psp124BI	GAGCTC	1 cut(s)	576
PspPI	GGNCC	1 cut(s)	541
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SacI	GAGCTC	1 cut(s)	576
SaqAI	TTAA	6 cut(s)	29, 77, 119, 387, 533, 907
SatI	GCNGC	3 cut(s)	213, 653, 815
Sau3AI	GATC	7 cut(s)	136, 186, 190, 480, 622, 627, 774
Sau96I	GGNCC	1 cut(s)	541
SchI	GAGTC	1 cut(s)	16
SduI	GDGCHC	2 cut(s)	409, 576
SfaNI	GCATC	3 cut(s)	175, 286, 538
SfcI	CTRYAG	1 cut(s)	596
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	6 cut(s)	71, 78, 356, 384, 426, 529
SsiI	CCGC	1 cut(s)	215
SstI	GAGCTC	1 cut(s)	576
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	1 cut(s)	489
TaiI	ACGT	1 cut(s)	373
TaqI	TCGA	4 cut(s)	189, 349, 744, 831
TasI	AATT	6 cut(s)	71, 78, 356, 384, 426, 529
TatI	WGTACW	1 cut(s)	267
TfiI	GAWTC	2 cut(s)	398, 754
Tru1I	TTAA	6 cut(s)	29, 77, 119, 387, 533, 907
Tru9I	TTAA	6 cut(s)	29, 77, 119, 387, 533, 907
TscAI	CASTG	1 cut(s)	99
TseI	GCWGC	3 cut(s)	212, 652, 814
TspDTI	ATGAA	3 cut(s)	273, 452, 569
TspGWI	ACGGA	4 cut(s)	287, 379, 680, 861
TspRI	CASTG	1 cut(s)	99
Van91I	CCANNNNNTGG	1 cut(s)	104
XapI	RAATTY	1 cut(s)	529
XmnI	GAANNNNTTC	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.